RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CYB5RLQ6IPT4 315 aa12.26□□□□□ -0.45
ATG4A-201ENST00000343524 BAZ1BQ9UIG0 1483 aaKnown RBP12.23□□□□□ -0.45
ATG4A-201ENST00000343524 ATF5Q9Y2D1 282 aaPredicted RBP12.21□□□□□ -0.45
ATG4A-201ENST00000343524 SMARCA4P51532 1647 aa12.19□□□□□ -0.46
ATG4A-201ENST00000343524 RBM42Q9BTD8 480 aaKnown RBP12.19□□□□□ -0.46
ATG4A-201ENST00000343524 ANP32EQ9BTT0 268 aa12.19□□□□□ -0.46
ATG4A-201ENST00000343524 CCER1Q8TC90 406 aaPredicted RBP12.16□□□□□ -0.46
ATG4A-201ENST00000343524 CADPSQ9ULU8 1353 aa12.16□□□□□ -0.46
ATG4A-201ENST00000343524 ARAP1Q96P48 1450 aa12.15□□□□□ -0.46
ATG4A-201ENST00000343524 ZBTB22O15209 634 aa12.12□□□□□ -0.47
ATG4A-201ENST00000343524 PEG3Q9GZU2 1588 aa12.11□□□□□ -0.47
ATG4A-201ENST00000343524 CEP164Q9UPV0 1460 aa12.1□□□□□ -0.47
ATG4A-201ENST00000343524 ZNF316A6NFI3 1004 aaPredicted RBP12.07□□□□□ -0.48
ATG4A-201ENST00000343524 FAM9AQ8IZU1 332 aaPredicted RBP12.07□□□□□ -0.48
ATG4A-201ENST00000343524 ERICH6Q7L0X2 663 aa12.06□□□□□ -0.48
ATG4A-201ENST00000343524 SLC24A1O60721 1099 aa12.03□□□□□ -0.48
ATG4A-201ENST00000343524 FANCD2Q9BXW9 1451 aa12.01□□□□□ -0.49
ATG4A-201ENST00000343524 RSF1Q96T23 1441 aaPredicted RBP12.01□□□□□ -0.49
ATG4A-201ENST00000343524 ZBTB12Q9Y330 459 aaPredicted RBP11.99□□□□□ -0.49
ATG4A-201ENST00000343524 CHRDL2Q6WN34 429 aa11.98□□□□□ -0.49
ATG4A-201ENST00000343524 YTHDC1Q96MU7 727 aaKnown RBP11.98□□□□□ -0.49
ATG4A-201ENST00000343524 URB2Q14146 1524 aaKnown RBP11.97□□□□□ -0.49
ATG4A-201ENST00000343524 PRKCSHP14314 528 aaPredicted RBP11.96□□□□□ -0.5
ATG4A-201ENST00000343524 ZNF608Q9ULD9 1512 aaPredicted RBP11.94□□□□□ -0.5
ATG4A-201ENST00000343524 AKT1S1Q96B36 256 aa11.92□□□□□ -0.5
ATG4A-201ENST00000343524 ATXN8OSP0DMR3 200 aa11.91□□□□□ -0.5
ATG4A-201ENST00000343524 SUPT16HQ9Y5B9 1047 aaKnown RBP11.91□□□□□ -0.5
ATG4A-201ENST00000343524 IFT140Q96RY7 1462 aa11.9□□□□□ -0.5
ATG4A-201ENST00000343524 TSHZ2Q9NRE2 1034 aa11.9□□□□□ -0.5
ATG4A-201ENST00000343524 WRNQ14191 1432 aaPredicted RBP eCLIP11.9□□□□□ -0.5
ATG4A-201ENST00000343524 CHD1O14646 1710 aa11.89□□□□□ -0.51
ATG4A-201ENST00000343524 CSRNP3Q8WYN3 585 aa11.89□□□□□ -0.51
ATG4A-201ENST00000343524 MIER1Q8N108 512 aa11.86□□□□□ -0.51
ATG4A-201ENST00000343524 CFTRP13569 1480 aa11.86□□□□□ -0.51
ATG4A-201ENST00000343524 MROH2BQ7Z745 1585 aa11.85□□□□□ -0.51
ATG4A-201ENST00000343524 MYT1LQ9UL68 1186 aa11.84□□□□□ -0.51
ATG4A-201ENST00000343524 EIF4G3O43432 1585 aaKnown RBP11.83□□□□□ -0.52
ATG4A-201ENST00000343524 REM2Q8IYK8 340 aaPredicted RBP11.82□□□□□ -0.52
ATG4A-201ENST00000343524 KDM4FA0A1W2PPD8 638 aa11.81□□□□□ -0.52
ATG4A-201ENST00000343524 CLASP1Q7Z460 1538 aa11.78□□□□□ -0.52
ATG4A-201ENST00000343524 FBLN2P98095 1184 aa11.78□□□□□ -0.52
ATG4A-201ENST00000343524 AQRO60306 1485 aaKnown RBP eCLIP11.73□□□□□ -0.531e-6■■■■■ 33.8
ATG4A-201ENST00000343524 GAPVD1Q14C86 1478 aa11.71□□□□□ -0.54
ATG4A-201ENST00000343524 ERCC6L2Q5T890 1561 aa11.7□□□□□ -0.54
ATG4A-201ENST00000343524 PIP4P2Q8N4L2 257 aa11.7□□□□□ -0.54
ATG4A-201ENST00000343524 PITPNM1O00562 1244 aa11.7□□□□□ -0.54
ATG4A-201ENST00000343524 FBXO41Q8TF61 875 aa11.7□□□□□ -0.54
ATG4A-201ENST00000343524 TOPBP1Q92547 1522 aa11.7□□□□□ -0.54
ATG4A-201ENST00000343524 EHMT2Q96KQ7 1210 aa11.68□□□□□ -0.54
ATG4A-201ENST00000343524 SYNJ1O43426 1573 aa11.67□□□□□ -0.54
ATG4A-201ENST00000343524 TARBP1Q13395 1621 aaKnown RBP11.67□□□□□ -0.54
ATG4A-201ENST00000343524 KIF13AQ9H1H9 1805 aa11.65□□□□□ -0.54
ATG4A-201ENST00000343524 WIZO95785 1651 aa11.65□□□□□ -0.55
ATG4A-201ENST00000343524 MKRN4PQ13434 485 aaPredicted RBP11.64□□□□□ -0.55
ATG4A-201ENST00000343524 CEP162Q5TB80 1403 aa11.64□□□□□ -0.55
ATG4A-201ENST00000343524 SPDYE2BA6NHP3 402 aa11.64□□□□□ -0.55
ATG4A-201ENST00000343524 SPDYE6P0CI01 402 aa11.64□□□□□ -0.55
ATG4A-201ENST00000343524 SPDYE2Q495Y8 402 aa11.64□□□□□ -0.55
ATG4A-201ENST00000343524 PRDM2Q13029 1718 aa11.64□□□□□ -0.55
ATG4A-201ENST00000343524 ABCC8Q09428 1581 aa11.64□□□□□ -0.55
ATG4A-201ENST00000343524 FXR2P51116 673 aaKnown RBP eCLIP11.63□□□□□ -0.55
ATG4A-201ENST00000343524 LMTK3Q96Q04 1460 aa11.62□□□□□ -0.55
ATG4A-201ENST00000343524 HECW2Q9P2P5 1572 aa11.61□□□□□ -0.55
ATG4A-201ENST00000343524 RBM19Q9Y4C8 960 aaKnown RBP11.61□□□□□ -0.55
ATG4A-201ENST00000343524 TNIKQ9UKE5 1360 aa11.6□□□□□ -0.55
ATG4A-201ENST00000343524 NEFLP07196 543 aa11.6□□□□□ -0.55
ATG4A-201ENST00000343524 FANCIQ9NVI1 1328 aa11.59□□□□□ -0.55
ATG4A-201ENST00000343524 ERICH6BQ5W0A0 696 aa11.59□□□□□ -0.55
ATG4A-201ENST00000343524 SNAPC4Q5SXM2 1469 aa11.59□□□□□ -0.55
ATG4A-201ENST00000343524 CHMP7Q8WUX9 453 aaPredicted RBP11.58□□□□□ -0.55
ATG4A-201ENST00000343524 DNMBPQ6XZF7 1577 aa11.58□□□□□ -0.56
ATG4A-201ENST00000343524 EEA1Q15075 1411 aa11.58□□□□□ -0.56
ATG4A-201ENST00000343524 SOCS7O14512 581 aa11.58□□□□□ -0.56
ATG4A-201ENST00000343524 SP7Q8TDD2 431 aaPredicted RBP11.58□□□□□ -0.56
ATG4A-201ENST00000343524 MAGI1Q96QZ7 1491 aaPredicted RBP11.54□□□□□ -0.56
ATG4A-201ENST00000343524 KDM6BO15054 1643 aa11.53□□□□□ -0.56
ATG4A-201ENST00000343524 TDRD9Q8NDG6 1382 aaKnown RBP11.52□□□□□ -0.56
ATG4A-201ENST00000343524 SYNJ2O15056 1496 aa11.51□□□□□ -0.57
ATG4A-201ENST00000343524 POLA1P09884 1462 aaPredicted RBP11.51□□□□□ -0.57
ATG4A-201ENST00000343524 SSUH2Q9Y2M2 353 aa11.51□□□□□ -0.57
ATG4A-201ENST00000343524 WDR97A6NE52 1622 aa11.51□□□□□ -0.57
ATG4A-201ENST00000343524 ADGRL1O94910 1474 aa11.5□□□□□ -0.57
ATG4A-201ENST00000343524 FKBP8Q14318 412 aa11.5□□□□□ -0.57
ATG4A-201ENST00000343524 ABCC10Q5T3U5 1492 aa11.5□□□□□ -0.57
ATG4A-201ENST00000343524 FAM69CQ0P6D2 419 aa11.49□□□□□ -0.57
ATG4A-201ENST00000343524 ILDR2Q71H61 639 aa11.48□□□□□ -0.57
ATG4A-201ENST00000343524 RAD54L2Q9Y4B4 1467 aa11.47□□□□□ -0.57
ATG4A-201ENST00000343524 ZNF692Q9BU19 519 aaPredicted RBP11.47□□□□□ -0.57
ATG4A-201ENST00000343524 TOP2AP11388 1531 aaKnown RBP11.47□□□□□ -0.57
ATG4A-201ENST00000343524 GOLGA3Q08378 1498 aa11.46□□□□□ -0.57
ATG4A-201ENST00000343524 GRIN2BQ13224 1484 aa11.46□□□□□ -0.58
ATG4A-201ENST00000343524 HAX1O00165 279 aa11.45□□□□□ -0.58
ATG4A-201ENST00000343524 SOGA1O94964 1423 aa11.45□□□□□ -0.58
ATG4A-201ENST00000343524 DEKP35659 375 aaKnown RBP11.45□□□□□ -0.58
ATG4A-201ENST00000343524 BCANQ96GW7 911 aa11.45□□□□□ -0.58
ATG4A-201ENST00000343524 SPDYE1Q8NFV5 336 aaPredicted RBP11.44□□□□□ -0.58
ATG4A-201ENST00000343524 DIP2BQ9P265 1576 aa11.43□□□□□ -0.58
ATG4A-201ENST00000343524 CDK11AQ9UQ88 783 aaPredicted RBP11.42□□□□□ -0.58
ATG4A-201ENST00000343524 CEP170Q5SW79 1584 aa11.42□□□□□ -0.58
ATG4A-201ENST00000343524 CLEC11AQ9Y240 323 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms