RNA–Protein interactions for RNA: ENST00000342310.7

LMX1A-202, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,545 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-202ENST00000342310 BICRAQ9NZM4 1560 aa17.67■□□□□ 0.42
LMX1A-202ENST00000342310 HNRNPUQ00839 825 aaKnown RBP eCLIP17.67■□□□□ 0.42
LMX1A-202ENST00000342310 ZNF777Q9ULD5 760 aaPredicted RBP17.67■□□□□ 0.42
LMX1A-202ENST00000342310 TONSLQ96HA7 1378 aa17.67■□□□□ 0.42
LMX1A-202ENST00000342310 UNC13AQ9UPW8 1703 aa17.64■□□□□ 0.41
LMX1A-202ENST00000342310 FAM9BQ8IZU0 186 aa17.64■□□□□ 0.41
LMX1A-202ENST00000342310 MTUS2Q5JR59 1369 aa17.63■□□□□ 0.41
LMX1A-202ENST00000342310 ERICH6Q7L0X2 663 aa17.63■□□□□ 0.41
LMX1A-202ENST00000342310 FHOD3Q2V2M9 1422 aa17.61■□□□□ 0.41
LMX1A-202ENST00000342310 TDRD9Q8NDG6 1382 aaKnown RBP17.59■□□□□ 0.41
LMX1A-202ENST00000342310 IGF1RP08069 1367 aa17.56■□□□□ 0.4
LMX1A-202ENST00000342310 DNAJC5BQ9UF47 199 aa17.56■□□□□ 0.4
LMX1A-202ENST00000342310 PHLDB1Q86UU1 1377 aa17.54■□□□□ 0.4
LMX1A-202ENST00000342310 SALL2Q9Y467 1007 aaPredicted RBP17.53■□□□□ 0.4
LMX1A-202ENST00000342310 SETD5Q9C0A6 1442 aa17.52■□□□□ 0.4
LMX1A-202ENST00000342310 CLSPNQ9HAW4 1339 aa17.5■□□□□ 0.39
LMX1A-202ENST00000342310 ARHGAP35Q9NRY4 1499 aa17.5■□□□□ 0.39
LMX1A-202ENST00000342310 TSHZ2Q9NRE2 1034 aa17.49■□□□□ 0.39
LMX1A-202ENST00000342310 CUX1P39880 1505 aa17.49■□□□□ 0.39
LMX1A-202ENST00000342310 RAD54L2Q9Y4B4 1467 aa17.49■□□□□ 0.39
LMX1A-202ENST00000342310 PRXQ9BXM0 1461 aa17.47■□□□□ 0.39
LMX1A-202ENST00000342310 PPP1R15AO75807 674 aaPredicted RBP17.46■□□□□ 0.38
LMX1A-202ENST00000342310 CADPSQ9ULU8 1353 aa17.44■□□□□ 0.38
LMX1A-202ENST00000342310 KDM2AQ9Y2K7 1162 aa17.43■□□□□ 0.38
LMX1A-202ENST00000342310 MRS2Q9HD23 443 aa17.41■□□□□ 0.38
LMX1A-202ENST00000342310 FGD5Q6ZNL6 1462 aa17.4■□□□□ 0.38
LMX1A-202ENST00000342310 TOP2BQ02880 1626 aa17.39■□□□□ 0.38
LMX1A-202ENST00000342310 ANP32EQ9BTT0 268 aa17.38■□□□□ 0.37
LMX1A-202ENST00000342310 SLC4A1APQ9BWU0 796 aaKnown RBP17.38■□□□□ 0.37
LMX1A-202ENST00000342310 HSPA5P11021 654 aaKnown RBP17.37■□□□□ 0.37
LMX1A-202ENST00000342310 NESP48681 1621 aa17.36■□□□□ 0.37
LMX1A-202ENST00000342310 EIF4G2P78344 907 aaKnown RBP eCLIP17.34■□□□□ 0.37
LMX1A-202ENST00000342310 RRBP1Q9P2E9 1410 aaKnown RBP17.33■□□□□ 0.36
LMX1A-202ENST00000342310 FHAD1B1AJZ9 1412 aa17.32■□□□□ 0.36
LMX1A-202ENST00000342310 NCAPD3P42695 1498 aa17.32■□□□□ 0.36
LMX1A-202ENST00000342310 CDK11AQ9UQ88 783 aaPredicted RBP17.31■□□□□ 0.36
LMX1A-202ENST00000342310 B4GALNT3Q6L9W6 998 aa17.31■□□□□ 0.36
LMX1A-202ENST00000342310 CFTRP13569 1480 aa17.3■□□□□ 0.36
LMX1A-202ENST00000342310 MYT1LQ9UL68 1186 aa17.29■□□□□ 0.36
LMX1A-202ENST00000342310 L3MBTL2Q969R5 705 aa17.29■□□□□ 0.36
LMX1A-202ENST00000342310 WDR97A6NE52 1622 aa17.29■□□□□ 0.36
LMX1A-202ENST00000342310 ZNF644Q9H582 1327 aaPredicted RBP17.28■□□□□ 0.36
LMX1A-202ENST00000342310 LRRC9Q6ZRR7 1453 aa17.28■□□□□ 0.36
LMX1A-202ENST00000342310 FANCD2Q9BXW9 1451 aa17.28■□□□□ 0.36
LMX1A-202ENST00000342310 CCDC184Q52MB2 194 aa17.28■□□□□ 0.36
LMX1A-202ENST00000342310 RBM19Q9Y4C8 960 aaKnown RBP17.28■□□□□ 0.36
LMX1A-202ENST00000342310 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.27■□□□□ 0.36
LMX1A-202ENST00000342310 BCL11AQ9H165 835 aa17.27■□□□□ 0.36
LMX1A-202ENST00000342310 RGL3Q3MIN7 710 aa17.26■□□□□ 0.35
LMX1A-202ENST00000342310 MPHOSPH9Q99550 1183 aa17.24■□□□□ 0.35
LMX1A-202ENST00000342310 ERICH3Q5RHP9 1530 aa17.23■□□□□ 0.35
LMX1A-202ENST00000342310 SENP3Q9H4L4 574 aaPredicted RBP17.22■□□□□ 0.35
LMX1A-202ENST00000342310 PEG3Q9GZU2 1588 aa17.22■□□□□ 0.35
LMX1A-202ENST00000342310 NBR1Q14596 966 aa17.2■□□□□ 0.34
LMX1A-202ENST00000342310 NPM2Q86SE8 214 aaKnown RBP17.2■□□□□ 0.34
LMX1A-202ENST00000342310 CHMP7Q8WUX9 453 aaPredicted RBP17.2■□□□□ 0.34
LMX1A-202ENST00000342310 CFDP1Q9UEE9 299 aaPredicted RBP17.18■□□□□ 0.34
LMX1A-202ENST00000342310 CCDC18Q5T9S5 1454 aa17.16■□□□□ 0.34
LMX1A-202ENST00000342310 TMC1Q8TDI8 760 aa17.14■□□□□ 0.34
LMX1A-202ENST00000342310 WASHC2AQ641Q2 1341 aa17.14■□□□□ 0.33
LMX1A-202ENST00000342310 FGD6Q6ZV73 1430 aa17.13■□□□□ 0.33
LMX1A-202ENST00000342310 C11orf95C9JLR9 678 aaPredicted RBP17.13■□□□□ 0.33
LMX1A-202ENST00000342310 CCER2I3L3R5 266 aa17.13■□□□□ 0.33
LMX1A-202ENST00000342310 TIAM1Q13009 1591 aa17.12■□□□□ 0.33
LMX1A-202ENST00000342310 MAPKBP1O60336 1514 aa17.12■□□□□ 0.33
LMX1A-202ENST00000342310 FMN1Q68DA7 1419 aa17.11■□□□□ 0.33
LMX1A-202ENST00000342310 PDS5BQ9NTI5 1447 aa17.1■□□□□ 0.33
LMX1A-202ENST00000342310 AQRO60306 1485 aaKnown RBP eCLIP17.09■□□□□ 0.33
LMX1A-202ENST00000342310 PKD2Q13563 968 aa17.09■□□□□ 0.33
LMX1A-202ENST00000342310 POLA1P09884 1462 aaPredicted RBP17.09■□□□□ 0.33
LMX1A-202ENST00000342310 PTPRKQ15262 1439 aa17.08■□□□□ 0.33
LMX1A-202ENST00000342310 CCDC136Q96JN2 1154 aa17.08■□□□□ 0.32
LMX1A-202ENST00000342310 TIMELESSQ9UNS1 1208 aa17.08■□□□□ 0.32
LMX1A-202ENST00000342310 NBPF8Q3BBV2 869 aa17.07■□□□□ 0.32
LMX1A-202ENST00000342310 PCF11O94913 1555 aaKnown RBP17.06■□□□□ 0.32
LMX1A-202ENST00000342310 CARD11Q9BXL7 1154 aa17.06■□□□□ 0.32
LMX1A-202ENST00000342310 DCAF11Q8TEB1 546 aa17.05■□□□□ 0.32
LMX1A-202ENST00000342310 BIVM-ERCC5R4GMW8 1640 aa17.05■□□□□ 0.32
LMX1A-202ENST00000342310 TSPY4P0CV99 314 aa17.03■□□□□ 0.32
LMX1A-202ENST00000342310 TSPY10P0CW01 314 aa17.03■□□□□ 0.32
LMX1A-202ENST00000342310 NCOA2Q15596 1464 aa17.03■□□□□ 0.32
LMX1A-202ENST00000342310 PRKRIP1Q9H875 184 aaPredicted RBP17.03■□□□□ 0.32
LMX1A-202ENST00000342310 HMGXB3Q12766 1538 aa17.02■□□□□ 0.32
LMX1A-202ENST00000342310 GAPVD1Q14C86 1478 aa17.01■□□□□ 0.31
LMX1A-202ENST00000342310 CC2D2AQ9P2K1 1620 aa17.01■□□□□ 0.31
LMX1A-202ENST00000342310 TOPBP1Q92547 1522 aa17■□□□□ 0.31
LMX1A-202ENST00000342310 CC2D1BQ5T0F9 858 aaKnown RBP17■□□□□ 0.31
LMX1A-202ENST00000342310 CASKIN1Q8WXD9 1431 aa17■□□□□ 0.31
LMX1A-202ENST00000342310 HNRNPMP52272 730 aaKnown RBP eCLIP16.99■□□□□ 0.31
LMX1A-202ENST00000342310 PLEKHD1A6NEE1 506 aa16.98■□□□□ 0.31
LMX1A-202ENST00000342310 MYOM3Q5VTT5 1437 aa16.97■□□□□ 0.31
LMX1A-202ENST00000342310 UACAQ9BZF9 1416 aa16.97■□□□□ 0.31
LMX1A-202ENST00000342310 NAIPQ13075 1403 aa16.96■□□□□ 0.31
LMX1A-202ENST00000342310 PPP4R2Q9NY27 417 aa16.95■□□□□ 0.3
LMX1A-202ENST00000342310 KIF7Q2M1P5 1343 aa16.94■□□□□ 0.3
LMX1A-202ENST00000342310 ST20-MTHFSA0A0A6YYL1 179 aa16.93■□□□□ 0.3
LMX1A-202ENST00000342310 CDK13Q14004 1512 aaKnown RBP16.91■□□□□ 0.3
LMX1A-202ENST00000342310 RTN4Q9NQC3 1192 aaKnown RBP16.91■□□□□ 0.3
LMX1A-202ENST00000342310 NUP155O75694 1391 aa16.9■□□□□ 0.3
LMX1A-202ENST00000342310 FYCO1Q9BQS8 1478 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms