RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 TIMELESSQ9UNS1 1208 aa25.69■■□□□ 1.7
SMPD1-201ENST00000342245 MAPKBP1O60336 1514 aa25.64■■□□□ 1.7
SMPD1-201ENST00000342245 SYNJ1O43426 1573 aa25.63■■□□□ 1.69
SMPD1-201ENST00000342245 RTL5Q5HYW3 569 aaPredicted RBP25.61■■□□□ 1.69
SMPD1-201ENST00000342245 WDR97A6NE52 1622 aa25.59■■□□□ 1.69
SMPD1-201ENST00000342245 CCNB3Q8WWL7 1395 aa25.56■■□□□ 1.68
SMPD1-201ENST00000342245 NBR1Q14596 966 aa25.54■■□□□ 1.68
SMPD1-201ENST00000342245 RAPGEF2Q9Y4G8 1499 aa25.53■■□□□ 1.68
SMPD1-201ENST00000342245 RAB3GAP2Q9H2M9 1393 aa25.48■■□□□ 1.67
SMPD1-201ENST00000342245 CCDC136Q96JN2 1154 aa25.48■■□□□ 1.67
SMPD1-201ENST00000342245 ARAP1Q96P48 1450 aa25.44■■□□□ 1.66
SMPD1-201ENST00000342245 PAK3O75914 559 aaPredicted RBP25.44■■□□□ 1.66
SMPD1-201ENST00000342245 HNRNPUQ00839 825 aaKnown RBP eCLIP25.43■■□□□ 1.66
SMPD1-201ENST00000342245 IL27Q8NEV9 243 aa25.43■■□□□ 1.66
SMPD1-201ENST00000342245 ANP32AP39687 249 aaKnown RBP25.42■■□□□ 1.66
SMPD1-201ENST00000342245 IPO9Q96P70 1041 aaKnown RBP25.42■■□□□ 1.66
SMPD1-201ENST00000342245 ERICH3Q5RHP9 1530 aa25.42■■□□□ 1.66
SMPD1-201ENST00000342245 KANK4Q5T7N3 995 aaPredicted RBP25.4■■□□□ 1.66
SMPD1-201ENST00000342245 IRX6P78412 446 aaPredicted RBP25.4■■□□□ 1.66
SMPD1-201ENST00000342245 SETD5Q9C0A6 1442 aa25.4■■□□□ 1.66
SMPD1-201ENST00000342245 WASHC2AQ641Q2 1341 aa25.36■■□□□ 1.65
SMPD1-201ENST00000342245 ZBTB47Q9UFB7 747 aaPredicted RBP25.36■■□□□ 1.65
SMPD1-201ENST00000342245 C11orf95C9JLR9 678 aaPredicted RBP25.35■■□□□ 1.65
SMPD1-201ENST00000342245 USP35Q9P2H5 1018 aa25.35■■□□□ 1.65
SMPD1-201ENST00000342245 RANGAP1P46060 587 aaPredicted RBP25.29■■□□□ 1.64
SMPD1-201ENST00000342245 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.29■■□□□ 1.64
SMPD1-201ENST00000342245 TOP2BQ02880 1626 aa25.28■■□□□ 1.64
SMPD1-201ENST00000342245 B4GALNT3Q6L9W6 998 aa25.25■■□□□ 1.63
SMPD1-201ENST00000342245 RTN4Q9NQC3 1192 aaKnown RBP25.24■■□□□ 1.63
SMPD1-201ENST00000342245 WASHC2CQ9Y4E1 1318 aa25.23■■□□□ 1.63
SMPD1-201ENST00000342245 NCAPD3P42695 1498 aa25.22■■□□□ 1.63
SMPD1-201ENST00000342245 SIN3AQ96ST3 1273 aa25.22■■□□□ 1.63
SMPD1-201ENST00000342245 MAP3K1Q13233 1512 aa25.21■■□□□ 1.63
SMPD1-201ENST00000342245 PRXQ9BXM0 1461 aa25.19■■□□□ 1.62
SMPD1-201ENST00000342245 HMGXB3Q12766 1538 aa25.18■■□□□ 1.62
SMPD1-201ENST00000342245 BIVM-ERCC5R4GMW8 1640 aa25.18■■□□□ 1.62
SMPD1-201ENST00000342245 ZBED9Q6R2W3 1325 aa25.15■■□□□ 1.62
SMPD1-201ENST00000342245 HIRIP3Q9BW71 556 aaPredicted RBP25.12■■□□□ 1.61
SMPD1-201ENST00000342245 FHAD1B1AJZ9 1412 aa25.12■■□□□ 1.61
SMPD1-201ENST00000342245 CUX1P39880 1505 aa25.1■■□□□ 1.61
SMPD1-201ENST00000342245 PPM1GO15355 546 aaPredicted RBP25.09■■□□□ 1.61
SMPD1-201ENST00000342245 TONSLQ96HA7 1378 aa25.08■■□□□ 1.61
SMPD1-201ENST00000342245 PKNOX2Q96KN3 472 aa25.05■■□□□ 1.6
SMPD1-201ENST00000342245 TIAM1Q13009 1591 aa25.04■■□□□ 1.6
SMPD1-201ENST00000342245 NEFMP07197 916 aa25.03■■□□□ 1.6
SMPD1-201ENST00000342245 CFTRP13569 1480 aa25.02■■□□□ 1.6
SMPD1-201ENST00000342245 RSPH6AQ9H0K4 717 aa25■■□□□ 1.59
SMPD1-201ENST00000342245 NCOA2Q15596 1464 aa24.98■■□□□ 1.59
SMPD1-201ENST00000342245 ARHGAP35Q9NRY4 1499 aa24.98■■□□□ 1.59
SMPD1-201ENST00000342245 SMG6Q86US8 1419 aaKnown RBP24.97■■□□□ 1.59
SMPD1-201ENST00000342245 EIF5BO60841 1220 aaKnown RBP24.97■■□□□ 1.59
SMPD1-201ENST00000342245 RNF123Q5XPI4 1314 aa24.96■■□□□ 1.59
SMPD1-201ENST00000342245 CNTLNQ9NXG0 1405 aa24.95■■□□□ 1.58
SMPD1-201ENST00000342245 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.94■■□□□ 1.58
SMPD1-201ENST00000342245 KIF27Q86VH2 1401 aa24.94■■□□□ 1.58
SMPD1-201ENST00000342245 LRRC9Q6ZRR7 1453 aa24.92■■□□□ 1.58
SMPD1-201ENST00000342245 GSE1Q14687 1217 aa24.89■■□□□ 1.58
SMPD1-201ENST00000342245 TCERG1O14776 1098 aaKnown RBP24.87■■□□□ 1.57
SMPD1-201ENST00000342245 BRPF3Q9ULD4 1205 aa24.87■■□□□ 1.57
SMPD1-201ENST00000342245 GLIPR1L2Q4G1C9 344 aa24.86■■□□□ 1.57
SMPD1-201ENST00000342245 PHLDB1Q86UU1 1377 aa24.84■■□□□ 1.57
SMPD1-201ENST00000342245 PRKRIP1Q9H875 184 aaPredicted RBP24.83■■□□□ 1.57
SMPD1-201ENST00000342245 MRS2Q9HD23 443 aa24.83■■□□□ 1.56
SMPD1-201ENST00000342245 NUDCQ9Y266 331 aa24.82■■□□□ 1.56
SMPD1-201ENST00000342245 FAM50AQ14320 339 aaKnown RBP24.81■■□□□ 1.56
SMPD1-201ENST00000342245 FAM9BQ8IZU0 186 aa24.81■■□□□ 1.56
SMPD1-201ENST00000342245 DDRGK1Q96HY6 314 aa24.81■■□□□ 1.56
SMPD1-201ENST00000342245 CFAP43Q8NDM7 1665 aa24.81■■□□□ 1.56
SMPD1-201ENST00000342245 FAM43AQ8N2R8 423 aa24.8■■□□□ 1.56
SMPD1-201ENST00000342245 LAS1LQ9Y4W2 734 aaKnown RBP24.8■■□□□ 1.56
SMPD1-201ENST00000342245 UACAQ9BZF9 1416 aa24.8■■□□□ 1.56
SMPD1-201ENST00000342245 MS4A1P11836 297 aa24.8■■□□□ 1.56
SMPD1-201ENST00000342245 KDM5BQ9UGL1 1544 aa24.77■■□□□ 1.56
SMPD1-201ENST00000342245 CCDC184Q52MB2 194 aa24.76■■□□□ 1.55
SMPD1-201ENST00000342245 CADPSQ9ULU8 1353 aa24.76■■□□□ 1.55
SMPD1-201ENST00000342245 AKNAQ7Z591 1439 aa24.76■■□□□ 1.55
SMPD1-201ENST00000342245 HSPA5P11021 654 aaKnown RBP24.74■■□□□ 1.55
SMPD1-201ENST00000342245 EIF4G2P78344 907 aaKnown RBP eCLIP24.73■■□□□ 1.55
SMPD1-201ENST00000342245 PRDM2Q13029 1718 aa24.73■■□□□ 1.55
SMPD1-201ENST00000342245 CCDC18Q5T9S5 1454 aa24.72■■□□□ 1.55
SMPD1-201ENST00000342245 NPM2Q86SE8 214 aaKnown RBP24.71■■□□□ 1.55
SMPD1-201ENST00000342245 IGF1RP08069 1367 aa24.71■■□□□ 1.55
SMPD1-201ENST00000342245 PDE4AP27815 886 aa24.71■■□□□ 1.55
SMPD1-201ENST00000342245 BACH2Q9BYV9 841 aa24.7■■□□□ 1.54
SMPD1-201ENST00000342245 NCOA1Q15788 1441 aa24.69■■□□□ 1.54
SMPD1-201ENST00000342245 ABCA5Q8WWZ7 1642 aa24.68■■□□□ 1.54
SMPD1-201ENST00000342245 CCDC7Q96M83 1385 aa24.66■■□□□ 1.54
SMPD1-201ENST00000342245 FGD5Q6ZNL6 1462 aa24.66■■□□□ 1.54
SMPD1-201ENST00000342245 HFM1A2PYH4 1435 aa24.66■■□□□ 1.54
SMPD1-201ENST00000342245 CC2D2AQ9P2K1 1620 aa24.64■■□□□ 1.53
SMPD1-201ENST00000342245 POLR1AO95602 1720 aaPredicted RBP24.63■■□□□ 1.53
SMPD1-201ENST00000342245 NFKBIBQ15653 356 aa24.62■■□□□ 1.53
SMPD1-201ENST00000342245 FRAT1Q92837 279 aaPredicted RBP24.61■■□□□ 1.53
SMPD1-201ENST00000342245 PTPN23Q9H3S7 1636 aa24.61■■□□□ 1.53
SMPD1-201ENST00000342245 CARMIL1Q5VZK9 1371 aa24.6■■□□□ 1.53
SMPD1-201ENST00000342245 FANCD2Q9BXW9 1451 aa24.53■■□□□ 1.52
SMPD1-201ENST00000342245 ZMYND15Q9H091 742 aa24.52■■□□□ 1.52
SMPD1-201ENST00000342245 DAXXQ9UER7 740 aaPredicted RBP24.51■■□□□ 1.51
SMPD1-201ENST00000342245 FMN1Q68DA7 1419 aa24.51■■□□□ 1.51
SMPD1-201ENST00000342245 FGD6Q6ZV73 1430 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms