RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 NEUROD1Q13562 356 aa21.56■■□□□ 1.04
TDP2-201ENST00000341060 CFAP43Q8NDM7 1665 aa21.54■■□□□ 1.04
TDP2-201ENST00000341060 CENPBP07199 599 aaPredicted RBP21.54■■□□□ 1.04
TDP2-201ENST00000341060 CUL7Q14999 1698 aa21.54■■□□□ 1.04
TDP2-201ENST00000341060 POLA1P09884 1462 aaPredicted RBP21.53■■□□□ 1.04
TDP2-201ENST00000341060 RAD54L2Q9Y4B4 1467 aa21.51■■□□□ 1.03
TDP2-201ENST00000341060 CTTNBP2Q8WZ74 1663 aa21.51■■□□□ 1.03
TDP2-201ENST00000341060 MRC2Q9UBG0 1479 aa21.5■■□□□ 1.03
TDP2-201ENST00000341060 WDR97A6NE52 1622 aa21.5■■□□□ 1.03
TDP2-201ENST00000341060 FHAD1B1AJZ9 1412 aa21.5■■□□□ 1.03
TDP2-201ENST00000341060 PCF11O94913 1555 aaKnown RBP21.48■■□□□ 1.03
TDP2-201ENST00000341060 LRRC9Q6ZRR7 1453 aa21.48■■□□□ 1.03
TDP2-201ENST00000341060 EFCAB5A4FU69 1503 aa21.46■■□□□ 1.03
TDP2-201ENST00000341060 FYCO1Q9BQS8 1478 aa21.38■■□□□ 1.01
TDP2-201ENST00000341060 WDR62O43379 1518 aa21.38■■□□□ 1.01
TDP2-201ENST00000341060 ABCA5Q8WWZ7 1642 aa21.37■■□□□ 1.01
TDP2-201ENST00000341060 AQRO60306 1485 aaKnown RBP eCLIP21.36■■□□□ 1.011e-6■■■■□ 26.1
TDP2-201ENST00000341060 MIER1Q8N108 512 aa21.36■■□□□ 1.01
TDP2-201ENST00000341060 PHLDB1Q86UU1 1377 aa21.35■■□□□ 1.01
TDP2-201ENST00000341060 THOC2Q8NI27 1593 aaKnown RBP21.35■■□□□ 1.01
TDP2-201ENST00000341060 FHOD3Q2V2M9 1422 aa21.34■■□□□ 1.01
TDP2-201ENST00000341060 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
TDP2-201ENST00000341060 RAB3GAP2Q9H2M9 1393 aa21.33■■□□□ 1.01
TDP2-201ENST00000341060 CASKIN1Q8WXD9 1431 aa21.32■■□□□ 1
TDP2-201ENST00000341060 GTF3C3Q9Y5Q9 886 aa21.32■■□□□ 1
TDP2-201ENST00000341060 ITGAEP38570 1179 aa21.31■■□□□ 1
TDP2-201ENST00000341060 MAPKBP1O60336 1514 aa21.3■■□□□ 1
TDP2-201ENST00000341060 TARBP1Q13395 1621 aaKnown RBP21.29■■□□□ 1
TDP2-201ENST00000341060 PELP1Q8IZL8 1130 aaKnown RBP21.28■■□□□ 1
TDP2-201ENST00000341060 P3H3Q8IVL6 736 aa21.28■■□□□ 1
TDP2-201ENST00000341060 SETD5Q9C0A6 1442 aa21.28■■□□□ 1
TDP2-201ENST00000341060 SAMD9Q5K651 1589 aa21.27■■□□□ 1
TDP2-201ENST00000341060 FMN1Q68DA7 1419 aa21.26■□□□□ 0.99
TDP2-201ENST00000341060 SNAPC4Q5SXM2 1469 aa21.24■□□□□ 0.99
TDP2-201ENST00000341060 GAPVD1Q14C86 1478 aa21.23■□□□□ 0.99
TDP2-201ENST00000341060 LRRIQ1Q96JM4 1722 aa21.22■□□□□ 0.99
TDP2-201ENST00000341060 YTHDC1Q96MU7 727 aaKnown RBP21.22■□□□□ 0.99
TDP2-201ENST00000341060 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.21■□□□□ 0.99
TDP2-201ENST00000341060 IFT140Q96RY7 1462 aa21.21■□□□□ 0.99
TDP2-201ENST00000341060 ZNF608Q9ULD9 1512 aaPredicted RBP21.19■□□□□ 0.98
TDP2-201ENST00000341060 FAM50AQ14320 339 aaKnown RBP21.17■□□□□ 0.98
TDP2-201ENST00000341060 ATP1B4Q9UN42 357 aaPredicted RBP21.17■□□□□ 0.98
TDP2-201ENST00000341060 PBRM1Q86U86 1689 aa21.14■□□□□ 0.97
TDP2-201ENST00000341060 FGD6Q6ZV73 1430 aa21.12■□□□□ 0.97
TDP2-201ENST00000341060 GRIN2BQ13224 1484 aa21.11■□□□□ 0.97
TDP2-201ENST00000341060 SUPT6HQ7KZ85 1726 aaKnown RBP21.08■□□□□ 0.97
TDP2-201ENST00000341060 MTUS2Q5JR59 1369 aa21.07■□□□□ 0.96
TDP2-201ENST00000341060 EIF4G3O43432 1585 aaKnown RBP21.06■□□□□ 0.96
TDP2-201ENST00000341060 EHBP1L1Q8N3D4 1523 aa21.05■□□□□ 0.96
TDP2-201ENST00000341060 NCOA2Q15596 1464 aa21.02■□□□□ 0.96
TDP2-201ENST00000341060 ADAMTS12P58397 1594 aa21.01■□□□□ 0.95
TDP2-201ENST00000341060 MYOM3Q5VTT5 1437 aa21.01■□□□□ 0.95
TDP2-201ENST00000341060 TIMELESSQ9UNS1 1208 aa21.01■□□□□ 0.95
TDP2-201ENST00000341060 PTPN23Q9H3S7 1636 aa21■□□□□ 0.95
TDP2-201ENST00000341060 IQGAP2Q13576 1575 aa20.99■□□□□ 0.95
TDP2-201ENST00000341060 HFM1A2PYH4 1435 aa20.99■□□□□ 0.95
TDP2-201ENST00000341060 CCDC18Q5T9S5 1454 aa20.99■□□□□ 0.95
TDP2-201ENST00000341060 ARHGEF11O15085 1522 aa20.98■□□□□ 0.95
TDP2-201ENST00000341060 HECW1Q76N89 1606 aa20.98■□□□□ 0.95
TDP2-201ENST00000341060 UGGT2Q9NYU1 1516 aa20.98■□□□□ 0.95
TDP2-201ENST00000341060 SIN3AQ96ST3 1273 aa20.97■□□□□ 0.95
TDP2-201ENST00000341060 MAGI3Q5TCQ9 1506 aa20.95■□□□□ 0.94
TDP2-201ENST00000341060 PTPRKQ15262 1439 aa20.95■□□□□ 0.94
TDP2-201ENST00000341060 UACAQ9BZF9 1416 aa20.93■□□□□ 0.94
TDP2-201ENST00000341060 FBLN2P98095 1184 aa20.9■□□□□ 0.94
TDP2-201ENST00000341060 NAIPQ13075 1403 aa20.89■□□□□ 0.94
TDP2-201ENST00000341060 GCC2Q8IWJ2 1684 aa20.89■□□□□ 0.93
TDP2-201ENST00000341060 TCOF1Q13428 1488 aaKnown RBP20.87■□□□□ 0.93
TDP2-201ENST00000341060 EPRSP07814 1512 aaKnown RBP20.87■□□□□ 0.93
TDP2-201ENST00000341060 CHMP7Q8WUX9 453 aaPredicted RBP20.86■□□□□ 0.93
TDP2-201ENST00000341060 MAGI1Q96QZ7 1491 aaPredicted RBP20.86■□□□□ 0.93
TDP2-201ENST00000341060 PPP1R15AO75807 674 aaPredicted RBP20.84■□□□□ 0.93
TDP2-201ENST00000341060 SYNJ2O15056 1496 aa20.81■□□□□ 0.92
TDP2-201ENST00000341060 GRIN2AQ12879 1464 aa20.8■□□□□ 0.92
TDP2-201ENST00000341060 CDK13Q14004 1512 aaKnown RBP20.8■□□□□ 0.92
TDP2-201ENST00000341060 AKNAQ7Z591 1439 aa20.79■□□□□ 0.92
TDP2-201ENST00000341060 TONSLQ96HA7 1378 aa20.79■□□□□ 0.92
TDP2-201ENST00000341060 MIA2Q96PC5 1412 aa20.78■□□□□ 0.92
TDP2-201ENST00000341060 KIAA0556O60303 1618 aa20.78■□□□□ 0.92
TDP2-201ENST00000341060 KIAA0586Q9BVV6 1533 aa20.74■□□□□ 0.91
TDP2-201ENST00000341060 DDX10Q13206 875 aaKnown RBP20.74■□□□□ 0.91
TDP2-201ENST00000341060 KDM5BQ9UGL1 1544 aa20.73■□□□□ 0.91
TDP2-201ENST00000341060 DISP1Q96F81 1524 aa20.72■□□□□ 0.91
TDP2-201ENST00000341060 KDM6BO15054 1643 aa20.7■□□□□ 0.9
TDP2-201ENST00000341060 RAPGEF6Q8TEU7 1601 aa20.7■□□□□ 0.9
TDP2-201ENST00000341060 DENND4BO75064 1496 aaPredicted RBP20.68■□□□□ 0.9
TDP2-201ENST00000341060 CEP170Q5SW79 1584 aa20.68■□□□□ 0.9
TDP2-201ENST00000341060 KCNH8Q96L42 1107 aa20.68■□□□□ 0.9
TDP2-201ENST00000341060 RRP7BPQ9NSQ0 103 aa20.66■□□□□ 0.9
TDP2-201ENST00000341060 DNMT1P26358 1616 aaKnown RBP20.66■□□□□ 0.9
TDP2-201ENST00000341060 NUP153P49790 1475 aaKnown RBP20.65■□□□□ 0.9
TDP2-201ENST00000341060 HIRIP3Q9BW71 556 aaPredicted RBP20.63■□□□□ 0.89
TDP2-201ENST00000341060 CHIC2Q9UKJ5 165 aa20.63■□□□□ 0.89
TDP2-201ENST00000341060 NUP160Q12769 1436 aa20.63■□□□□ 0.89
TDP2-201ENST00000341060 SUPT16HQ9Y5B9 1047 aaKnown RBP20.63■□□□□ 0.89
TDP2-201ENST00000341060 CHD1O14646 1710 aa20.62■□□□□ 0.89
TDP2-201ENST00000341060 DAPK1P53355 1430 aa20.6■□□□□ 0.89
TDP2-201ENST00000341060 ROCK1Q13464 1354 aa20.6■□□□□ 0.89
TDP2-201ENST00000341060 CCER2I3L3R5 266 aa20.59■□□□□ 0.89
TDP2-201ENST00000341060 ITSN2Q9NZM3 1697 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms