RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CHIC2Q9UKJ5 165 aa14.36□□□□□ -0.11
USP54-201ENST00000339859 CFDP1Q9UEE9 299 aaPredicted RBP14.36□□□□□ -0.11
USP54-201ENST00000339859 RAPGEF2Q9Y4G8 1499 aa14.35□□□□□ -0.11
USP54-201ENST00000339859 FGD5Q6ZNL6 1462 aa14.32□□□□□ -0.12
USP54-201ENST00000339859 CCNB3Q8WWL7 1395 aa14.3□□□□□ -0.12
USP54-201ENST00000339859 CFTRP13569 1480 aa14.3□□□□□ -0.12
USP54-201ENST00000339859 GAPVD1Q14C86 1478 aa14.3□□□□□ -0.12
USP54-201ENST00000339859 CNGB1Q14028 1251 aaPredicted RBP14.28□□□□□ -0.12
USP54-201ENST00000339859 NEFLP07196 543 aa14.28□□□□□ -0.12
USP54-201ENST00000339859 LAMC3Q9Y6N6 1575 aa14.28□□□□□ -0.12
USP54-201ENST00000339859 IFT140Q96RY7 1462 aa14.27□□□□□ -0.13
USP54-201ENST00000339859 FMN1Q68DA7 1419 aa14.26□□□□□ -0.13
USP54-201ENST00000339859 NESP48681 1621 aa14.26□□□□□ -0.13
USP54-201ENST00000339859 JPH4Q96JJ6 628 aa14.24□□□□□ -0.13
USP54-201ENST00000339859 RAD54L2Q9Y4B4 1467 aa14.22□□□□□ -0.13
USP54-201ENST00000339859 TONSLQ96HA7 1378 aa14.22□□□□□ -0.13
USP54-201ENST00000339859 PPP1R15AO75807 674 aaPredicted RBP14.21□□□□□ -0.13
USP54-201ENST00000339859 GRIN2BQ13224 1484 aa14.2□□□□□ -0.14
USP54-201ENST00000339859 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
USP54-201ENST00000339859 RRP7BPQ9NSQ0 103 aa14.19□□□□□ -0.14
USP54-201ENST00000339859 YTHDC1Q96MU7 727 aaKnown RBP14.19□□□□□ -0.14
USP54-201ENST00000339859 HRCP23327 699 aa14.18□□□□□ -0.14
USP54-201ENST00000339859 KANK1Q14678 1352 aa14.17□□□□□ -0.14
USP54-201ENST00000339859 AQRO60306 1485 aaKnown RBP eCLIP14.17□□□□□ -0.142e-6■■■□□ 15.2
USP54-201ENST00000339859 DNMBPQ6XZF7 1577 aa14.15□□□□□ -0.14
USP54-201ENST00000339859 PTPRGP23470 1445 aa14.15□□□□□ -0.14
USP54-201ENST00000339859 TOPBP1Q92547 1522 aa14.14□□□□□ -0.15
USP54-201ENST00000339859 NEFMP07197 916 aa14.14□□□□□ -0.15
USP54-201ENST00000339859 CYB5RLQ6IPT4 315 aa14.13□□□□□ -0.15
USP54-201ENST00000339859 EFCAB2Q5VUJ9 269 aa14.13□□□□□ -0.15
USP54-201ENST00000339859 ARHGAP35Q9NRY4 1499 aa14.12□□□□□ -0.15
USP54-201ENST00000339859 PEG3Q9GZU2 1588 aa14.11□□□□□ -0.15
USP54-201ENST00000339859 VPS8Q8N3P4 1428 aa14.09□□□□□ -0.15
USP54-201ENST00000339859 CCDC18Q5T9S5 1454 aa14.09□□□□□ -0.15
USP54-201ENST00000339859 FHOD3Q2V2M9 1422 aa14.08□□□□□ -0.15
USP54-201ENST00000339859 ANP32CO43423 234 aa14.07□□□□□ -0.16
USP54-201ENST00000339859 C14orf37Q86TY3 774 aa14.07□□□□□ -0.16
USP54-201ENST00000339859 HDGFP51858 240 aaKnown RBP14.06□□□□□ -0.16
USP54-201ENST00000339859 IGF1RP08069 1367 aa14.06□□□□□ -0.16
USP54-201ENST00000339859 MLECQ14165 292 aa14.05□□□□□ -0.16
USP54-201ENST00000339859 KDM2AQ9Y2K7 1162 aa14.04□□□□□ -0.16
USP54-201ENST00000339859 TOP2BQ02880 1626 aa14.04□□□□□ -0.16
USP54-201ENST00000339859 POLA1P09884 1462 aaPredicted RBP14.03□□□□□ -0.16
USP54-201ENST00000339859 SNAPC4Q5SXM2 1469 aa14.03□□□□□ -0.16
USP54-201ENST00000339859 CUX1P39880 1505 aa14.01□□□□□ -0.17
USP54-201ENST00000339859 RSPH4AQ5TD94 716 aa14□□□□□ -0.17
USP54-201ENST00000339859 SLC24A1O60721 1099 aa14□□□□□ -0.17
USP54-201ENST00000339859 SYNJ1O43426 1573 aa13.99□□□□□ -0.17
USP54-201ENST00000339859 PRDM2Q13029 1718 aa13.98□□□□□ -0.17
USP54-201ENST00000339859 SCAF1Q9H7N4 1312 aaKnown RBP13.97□□□□□ -0.17
USP54-201ENST00000339859 DIEXFQ68CQ4 756 aaKnown RBP13.97□□□□□ -0.17
USP54-201ENST00000339859 RUSC2Q8N2Y8 1516 aa13.97□□□□□ -0.17
USP54-201ENST00000339859 PRG4Q92954 1404 aaPredicted RBP13.96□□□□□ -0.18
USP54-201ENST00000339859 ANKRD30AQ9BXX3 1397 aa13.96□□□□□ -0.18
USP54-201ENST00000339859 GGT6Q6P531 493 aa13.95□□□□□ -0.18
USP54-201ENST00000339859 SPAG9O60271 1321 aaKnown RBP13.94□□□□□ -0.18
USP54-201ENST00000339859 FAM69CQ0P6D2 419 aa13.94□□□□□ -0.18
USP54-201ENST00000339859 ZNF316A6NFI3 1004 aaPredicted RBP13.93□□□□□ -0.18
USP54-201ENST00000339859 RGL3Q3MIN7 710 aa13.93□□□□□ -0.18
USP54-201ENST00000339859 ERICH3Q5RHP9 1530 aa13.91□□□□□ -0.18
USP54-201ENST00000339859 SENP3Q9H4L4 574 aaPredicted RBP13.91□□□□□ -0.18
USP54-201ENST00000339859 ABCA10Q8WWZ4 1543 aa13.91□□□□□ -0.18
USP54-201ENST00000339859 MAGI1Q96QZ7 1491 aaPredicted RBP13.89□□□□□ -0.19
USP54-201ENST00000339859 SYNJ2O15056 1496 aa13.89□□□□□ -0.19
USP54-201ENST00000339859 HNRNPMP52272 730 aaKnown RBP eCLIP13.88□□□□□ -0.193e-6■■■■□ 21.2
USP54-201ENST00000339859 KIF21BO75037 1637 aa13.88□□□□□ -0.19
USP54-201ENST00000339859 CUL7Q14999 1698 aa13.88□□□□□ -0.19
USP54-201ENST00000339859 HAP1P54257 671 aaPredicted RBP13.88□□□□□ -0.19
USP54-201ENST00000339859 CDCA8Q53HL2 280 aa13.87□□□□□ -0.19
USP54-201ENST00000339859 ERICH6Q7L0X2 663 aa13.86□□□□□ -0.19
USP54-201ENST00000339859 URB2Q14146 1524 aaKnown RBP13.86□□□□□ -0.19
USP54-201ENST00000339859 POGKQ9P215 609 aa13.86□□□□□ -0.19
USP54-201ENST00000339859 EFCAB5A4FU69 1503 aa13.85□□□□□ -0.19
USP54-201ENST00000339859 KANK4Q5T7N3 995 aaPredicted RBP13.85□□□□□ -0.19
USP54-201ENST00000339859 KIF3BO15066 747 aa13.84□□□□□ -0.19
USP54-201ENST00000339859 AEBP2Q6ZN18 517 aaPredicted RBP13.83□□□□□ -0.2
USP54-201ENST00000339859 SETD5Q9C0A6 1442 aa13.83□□□□□ -0.2
USP54-201ENST00000339859 EIF4G2P78344 907 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP54-201ENST00000339859 WASHC2CQ9Y4E1 1318 aa13.82□□□□□ -0.2
USP54-201ENST00000339859 ZBTB7CA1YPR0 619 aa13.81□□□□□ -0.2
USP54-201ENST00000339859 ZBTB47Q9UFB7 747 aaPredicted RBP13.8□□□□□ -0.2
USP54-201ENST00000339859 CANXP27824 592 aaKnown RBP13.8□□□□□ -0.2
USP54-201ENST00000339859 EID1Q9Y6B2 187 aa13.8□□□□□ -0.2
USP54-201ENST00000339859 KIAA0586Q9BVV6 1533 aa13.8□□□□□ -0.2
USP54-201ENST00000339859 TMC1Q8TDI8 760 aa13.8□□□□□ -0.2
USP54-201ENST00000339859 NUP155O75694 1391 aa13.78□□□□□ -0.2
USP54-201ENST00000339859 CARD11Q9BXL7 1154 aa13.78□□□□□ -0.2
USP54-201ENST00000339859 GRIN2AQ12879 1464 aa13.77□□□□□ -0.2
USP54-201ENST00000339859 CASKIN1Q8WXD9 1431 aa13.77□□□□□ -0.21
USP54-201ENST00000339859 IQGAP2Q13576 1575 aa13.77□□□□□ -0.21
USP54-201ENST00000339859 HECW1Q76N89 1606 aa13.77□□□□□ -0.21
USP54-201ENST00000339859 BIVM-ERCC5R4GMW8 1640 aa13.77□□□□□ -0.21
USP54-201ENST00000339859 ARHGAP5Q13017 1502 aa13.76□□□□□ -0.21
USP54-201ENST00000339859 PKD2Q13563 968 aa13.76□□□□□ -0.21
USP54-201ENST00000339859 FYCO1Q9BQS8 1478 aa13.74□□□□□ -0.21
USP54-201ENST00000339859 KIF21AQ7Z4S6 1674 aa13.74□□□□□ -0.21
USP54-201ENST00000339859 WDR43Q15061 677 aaKnown RBP eCLIP13.73□□□□□ -0.21
USP54-201ENST00000339859 PLEKHG5O94827 1062 aa13.73□□□□□ -0.21
USP54-201ENST00000339859 DCAF11Q8TEB1 546 aa13.72□□□□□ -0.21
USP54-201ENST00000339859 PRXQ9BXM0 1461 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms