RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 BCL11AQ9H165 835 aa11.52□□□□□ -0.57
HPS4-201ENST00000336873 KIF27Q86VH2 1401 aa11.5□□□□□ -0.57
HPS4-201ENST00000336873 MTUS2Q5JR59 1369 aa11.5□□□□□ -0.57
HPS4-201ENST00000336873 CCNB3Q8WWL7 1395 aa11.5□□□□□ -0.57
HPS4-201ENST00000336873 CUX2O14529 1486 aa11.5□□□□□ -0.57
HPS4-201ENST00000336873 SYNJ1O43426 1573 aa11.49□□□□□ -0.57
HPS4-201ENST00000336873 KDM2AQ9Y2K7 1162 aa11.48□□□□□ -0.57
HPS4-201ENST00000336873 NCAPD3P42695 1498 aa11.48□□□□□ -0.57
HPS4-201ENST00000336873 CADPSQ9ULU8 1353 aa11.48□□□□□ -0.57
HPS4-201ENST00000336873 SENP3Q9H4L4 574 aaPredicted RBP11.47□□□□□ -0.57
HPS4-201ENST00000336873 RAB3GAP2Q9H2M9 1393 aa11.47□□□□□ -0.57
HPS4-201ENST00000336873 CARMIL1Q5VZK9 1371 aa11.46□□□□□ -0.57
HPS4-201ENST00000336873 DHX57Q6P158 1386 aaKnown RBP11.45□□□□□ -0.58
HPS4-201ENST00000336873 TDRD9Q8NDG6 1382 aaKnown RBP11.44□□□□□ -0.58
HPS4-201ENST00000336873 SLC4A1APQ9BWU0 796 aaKnown RBP11.42□□□□□ -0.58
HPS4-201ENST00000336873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.4□□□□□ -0.586e-6■□□□□ 8.2
HPS4-201ENST00000336873 MRS2Q9HD23 443 aa11.4□□□□□ -0.58
HPS4-201ENST00000336873 PRKCSHP14314 528 aaPredicted RBP11.4□□□□□ -0.59
HPS4-201ENST00000336873 DNAJC5BQ9UF47 199 aa11.39□□□□□ -0.59
HPS4-201ENST00000336873 FHOD3Q2V2M9 1422 aa11.39□□□□□ -0.59
HPS4-201ENST00000336873 RGL3Q3MIN7 710 aa11.37□□□□□ -0.59
HPS4-201ENST00000336873 KIF21BO75037 1637 aa11.37□□□□□ -0.59
HPS4-201ENST00000336873 CDK11AQ9UQ88 783 aaPredicted RBP11.36□□□□□ -0.59
HPS4-201ENST00000336873 PDS5BQ9NTI5 1447 aa11.35□□□□□ -0.59
HPS4-201ENST00000336873 NPM2Q86SE8 214 aaKnown RBP11.35□□□□□ -0.59
HPS4-201ENST00000336873 ARAP1Q96P48 1450 aa11.34□□□□□ -0.59
HPS4-201ENST00000336873 ERCC6Q03468 1493 aa11.32□□□□□ -0.6
HPS4-201ENST00000336873 FANCD2Q9BXW9 1451 aa11.32□□□□□ -0.6
HPS4-201ENST00000336873 EIF4G2P78344 907 aaKnown RBP eCLIP11.32□□□□□ -0.6
HPS4-201ENST00000336873 CHMP7Q8WUX9 453 aaPredicted RBP11.32□□□□□ -0.6
HPS4-201ENST00000336873 SETD5Q9C0A6 1442 aa11.32□□□□□ -0.6
HPS4-201ENST00000336873 B4GALNT3Q6L9W6 998 aa11.31□□□□□ -0.6
HPS4-201ENST00000336873 PPP1R15AO75807 674 aaPredicted RBP11.31□□□□□ -0.6
HPS4-201ENST00000336873 TSHZ2Q9NRE2 1034 aa11.31□□□□□ -0.6
HPS4-201ENST00000336873 HMGXB3Q12766 1538 aa11.31□□□□□ -0.6
HPS4-201ENST00000336873 CC2D2AQ9P2K1 1620 aa11.31□□□□□ -0.6
HPS4-201ENST00000336873 IGF1RP08069 1367 aa11.3□□□□□ -0.6
HPS4-201ENST00000336873 PHLDB1Q86UU1 1377 aa11.3□□□□□ -0.6
HPS4-201ENST00000336873 HSPA5P11021 654 aaKnown RBP11.29□□□□□ -0.6
HPS4-201ENST00000336873 NBR1Q14596 966 aa11.29□□□□□ -0.6
HPS4-201ENST00000336873 CFTRP13569 1480 aa11.29□□□□□ -0.6
HPS4-201ENST00000336873 RAD54L2Q9Y4B4 1467 aa11.29□□□□□ -0.6
HPS4-201ENST00000336873 PEG3Q9GZU2 1588 aa11.28□□□□□ -0.6
HPS4-201ENST00000336873 CLSPNQ9HAW4 1339 aa11.26□□□□□ -0.61
HPS4-201ENST00000336873 TMC1Q8TDI8 760 aa11.26□□□□□ -0.61
HPS4-201ENST00000336873 L3MBTL2Q969R5 705 aa11.25□□□□□ -0.61
HPS4-201ENST00000336873 CFDP1Q9UEE9 299 aaPredicted RBP11.25□□□□□ -0.61
HPS4-201ENST00000336873 MAPKBP1O60336 1514 aa11.24□□□□□ -0.61
HPS4-201ENST00000336873 NESP48681 1621 aa11.24□□□□□ -0.61
HPS4-201ENST00000336873 ZNF644Q9H582 1327 aaPredicted RBP11.24□□□□□ -0.61
HPS4-201ENST00000336873 RBM19Q9Y4C8 960 aaKnown RBP11.23□□□□□ -0.61
HPS4-201ENST00000336873 FGD5Q6ZNL6 1462 aa11.23□□□□□ -0.61
HPS4-201ENST00000336873 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.61
HPS4-201ENST00000336873 CCDC136Q96JN2 1154 aa11.21□□□□□ -0.61
HPS4-201ENST00000336873 MPHOSPH9Q99550 1183 aa11.21□□□□□ -0.61
HPS4-201ENST00000336873 CHGAP10645 457 aaKnown RBP11.2□□□□□ -0.62
HPS4-201ENST00000336873 CCDC184Q52MB2 194 aa11.2□□□□□ -0.62
HPS4-201ENST00000336873 TSPY4P0CV99 314 aa11.19□□□□□ -0.62
HPS4-201ENST00000336873 TSPY10P0CW01 314 aa11.19□□□□□ -0.62
HPS4-201ENST00000336873 FHAD1B1AJZ9 1412 aa11.19□□□□□ -0.62
HPS4-201ENST00000336873 DCAF11Q8TEB1 546 aa11.17□□□□□ -0.62
HPS4-201ENST00000336873 CARD11Q9BXL7 1154 aa11.17□□□□□ -0.62
HPS4-201ENST00000336873 CUX1P39880 1505 aa11.17□□□□□ -0.62
HPS4-201ENST00000336873 TOP2BQ02880 1626 aa11.16□□□□□ -0.62
HPS4-201ENST00000336873 CC2D1BQ5T0F9 858 aaKnown RBP11.16□□□□□ -0.62
HPS4-201ENST00000336873 BIVM-ERCC5R4GMW8 1640 aa11.16□□□□□ -0.62
HPS4-201ENST00000336873 PKD2Q13563 968 aa11.16□□□□□ -0.62
HPS4-201ENST00000336873 ANP32EQ9BTT0 268 aa11.16□□□□□ -0.62
HPS4-201ENST00000336873 PRXQ9BXM0 1461 aa11.15□□□□□ -0.62
HPS4-201ENST00000336873 PLEKHD1A6NEE1 506 aa11.14□□□□□ -0.63
HPS4-201ENST00000336873 WDR97A6NE52 1622 aa11.13□□□□□ -0.63
HPS4-201ENST00000336873 DAXXQ9UER7 740 aaPredicted RBP11.13□□□□□ -0.63
HPS4-201ENST00000336873 RRBP1Q9P2E9 1410 aaKnown RBP11.12□□□□□ -0.63
HPS4-201ENST00000336873 RTL5Q5HYW3 569 aaPredicted RBP11.11□□□□□ -0.63
HPS4-201ENST00000336873 HNRNPMP52272 730 aaKnown RBP eCLIP11.11□□□□□ -0.63
HPS4-201ENST00000336873 TNNT2P45379 298 aaPredicted RBP11.1□□□□□ -0.63
HPS4-201ENST00000336873 LRRC9Q6ZRR7 1453 aa11.09□□□□□ -0.63
HPS4-201ENST00000336873 SLC24A1O60721 1099 aa11.09□□□□□ -0.63
HPS4-201ENST00000336873 WASHC2AQ641Q2 1341 aa11.09□□□□□ -0.63
HPS4-201ENST00000336873 GAPVD1Q14C86 1478 aa11.08□□□□□ -0.64
HPS4-201ENST00000336873 NEUROD2Q15784 382 aa11.08□□□□□ -0.64
HPS4-201ENST00000336873 TOPBP1Q92547 1522 aa11.08□□□□□ -0.64
HPS4-201ENST00000336873 C11orf95C9JLR9 678 aaPredicted RBP11.08□□□□□ -0.64
HPS4-201ENST00000336873 CCER2I3L3R5 266 aa11.08□□□□□ -0.64
HPS4-201ENST00000336873 PLPPR3Q6T4P5 718 aa11.07□□□□□ -0.64
HPS4-201ENST00000336873 MSH5O43196 834 aa11.07□□□□□ -0.64
HPS4-201ENST00000336873 AQRO60306 1485 aaKnown RBP eCLIP11.07□□□□□ -0.643e-8■■■■□ 23.8
HPS4-201ENST00000336873 POLA1P09884 1462 aaPredicted RBP11.07□□□□□ -0.64
HPS4-201ENST00000336873 ANP32AP39687 249 aaKnown RBP11.06□□□□□ -0.64
HPS4-201ENST00000336873 CCDC18Q5T9S5 1454 aa11.06□□□□□ -0.64
HPS4-201ENST00000336873 NBPF8Q3BBV2 869 aa11.05□□□□□ -0.64
HPS4-201ENST00000336873 ARXQ96QS3 562 aa11.05□□□□□ -0.64
HPS4-201ENST00000336873 PRKRIP1Q9H875 184 aaPredicted RBP11.05□□□□□ -0.64
HPS4-201ENST00000336873 FMN1Q68DA7 1419 aa11.05□□□□□ -0.64
HPS4-201ENST00000336873 ST20-MTHFSA0A0A6YYL1 179 aa11.04□□□□□ -0.64
HPS4-201ENST00000336873 ERICH3Q5RHP9 1530 aa11.04□□□□□ -0.64
HPS4-201ENST00000336873 CANXP27824 592 aaKnown RBP11.03□□□□□ -0.64
HPS4-201ENST00000336873 KDM5BQ9UGL1 1544 aa11.03□□□□□ -0.64
HPS4-201ENST00000336873 PPP4R2Q9NY27 417 aa11.03□□□□□ -0.64
HPS4-201ENST00000336873 TIMELESSQ9UNS1 1208 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms