RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 GAPVD1Q14C86 1478 aa18.9■□□□□ 0.62
LIMK1-201ENST00000336180 FAM50AQ14320 339 aaKnown RBP18.87■□□□□ 0.61
LIMK1-201ENST00000336180 FBLN2P98095 1184 aa18.87■□□□□ 0.61
LIMK1-201ENST00000336180 ERCC6Q03468 1493 aa18.83■□□□□ 0.6
LIMK1-201ENST00000336180 ZNF608Q9ULD9 1512 aaPredicted RBP18.83■□□□□ 0.6
LIMK1-201ENST00000336180 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.6
LIMK1-201ENST00000336180 PCF11O94913 1555 aaKnown RBP18.74■□□□□ 0.59
LIMK1-201ENST00000336180 PHLDB1Q86UU1 1377 aa18.74■□□□□ 0.59
LIMK1-201ENST00000336180 CCNB3Q8WWL7 1395 aa18.73■□□□□ 0.59
LIMK1-201ENST00000336180 ABCA5Q8WWZ7 1642 aa18.72■□□□□ 0.59
LIMK1-201ENST00000336180 WDR97A6NE52 1622 aa18.71■□□□□ 0.59
LIMK1-201ENST00000336180 TARBP1Q13395 1621 aaKnown RBP18.71■□□□□ 0.59
LIMK1-201ENST00000336180 CUL7Q14999 1698 aa18.68■□□□□ 0.58
LIMK1-201ENST00000336180 TIAM1Q13009 1591 aa18.67■□□□□ 0.58
LIMK1-201ENST00000336180 LRRC9Q6ZRR7 1453 aa18.67■□□□□ 0.58
LIMK1-201ENST00000336180 FHAD1B1AJZ9 1412 aa18.67■□□□□ 0.58
LIMK1-201ENST00000336180 CHMP7Q8WUX9 453 aaPredicted RBP18.63■□□□□ 0.57
LIMK1-201ENST00000336180 MTUS2Q5JR59 1369 aa18.62■□□□□ 0.57
LIMK1-201ENST00000336180 RRBP1Q9P2E9 1410 aaKnown RBP18.62■□□□□ 0.57
LIMK1-201ENST00000336180 DIEXFQ68CQ4 756 aaKnown RBP18.61■□□□□ 0.57
LIMK1-201ENST00000336180 CTTNBP2Q8WZ74 1663 aa18.61■□□□□ 0.57
LIMK1-201ENST00000336180 SNAPC4Q5SXM2 1469 aa18.6■□□□□ 0.57
LIMK1-201ENST00000336180 DHX57Q6P158 1386 aaKnown RBP18.59■□□□□ 0.57
LIMK1-201ENST00000336180 GRIN2BQ13224 1484 aa18.59■□□□□ 0.57
LIMK1-201ENST00000336180 CASKIN1Q8WXD9 1431 aa18.57■□□□□ 0.56
LIMK1-201ENST00000336180 NEUROD1Q13562 356 aa18.57■□□□□ 0.56
LIMK1-201ENST00000336180 CHIC2Q9UKJ5 165 aa18.57■□□□□ 0.56
LIMK1-201ENST00000336180 PBRM1Q86U86 1689 aa18.56■□□□□ 0.56
LIMK1-201ENST00000336180 RAB3GAP2Q9H2M9 1393 aa18.56■□□□□ 0.56
LIMK1-201ENST00000336180 FMN1Q68DA7 1419 aa18.55■□□□□ 0.56
LIMK1-201ENST00000336180 IFT140Q96RY7 1462 aa18.55■□□□□ 0.56
LIMK1-201ENST00000336180 EFCAB5A4FU69 1503 aa18.53■□□□□ 0.56
LIMK1-201ENST00000336180 WDR62O43379 1518 aa18.53■□□□□ 0.56
LIMK1-201ENST00000336180 ZNF316A6NFI3 1004 aaPredicted RBP18.53■□□□□ 0.56
LIMK1-201ENST00000336180 FYCO1Q9BQS8 1478 aa18.52■□□□□ 0.56
LIMK1-201ENST00000336180 SIN3AQ96ST3 1273 aa18.52■□□□□ 0.55
LIMK1-201ENST00000336180 ADAMTS12P58397 1594 aa18.51■□□□□ 0.55
LIMK1-201ENST00000336180 PRKCSHP14314 528 aaPredicted RBP18.5■□□□□ 0.55
LIMK1-201ENST00000336180 EIF4G3O43432 1585 aaKnown RBP18.49■□□□□ 0.55
LIMK1-201ENST00000336180 CDK13Q14004 1512 aaKnown RBP18.48■□□□□ 0.55
LIMK1-201ENST00000336180 RRP7BPQ9NSQ0 103 aa18.47■□□□□ 0.55
LIMK1-201ENST00000336180 IQGAP2Q13576 1575 aa18.46■□□□□ 0.55
LIMK1-201ENST00000336180 YTHDC1Q96MU7 727 aaKnown RBP18.45■□□□□ 0.54
LIMK1-201ENST00000336180 SAMD9Q5K651 1589 aa18.44■□□□□ 0.54
LIMK1-201ENST00000336180 CFAP43Q8NDM7 1665 aa18.44■□□□□ 0.54
LIMK1-201ENST00000336180 LRRIQ1Q96JM4 1722 aa18.43■□□□□ 0.54
LIMK1-201ENST00000336180 THOC2Q8NI27 1593 aaKnown RBP18.42■□□□□ 0.54
LIMK1-201ENST00000336180 MAGI3Q5TCQ9 1506 aa18.42■□□□□ 0.54
LIMK1-201ENST00000336180 GRIN2AQ12879 1464 aa18.42■□□□□ 0.54
LIMK1-201ENST00000336180 SETD5Q9C0A6 1442 aa18.41■□□□□ 0.54
LIMK1-201ENST00000336180 NCOA2Q15596 1464 aa18.41■□□□□ 0.54
LIMK1-201ENST00000336180 MAP3K1Q13233 1512 aa18.41■□□□□ 0.54
LIMK1-201ENST00000336180 PTPRKQ15262 1439 aa18.4■□□□□ 0.54
LIMK1-201ENST00000336180 FGD6Q6ZV73 1430 aa18.4■□□□□ 0.54
LIMK1-201ENST00000336180 JPH4Q96JJ6 628 aa18.4■□□□□ 0.54
LIMK1-201ENST00000336180 HIRIP3Q9BW71 556 aaPredicted RBP18.39■□□□□ 0.53
LIMK1-201ENST00000336180 ZNF644Q9H582 1327 aaPredicted RBP18.39■□□□□ 0.53
LIMK1-201ENST00000336180 ZNF777Q9ULD5 760 aaPredicted RBP18.38■□□□□ 0.53
LIMK1-201ENST00000336180 MIER1Q8N108 512 aa18.36■□□□□ 0.53
LIMK1-201ENST00000336180 DISP1Q96F81 1524 aa18.34■□□□□ 0.53
LIMK1-201ENST00000336180 EPRSP07814 1512 aaKnown RBP18.34■□□□□ 0.53
LIMK1-201ENST00000336180 KIAA0586Q9BVV6 1533 aa18.33■□□□□ 0.53
LIMK1-201ENST00000336180 PLB1Q6P1J6 1458 aa18.33■□□□□ 0.52
LIMK1-201ENST00000336180 TRIM52Q96A61 297 aa18.32■□□□□ 0.52
LIMK1-201ENST00000336180 CEP170Q5SW79 1584 aa18.31■□□□□ 0.52
LIMK1-201ENST00000336180 MYOM3Q5VTT5 1437 aa18.3■□□□□ 0.52
LIMK1-201ENST00000336180 FOXD1Q16676 465 aa18.3■□□□□ 0.52
LIMK1-201ENST00000336180 SYNJ2O15056 1496 aa18.29■□□□□ 0.52
LIMK1-201ENST00000336180 PRG4Q92954 1404 aaPredicted RBP18.27■□□□□ 0.52
LIMK1-201ENST00000336180 MAPKBP1O60336 1514 aa18.27■□□□□ 0.52
LIMK1-201ENST00000336180 UGGT2Q9NYU1 1516 aa18.26■□□□□ 0.51
LIMK1-201ENST00000336180 KIAA0556O60303 1618 aa18.26■□□□□ 0.51
LIMK1-201ENST00000336180 MAGI1Q96QZ7 1491 aaPredicted RBP18.25■□□□□ 0.51
LIMK1-201ENST00000336180 NUP153P49790 1475 aaKnown RBP18.24■□□□□ 0.51
LIMK1-201ENST00000336180 HECW1Q76N89 1606 aa18.24■□□□□ 0.51
LIMK1-201ENST00000336180 EHBP1L1Q8N3D4 1523 aa18.23■□□□□ 0.51
LIMK1-201ENST00000336180 SUPT6HQ7KZ85 1726 aaKnown RBP18.22■□□□□ 0.51
LIMK1-201ENST00000336180 CLSPNQ9HAW4 1339 aa18.21■□□□□ 0.51
LIMK1-201ENST00000336180 CCDC18Q5T9S5 1454 aa18.2■□□□□ 0.5
LIMK1-201ENST00000336180 PTPN23Q9H3S7 1636 aa18.19■□□□□ 0.5
LIMK1-201ENST00000336180 CFDP1Q9UEE9 299 aaPredicted RBP18.18■□□□□ 0.5
LIMK1-201ENST00000336180 CDK11AQ9UQ88 783 aaPredicted RBP18.18■□□□□ 0.5
LIMK1-201ENST00000336180 NAIPQ13075 1403 aa18.17■□□□□ 0.5
LIMK1-201ENST00000336180 SCAF1Q9H7N4 1312 aaKnown RBP18.16■□□□□ 0.5
LIMK1-201ENST00000336180 CARMIL2Q6F5E8 1435 aa18.16■□□□□ 0.5
LIMK1-201ENST00000336180 NUP160Q12769 1436 aa18.14■□□□□ 0.49
LIMK1-201ENST00000336180 KCNH8Q96L42 1107 aa18.13■□□□□ 0.49
LIMK1-201ENST00000336180 RAPGEF6Q8TEU7 1601 aa18.13■□□□□ 0.49
LIMK1-201ENST00000336180 PLEKHD1A6NEE1 506 aa18.13■□□□□ 0.49
LIMK1-201ENST00000336180 HFM1A2PYH4 1435 aa18.11■□□□□ 0.49
LIMK1-201ENST00000336180 KDM6BO15054 1643 aa18.11■□□□□ 0.49
LIMK1-201ENST00000336180 DDX10Q13206 875 aaKnown RBP18.09■□□□□ 0.49
LIMK1-201ENST00000336180 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.09■□□□□ 0.49
LIMK1-201ENST00000336180 PTPRGP23470 1445 aa18.09■□□□□ 0.49
LIMK1-201ENST00000336180 ARHGEF11O15085 1522 aa18.08■□□□□ 0.49
LIMK1-201ENST00000336180 TONSLQ96HA7 1378 aa18.08■□□□□ 0.48
LIMK1-201ENST00000336180 KIF14Q15058 1648 aa18.07■□□□□ 0.48
LIMK1-201ENST00000336180 HNRNPMP52272 730 aaKnown RBP eCLIP18.06■□□□□ 0.48
LIMK1-201ENST00000336180 ERCC6L2Q5T890 1561 aa18.05■□□□□ 0.48
LIMK1-201ENST00000336180 ACIN1Q9UKV3 1341 aaKnown RBP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms