RNA–Protein interactions for RNA: ENST00000334859.8

LRCH3-201, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LRCH3, Length 2,258 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-201ENST00000334859 PCF11O94913 1555 aaKnown RBP26.13■■□□□ 1.77
LRCH3-201ENST00000334859 P3H3Q8IVL6 736 aa26.13■■□□□ 1.77
LRCH3-201ENST00000334859 URB2Q14146 1524 aaKnown RBP26.11■■□□□ 1.77
LRCH3-201ENST00000334859 LRRC9Q6ZRR7 1453 aa26.11■■□□□ 1.77
LRCH3-201ENST00000334859 NEUROD1Q13562 356 aa26.09■■□□□ 1.77
LRCH3-201ENST00000334859 CENPBP07199 599 aaPredicted RBP26.09■■□□□ 1.77
LRCH3-201ENST00000334859 CFAP43Q8NDM7 1665 aa26.08■■□□□ 1.77
LRCH3-201ENST00000334859 FHOD3Q2V2M9 1422 aa26.08■■□□□ 1.76
LRCH3-201ENST00000334859 WDR97A6NE52 1622 aa26.07■■□□□ 1.76
LRCH3-201ENST00000334859 CTTNBP2Q8WZ74 1663 aa26.07■■□□□ 1.76
LRCH3-201ENST00000334859 EFCAB5A4FU69 1503 aa26.06■■□□□ 1.76
LRCH3-201ENST00000334859 ATP1B4Q9UN42 357 aaPredicted RBP26.05■■□□□ 1.76
LRCH3-201ENST00000334859 PDS5BQ9NTI5 1447 aa26.01■■□□□ 1.75
LRCH3-201ENST00000334859 PHLDB1Q86UU1 1377 aa26■■□□□ 1.75
LRCH3-201ENST00000334859 FYCO1Q9BQS8 1478 aa26■■□□□ 1.75
LRCH3-201ENST00000334859 ABCA5Q8WWZ7 1642 aa25.97■■□□□ 1.75
LRCH3-201ENST00000334859 TDRD9Q8NDG6 1382 aaKnown RBP25.97■■□□□ 1.75
LRCH3-201ENST00000334859 RAB3GAP2Q9H2M9 1393 aa25.95■■□□□ 1.75
LRCH3-201ENST00000334859 DNAJC5BQ9UF47 199 aa25.95■■□□□ 1.74
LRCH3-201ENST00000334859 KIF21AQ7Z4S6 1674 aa25.94■■□□□ 1.74
LRCH3-201ENST00000334859 CASKIN1Q8WXD9 1431 aa25.94■■□□□ 1.74
LRCH3-201ENST00000334859 MIER1Q8N108 512 aa25.94■■□□□ 1.74
LRCH3-201ENST00000334859 GAPVD1Q14C86 1478 aa25.93■■□□□ 1.74
LRCH3-201ENST00000334859 FAM50AQ14320 339 aaKnown RBP25.93■■□□□ 1.74
LRCH3-201ENST00000334859 AQRO60306 1485 aaKnown RBP eCLIP25.91■■□□□ 1.742e-6■■□□□ 12.8
LRCH3-201ENST00000334859 YTHDC1Q96MU7 727 aaKnown RBP25.89■■□□□ 1.73
LRCH3-201ENST00000334859 FMN1Q68DA7 1419 aa25.88■■□□□ 1.73
LRCH3-201ENST00000334859 SETD5Q9C0A6 1442 aa25.86■■□□□ 1.73
LRCH3-201ENST00000334859 SNAPC4Q5SXM2 1469 aa25.82■■□□□ 1.72
LRCH3-201ENST00000334859 GTF3C3Q9Y5Q9 886 aa25.82■■□□□ 1.72
LRCH3-201ENST00000334859 MAPKBP1O60336 1514 aa25.81■■□□□ 1.72
LRCH3-201ENST00000334859 SAMD9Q5K651 1589 aa25.81■■□□□ 1.72
LRCH3-201ENST00000334859 TARBP1Q13395 1621 aaKnown RBP25.79■■□□□ 1.72
LRCH3-201ENST00000334859 MTUS2Q5JR59 1369 aa25.74■■□□□ 1.71
LRCH3-201ENST00000334859 FGD6Q6ZV73 1430 aa25.7■■□□□ 1.71
LRCH3-201ENST00000334859 LRRIQ1Q96JM4 1722 aa25.7■■□□□ 1.7
LRCH3-201ENST00000334859 PBRM1Q86U86 1689 aa25.69■■□□□ 1.7
LRCH3-201ENST00000334859 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.69■■□□□ 1.7
LRCH3-201ENST00000334859 GRIN2BQ13224 1484 aa25.68■■□□□ 1.7
LRCH3-201ENST00000334859 THOC2Q8NI27 1593 aaKnown RBP25.65■■□□□ 1.7
LRCH3-201ENST00000334859 MRC2Q9UBG0 1479 aa25.63■■□□□ 1.69
LRCH3-201ENST00000334859 NCOA2Q15596 1464 aa25.6■■□□□ 1.69
LRCH3-201ENST00000334859 ADAMTS12P58397 1594 aa25.6■■□□□ 1.69
LRCH3-201ENST00000334859 EHBP1L1Q8N3D4 1523 aa25.59■■□□□ 1.69
LRCH3-201ENST00000334859 SUPT6HQ7KZ85 1726 aaKnown RBP25.58■■□□□ 1.69
LRCH3-201ENST00000334859 SIN3AQ96ST3 1273 aa25.58■■□□□ 1.69
LRCH3-201ENST00000334859 IQGAP2Q13576 1575 aa25.57■■□□□ 1.68
LRCH3-201ENST00000334859 MYOM3Q5VTT5 1437 aa25.56■■□□□ 1.68
LRCH3-201ENST00000334859 CCDC18Q5T9S5 1454 aa25.53■■□□□ 1.68
LRCH3-201ENST00000334859 HECW1Q76N89 1606 aa25.51■■□□□ 1.67
LRCH3-201ENST00000334859 PTPRKQ15262 1439 aa25.5■■□□□ 1.67
LRCH3-201ENST00000334859 PELP1Q8IZL8 1130 aaKnown RBP25.49■■□□□ 1.67
LRCH3-201ENST00000334859 HFM1A2PYH4 1435 aa25.49■■□□□ 1.67
LRCH3-201ENST00000334859 MAGI3Q5TCQ9 1506 aa25.49■■□□□ 1.67
LRCH3-201ENST00000334859 UGGT2Q9NYU1 1516 aa25.48■■□□□ 1.67
LRCH3-201ENST00000334859 PTPN23Q9H3S7 1636 aa25.47■■□□□ 1.67
LRCH3-201ENST00000334859 IFT140Q96RY7 1462 aa25.44■■□□□ 1.66
LRCH3-201ENST00000334859 ZNF608Q9ULD9 1512 aaPredicted RBP25.44■■□□□ 1.66
LRCH3-201ENST00000334859 ARHGEF11O15085 1522 aa25.43■■□□□ 1.66
LRCH3-201ENST00000334859 TIMELESSQ9UNS1 1208 aa25.43■■□□□ 1.66
LRCH3-201ENST00000334859 EPRSP07814 1512 aaKnown RBP25.41■■□□□ 1.66
LRCH3-201ENST00000334859 WDR62O43379 1518 aa25.41■■□□□ 1.66
LRCH3-201ENST00000334859 UACAQ9BZF9 1416 aa25.41■■□□□ 1.66
LRCH3-201ENST00000334859 NAIPQ13075 1403 aa25.4■■□□□ 1.66
LRCH3-201ENST00000334859 CDK13Q14004 1512 aaKnown RBP25.4■■□□□ 1.66
LRCH3-201ENST00000334859 ARID3CA6NKF2 412 aa25.37■■□□□ 1.65
LRCH3-201ENST00000334859 TONSLQ96HA7 1378 aa25.34■■□□□ 1.65
LRCH3-201ENST00000334859 PPP1R15AO75807 674 aaPredicted RBP25.33■■□□□ 1.64
LRCH3-201ENST00000334859 TCOF1Q13428 1488 aaKnown RBP25.32■■□□□ 1.64
LRCH3-201ENST00000334859 EIF4G3O43432 1585 aaKnown RBP25.31■■□□□ 1.64
LRCH3-201ENST00000334859 KIAA0586Q9BVV6 1533 aa25.29■■□□□ 1.64
LRCH3-201ENST00000334859 KIAA0556O60303 1618 aa25.29■■□□□ 1.64
LRCH3-201ENST00000334859 CHIC2Q9UKJ5 165 aa25.29■■□□□ 1.64
LRCH3-201ENST00000334859 RRP7BPQ9NSQ0 103 aa25.28■■□□□ 1.64
LRCH3-201ENST00000334859 ERCC6Q03468 1493 aa25.27■■□□□ 1.64
LRCH3-201ENST00000334859 GCC2Q8IWJ2 1684 aa25.27■■□□□ 1.64
LRCH3-201ENST00000334859 DDX10Q13206 875 aaKnown RBP25.26■■□□□ 1.63
LRCH3-201ENST00000334859 GRIN2AQ12879 1464 aa25.26■■□□□ 1.63
LRCH3-201ENST00000334859 DISP1Q96F81 1524 aa25.26■■□□□ 1.63
LRCH3-201ENST00000334859 MIA2Q96PC5 1412 aa25.24■■□□□ 1.63
LRCH3-201ENST00000334859 HIRIP3Q9BW71 556 aaPredicted RBP25.23■■□□□ 1.63
LRCH3-201ENST00000334859 AKNAQ7Z591 1439 aa25.19■■□□□ 1.62
LRCH3-201ENST00000334859 NUP153P49790 1475 aaKnown RBP25.18■■□□□ 1.62
LRCH3-201ENST00000334859 RAPGEF6Q8TEU7 1601 aa25.17■■□□□ 1.62
LRCH3-201ENST00000334859 TRIM52Q96A61 297 aa25.16■■□□□ 1.62
LRCH3-201ENST00000334859 KCNH8Q96L42 1107 aa25.16■■□□□ 1.62
LRCH3-201ENST00000334859 KDM6BO15054 1643 aa25.16■■□□□ 1.62
LRCH3-201ENST00000334859 MAGI1Q96QZ7 1491 aaPredicted RBP25.14■■□□□ 1.62
LRCH3-201ENST00000334859 CHMP7Q8WUX9 453 aaPredicted RBP25.11■■□□□ 1.61
LRCH3-201ENST00000334859 CEP170Q5SW79 1584 aa25.09■■□□□ 1.61
LRCH3-201ENST00000334859 CDK11AQ9UQ88 783 aaPredicted RBP25.09■■□□□ 1.61
LRCH3-201ENST00000334859 SYNJ2O15056 1496 aa25.09■■□□□ 1.61
LRCH3-201ENST00000334859 DENND4BO75064 1496 aaPredicted RBP25.08■■□□□ 1.61
LRCH3-201ENST00000334859 KDM5BQ9UGL1 1544 aa25.08■■□□□ 1.61
LRCH3-201ENST00000334859 FBLN2P98095 1184 aa25.08■■□□□ 1.61
LRCH3-201ENST00000334859 DAPK1P53355 1430 aa25.08■■□□□ 1.61
LRCH3-201ENST00000334859 DNMT1P26358 1616 aaKnown RBP25.06■■□□□ 1.6
LRCH3-201ENST00000334859 ZNF644Q9H582 1327 aaPredicted RBP25.03■■□□□ 1.6
LRCH3-201ENST00000334859 MPHOSPH9Q99550 1183 aa25.02■■□□□ 1.6
LRCH3-201ENST00000334859 ABCC5O15440 1437 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms