RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CSRNP3Q8WYN3 585 aa26.5■■□□□ 1.83
CCDC28A-201ENST00000332797 PRXQ9BXM0 1461 aa26.49■■□□□ 1.83
CCDC28A-201ENST00000332797 SHROOM2Q13796 1616 aa26.45■■□□□ 1.82
CCDC28A-201ENST00000332797 KIAA0586Q9BVV6 1533 aa26.44■■□□□ 1.82
CCDC28A-201ENST00000332797 JPH4Q96JJ6 628 aa26.37■■□□□ 1.81
CCDC28A-201ENST00000332797 ARAP1Q96P48 1450 aa26.37■■□□□ 1.81
CCDC28A-201ENST00000332797 ERCC6L2Q5T890 1561 aa26.37■■□□□ 1.81
CCDC28A-201ENST00000332797 IQGAP2Q13576 1575 aa26.36■■□□□ 1.81
CCDC28A-201ENST00000332797 PRG4Q92954 1404 aaPredicted RBP26.34■■□□□ 1.81
CCDC28A-201ENST00000332797 CTTNBP2Q8WZ74 1663 aa26.33■■□□□ 1.8
CCDC28A-201ENST00000332797 KIF21BO75037 1637 aa26.3■■□□□ 1.8
CCDC28A-201ENST00000332797 CYB5RLQ6IPT4 315 aa26.3■■□□□ 1.8
CCDC28A-201ENST00000332797 EHMT2Q96KQ7 1210 aa26.19■■□□□ 1.78
CCDC28A-201ENST00000332797 UGGT2Q9NYU1 1516 aa26.19■■□□□ 1.78
CCDC28A-201ENST00000332797 CARMIL2Q6F5E8 1435 aa26.17■■□□□ 1.78
CCDC28A-201ENST00000332797 GOLGA3Q08378 1498 aa26.17■■□□□ 1.78
CCDC28A-201ENST00000332797 DISP1Q96F81 1524 aa26.14■■□□□ 1.78
CCDC28A-201ENST00000332797 KIAA0556O60303 1618 aa26.11■■□□□ 1.77
CCDC28A-201ENST00000332797 UBTFP17480 764 aaKnown RBP26.08■■□□□ 1.77
CCDC28A-201ENST00000332797 TNIKQ9UKE5 1360 aa26.07■■□□□ 1.76
CCDC28A-201ENST00000332797 TTBK1Q5TCY1 1321 aaPredicted RBP26.06■■□□□ 1.76
CCDC28A-201ENST00000332797 PTPRGP23470 1445 aa26.04■■□□□ 1.76
CCDC28A-201ENST00000332797 RANGAP1P46060 587 aaPredicted RBP26.02■■□□□ 1.76
CCDC28A-201ENST00000332797 SAMD9Q5K651 1589 aa25.98■■□□□ 1.75
CCDC28A-201ENST00000332797 P3H3Q8IVL6 736 aa25.94■■□□□ 1.74
CCDC28A-201ENST00000332797 ADCY10Q96PN6 1610 aa25.94■■□□□ 1.74
CCDC28A-201ENST00000332797 EFCAB5A4FU69 1503 aa25.89■■□□□ 1.74
CCDC28A-201ENST00000332797 UACAQ9BZF9 1416 aa25.87■■□□□ 1.73
CCDC28A-201ENST00000332797 FHOD3Q2V2M9 1422 aa25.86■■□□□ 1.73
CCDC28A-201ENST00000332797 ABCC2Q92887 1545 aa25.84■■□□□ 1.73
CCDC28A-201ENST00000332797 UHRF1BP1LA0JNW5 1464 aa25.83■■□□□ 1.73
CCDC28A-201ENST00000332797 PLB1Q6P1J6 1458 aa25.82■■□□□ 1.72
CCDC28A-201ENST00000332797 NPM1P06748 294 aaKnown RBP eCLIP25.81■■□□□ 1.72
CCDC28A-201ENST00000332797 ABCA8O94911 1581 aa25.79■■□□□ 1.72
CCDC28A-201ENST00000332797 ARHGAP35Q9NRY4 1499 aa25.79■■□□□ 1.72
CCDC28A-201ENST00000332797 LOC105371045A0A1W2PR82 267 aa25.73■■□□□ 1.71
CCDC28A-201ENST00000332797 TRHP20396 242 aaPredicted RBP25.73■■□□□ 1.71
CCDC28A-201ENST00000332797 MAPKBP1O60336 1514 aa25.71■■□□□ 1.71
CCDC28A-201ENST00000332797 KDM5BQ9UGL1 1544 aa25.71■■□□□ 1.71
CCDC28A-201ENST00000332797 RAPGEF6Q8TEU7 1601 aa25.7■■□□□ 1.71
CCDC28A-201ENST00000332797 CLIP1P30622 1438 aa25.7■■□□□ 1.7
CCDC28A-201ENST00000332797 ZCCHC11Q5TAX3 1644 aaKnown RBP25.7■■□□□ 1.7
CCDC28A-201ENST00000332797 FMN1Q68DA7 1419 aa25.64■■□□□ 1.69
CCDC28A-201ENST00000332797 CEP162Q5TB80 1403 aa25.63■■□□□ 1.69
CCDC28A-201ENST00000332797 ARID3CA6NKF2 412 aa25.63■■□□□ 1.69
CCDC28A-201ENST00000332797 ASXL2Q76L83 1435 aa25.62■■□□□ 1.69
CCDC28A-201ENST00000332797 NUP153P49790 1475 aaKnown RBP25.6■■□□□ 1.69
CCDC28A-201ENST00000332797 ATP10BO94823 1461 aa25.57■■□□□ 1.68
CCDC28A-201ENST00000332797 ABCC10Q5T3U5 1492 aa25.57■■□□□ 1.68
CCDC28A-201ENST00000332797 KIF13AQ9H1H9 1805 aa25.56■■□□□ 1.68
CCDC28A-201ENST00000332797 DIP2BQ9P265 1576 aa25.56■■□□□ 1.68
CCDC28A-201ENST00000332797 HECW1Q76N89 1606 aa25.54■■□□□ 1.68
CCDC28A-201ENST00000332797 WDR7Q9Y4E6 1490 aa25.52■■□□□ 1.68
CCDC28A-201ENST00000332797 FAM69CQ0P6D2 419 aa25.52■■□□□ 1.68
CCDC28A-201ENST00000332797 ATP1B4Q9UN42 357 aaPredicted RBP25.52■■□□□ 1.68
CCDC28A-201ENST00000332797 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.51■■□□□ 1.67
CCDC28A-201ENST00000332797 HNRNPUL2Q1KMD3 747 aaKnown RBP25.51■■□□□ 1.67
CCDC28A-201ENST00000332797 PCF11O94913 1555 aaKnown RBP25.5■■□□□ 1.67
CCDC28A-201ENST00000332797 EPRSP07814 1512 aaKnown RBP25.47■■□□□ 1.67
CCDC28A-201ENST00000332797 CDK13Q14004 1512 aaKnown RBP25.47■■□□□ 1.67
CCDC28A-201ENST00000332797 CASKIN1Q8WXD9 1431 aa25.46■■□□□ 1.67
CCDC28A-201ENST00000332797 GLI2P10070 1586 aa25.43■■□□□ 1.66
CCDC28A-201ENST00000332797 FYCO1Q9BQS8 1478 aa25.43■■□□□ 1.66
CCDC28A-201ENST00000332797 KCNH8Q96L42 1107 aa25.41■■□□□ 1.66
CCDC28A-201ENST00000332797 LRRIQ1Q96JM4 1722 aa25.41■■□□□ 1.66
CCDC28A-201ENST00000332797 PLEKHD1A6NEE1 506 aa25.36■■□□□ 1.65
CCDC28A-201ENST00000332797 CCDC18Q5T9S5 1454 aa25.36■■□□□ 1.65
CCDC28A-201ENST00000332797 TSPOAP1O95153 1857 aa25.36■■□□□ 1.65
CCDC28A-201ENST00000332797 MAP3K4Q9Y6R4 1608 aa25.34■■□□□ 1.65
CCDC28A-201ENST00000332797 CFAP43Q8NDM7 1665 aa25.3■■□□□ 1.64
CCDC28A-201ENST00000332797 VPS8Q8N3P4 1428 aa25.3■■□□□ 1.64
CCDC28A-201ENST00000332797 CDK11AQ9UQ88 783 aaPredicted RBP25.29■■□□□ 1.64
CCDC28A-201ENST00000332797 PPRC1Q5VV67 1664 aaKnown RBP25.27■■□□□ 1.64
CCDC28A-201ENST00000332797 ABCA9Q8IUA7 1624 aa25.26■■□□□ 1.63
CCDC28A-201ENST00000332797 CD109Q6YHK3 1445 aa25.26■■□□□ 1.63
CCDC28A-201ENST00000332797 TROQ12816 1431 aaPredicted RBP25.23■■□□□ 1.63
CCDC28A-201ENST00000332797 TEX14Q8IWB6 1497 aa25.2■■□□□ 1.63
CCDC28A-201ENST00000332797 MAGI3Q5TCQ9 1506 aa25.2■■□□□ 1.62
CCDC28A-201ENST00000332797 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.2■■□□□ 1.62
CCDC28A-201ENST00000332797 KIF14Q15058 1648 aa25.2■■□□□ 1.62
CCDC28A-201ENST00000332797 TTC37Q6PGP7 1564 aa25.19■■□□□ 1.62
CCDC28A-201ENST00000332797 TIAM1Q13009 1591 aa25.12■■□□□ 1.61
CCDC28A-201ENST00000332797 KDM6BO15054 1643 aa25.11■■□□□ 1.61
CCDC28A-201ENST00000332797 MTUS2Q5JR59 1369 aa25.11■■□□□ 1.61
CCDC28A-201ENST00000332797 EHBP1L1Q8N3D4 1523 aa25.08■■□□□ 1.61
CCDC28A-201ENST00000332797 MYO5CQ9NQX4 1742 aa25.07■■□□□ 1.6
CCDC28A-201ENST00000332797 PLCH2O75038 1416 aa25.04■■□□□ 1.6
CCDC28A-201ENST00000332797 NEO1Q92859 1461 aa25.03■■□□□ 1.6
CCDC28A-201ENST00000332797 MAP3K1Q13233 1512 aa25.03■■□□□ 1.6
CCDC28A-201ENST00000332797 FANCAO15360 1455 aa25.02■■□□□ 1.6
CCDC28A-201ENST00000332797 CFAP74Q9C0B2 1584 aa25.02■■□□□ 1.6
CCDC28A-201ENST00000332797 COL17A1Q9UMD9 1497 aaPredicted RBP25.01■■□□□ 1.59
CCDC28A-201ENST00000332797 APLP2Q06481 763 aa25.01■■□□□ 1.59
CCDC28A-201ENST00000332797 LRRC9Q6ZRR7 1453 aa24.99■■□□□ 1.59
CCDC28A-201ENST00000332797 ARAP3Q8WWN8 1544 aa24.99■■□□□ 1.59
CCDC28A-201ENST00000332797 PHLDB1Q86UU1 1377 aa24.98■■□□□ 1.59
CCDC28A-201ENST00000332797 ARHGAP5Q13017 1502 aa24.98■■□□□ 1.59
CCDC28A-201ENST00000332797 PREX2Q70Z35 1606 aa24.98■■□□□ 1.59
CCDC28A-201ENST00000332797 CDC42BPAQ5VT25 1732 aa24.97■■□□□ 1.59
CCDC28A-201ENST00000332797 SUPT6HQ7KZ85 1726 aaKnown RBP24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms