RNA–Protein interactions for RNA: ENST00000328642.11

SYNM-201, Transcript of synemin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNM, Length 3,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNM-201ENST00000328642 EIF4G1Q04637 1599 aaKnown RBP22.53■■□□□ 1.2
SYNM-201ENST00000328642 KDM2AQ9Y2K7 1162 aa22.53■■□□□ 1.2
SYNM-201ENST00000328642 BICRAQ9NZM4 1560 aa22.52■■□□□ 1.2
SYNM-201ENST00000328642 CCNB3Q8WWL7 1395 aa22.52■■□□□ 1.2
SYNM-201ENST00000328642 ERCC6Q03468 1493 aa22.5■■□□□ 1.19
SYNM-201ENST00000328642 FHOD3Q2V2M9 1422 aa22.48■■□□□ 1.19
SYNM-201ENST00000328642 RAD54L2Q9Y4B4 1467 aa22.47■■□□□ 1.19
SYNM-201ENST00000328642 SYNJ1O43426 1573 aa22.46■■□□□ 1.19
SYNM-201ENST00000328642 FOXD1Q16676 465 aa22.46■■□□□ 1.19
SYNM-201ENST00000328642 NESP48681 1621 aa22.43■■□□□ 1.18
SYNM-201ENST00000328642 FANCD2Q9BXW9 1451 aa22.43■■□□□ 1.18
SYNM-201ENST00000328642 IGF1RP08069 1367 aa22.41■■□□□ 1.18
SYNM-201ENST00000328642 CFDP1Q9UEE9 299 aaPredicted RBP22.4■■□□□ 1.18
SYNM-201ENST00000328642 NCAPD3P42695 1498 aa22.39■■□□□ 1.18
SYNM-201ENST00000328642 TSPY4P0CV99 314 aa22.38■■□□□ 1.17
SYNM-201ENST00000328642 TSPY10P0CW01 314 aa22.38■■□□□ 1.17
SYNM-201ENST00000328642 PLEKHD1A6NEE1 506 aa22.37■■□□□ 1.17
SYNM-201ENST00000328642 FAM9BQ8IZU0 186 aa22.36■■□□□ 1.17
SYNM-201ENST00000328642 RGL3Q3MIN7 710 aa22.35■■□□□ 1.17
SYNM-201ENST00000328642 SALL2Q9Y467 1007 aaPredicted RBP22.35■■□□□ 1.17
SYNM-201ENST00000328642 PDS5BQ9NTI5 1447 aa22.34■■□□□ 1.17
SYNM-201ENST00000328642 FGD5Q6ZNL6 1462 aa22.34■■□□□ 1.17
SYNM-201ENST00000328642 CHGAP10645 457 aaKnown RBP22.34■■□□□ 1.17
SYNM-201ENST00000328642 HNRNPUQ00839 825 aaKnown RBP eCLIP22.29■■□□□ 1.16
SYNM-201ENST00000328642 RAB3GAP2Q9H2M9 1393 aa22.29■■□□□ 1.16
SYNM-201ENST00000328642 ERICH6Q7L0X2 663 aa22.28■■□□□ 1.16
SYNM-201ENST00000328642 FHAD1B1AJZ9 1412 aa22.28■■□□□ 1.16
SYNM-201ENST00000328642 UNC13AQ9UPW8 1703 aa22.27■■□□□ 1.16
SYNM-201ENST00000328642 PLPPR3Q6T4P5 718 aa22.27■■□□□ 1.16
SYNM-201ENST00000328642 IRX6P78412 446 aaPredicted RBP22.24■■□□□ 1.15
SYNM-201ENST00000328642 FKBP8Q14318 412 aa22.23■■□□□ 1.15
SYNM-201ENST00000328642 CFTRP13569 1480 aa22.18■■□□□ 1.14
SYNM-201ENST00000328642 CUX1P39880 1505 aa22.16■■□□□ 1.14
SYNM-201ENST00000328642 ARAP1Q96P48 1450 aa22.16■■□□□ 1.14
SYNM-201ENST00000328642 AQRO60306 1485 aaKnown RBP eCLIP22.16■■□□□ 1.14
SYNM-201ENST00000328642 KIF21BO75037 1637 aa22.15■■□□□ 1.14
SYNM-201ENST00000328642 SETD5Q9C0A6 1442 aa22.15■■□□□ 1.14
SYNM-201ENST00000328642 NPM1P06748 294 aaKnown RBP eCLIP22.14■■□□□ 1.14
SYNM-201ENST00000328642 EIF4G2P78344 907 aaKnown RBP eCLIP22.14■■□□□ 1.13
SYNM-201ENST00000328642 CC2D2AQ9P2K1 1620 aa22.13■■□□□ 1.13
SYNM-201ENST00000328642 ARHGAP35Q9NRY4 1499 aa22.11■■□□□ 1.13
SYNM-201ENST00000328642 DHX57Q6P158 1386 aaKnown RBP22.09■■□□□ 1.13
SYNM-201ENST00000328642 MRS2Q9HD23 443 aa22.09■■□□□ 1.13
SYNM-201ENST00000328642 JPH4Q96JJ6 628 aa22.09■■□□□ 1.13
SYNM-201ENST00000328642 ZNF644Q9H582 1327 aaPredicted RBP22.05■■□□□ 1.12
SYNM-201ENST00000328642 PHLDB1Q86UU1 1377 aa22.04■■□□□ 1.12
SYNM-201ENST00000328642 FMN1Q68DA7 1419 aa22.03■■□□□ 1.12
SYNM-201ENST00000328642 GAPVD1Q14C86 1478 aa22.02■■□□□ 1.12
SYNM-201ENST00000328642 HNRNPMP52272 730 aaKnown RBP eCLIP22.01■■□□□ 1.11
SYNM-201ENST00000328642 PRXQ9BXM0 1461 aa22■■□□□ 1.11
SYNM-201ENST00000328642 MPHOSPH9Q99550 1183 aa21.98■■□□□ 1.11
SYNM-201ENST00000328642 CLSPNQ9HAW4 1339 aa21.98■■□□□ 1.11
SYNM-201ENST00000328642 PKD2Q13563 968 aa21.97■■□□□ 1.11
SYNM-201ENST00000328642 TOP2BQ02880 1626 aa21.97■■□□□ 1.11
SYNM-201ENST00000328642 TMC1Q8TDI8 760 aa21.96■■□□□ 1.11
SYNM-201ENST00000328642 DCAF11Q8TEB1 546 aa21.95■■□□□ 1.1
SYNM-201ENST00000328642 BCL11AQ9H165 835 aa21.94■■□□□ 1.1
SYNM-201ENST00000328642 PPP1R15AO75807 674 aaPredicted RBP21.94■■□□□ 1.1
SYNM-201ENST00000328642 CARD11Q9BXL7 1154 aa21.93■■□□□ 1.1
SYNM-201ENST00000328642 POLA1P09884 1462 aaPredicted RBP21.93■■□□□ 1.1
SYNM-201ENST00000328642 HSPA5P11021 654 aaKnown RBP21.92■■□□□ 1.1
SYNM-201ENST00000328642 L3MBTL2Q969R5 705 aa21.92■■□□□ 1.1
SYNM-201ENST00000328642 HMGXB3Q12766 1538 aa21.89■■□□□ 1.1
SYNM-201ENST00000328642 TOPBP1Q92547 1522 aa21.88■■□□□ 1.09
SYNM-201ENST00000328642 STAG3Q9UJ98 1225 aa21.87■■□□□ 1.09
SYNM-201ENST00000328642 SUPT16HQ9Y5B9 1047 aaKnown RBP21.83■■□□□ 1.08
SYNM-201ENST00000328642 NUP155O75694 1391 aa21.8■■□□□ 1.08
SYNM-201ENST00000328642 CARMIL2Q6F5E8 1435 aa21.79■■□□□ 1.08
SYNM-201ENST00000328642 LRRC9Q6ZRR7 1453 aa21.79■■□□□ 1.08
SYNM-201ENST00000328642 PEG3Q9GZU2 1588 aa21.77■■□□□ 1.08
SYNM-201ENST00000328642 GGT6Q6P531 493 aa21.74■■□□□ 1.07
SYNM-201ENST00000328642 CC2D1BQ5T0F9 858 aaKnown RBP21.73■■□□□ 1.07
SYNM-201ENST00000328642 ERICH3Q5RHP9 1530 aa21.73■■□□□ 1.07
SYNM-201ENST00000328642 ESF1Q9H501 851 aaKnown RBP21.72■■□□□ 1.07
SYNM-201ENST00000328642 FGD6Q6ZV73 1430 aa21.7■■□□□ 1.06
SYNM-201ENST00000328642 MLECQ14165 292 aa21.7■■□□□ 1.06
SYNM-201ENST00000328642 PLEKHG5O94827 1062 aa21.69■■□□□ 1.06
SYNM-201ENST00000328642 TNNT2P45379 298 aaPredicted RBP21.69■■□□□ 1.06
SYNM-201ENST00000328642 SAFB2Q14151 953 aaKnown RBP eCLIP21.66■■□□□ 1.06
SYNM-201ENST00000328642 CCDC18Q5T9S5 1454 aa21.65■■□□□ 1.06
SYNM-201ENST00000328642 NPM2Q86SE8 214 aaKnown RBP21.65■■□□□ 1.06
SYNM-201ENST00000328642 NUTM2DQ5VT03 806 aaPredicted RBP21.64■■□□□ 1.06
SYNM-201ENST00000328642 PTPRGP23470 1445 aa21.64■■□□□ 1.06
SYNM-201ENST00000328642 TIMELESSQ9UNS1 1208 aa21.64■■□□□ 1.05
SYNM-201ENST00000328642 SLC24A1O60721 1099 aa21.64■■□□□ 1.05
SYNM-201ENST00000328642 CANXP27824 592 aaKnown RBP21.62■■□□□ 1.05
SYNM-201ENST00000328642 NCOA2Q15596 1464 aa21.62■■□□□ 1.05
SYNM-201ENST00000328642 CASKIN1Q8WXD9 1431 aa21.61■■□□□ 1.05
SYNM-201ENST00000328642 KIF3BO15066 747 aa21.61■■□□□ 1.05
SYNM-201ENST00000328642 MYT1Q01538 1121 aa21.61■■□□□ 1.05
SYNM-201ENST00000328642 URB2Q14146 1524 aaKnown RBP21.6■■□□□ 1.05
SYNM-201ENST00000328642 RRBP1Q9P2E9 1410 aaKnown RBP21.59■■□□□ 1.05
SYNM-201ENST00000328642 EFCAB2Q5VUJ9 269 aa21.59■■□□□ 1.05
SYNM-201ENST00000328642 DAXXQ9UER7 740 aaPredicted RBP21.59■■□□□ 1.05
SYNM-201ENST00000328642 ANKRD30AQ9BXX3 1397 aa21.58■■□□□ 1.05
SYNM-201ENST00000328642 MYOM3Q5VTT5 1437 aa21.58■■□□□ 1.05
SYNM-201ENST00000328642 NEUROD2Q15784 382 aa21.58■■□□□ 1.05
SYNM-201ENST00000328642 PRDM2Q13029 1718 aa21.56■■□□□ 1.04
SYNM-201ENST00000328642 CCDC136Q96JN2 1154 aa21.56■■□□□ 1.04
SYNM-201ENST00000328642 GRIN2BQ13224 1484 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms