RNA–Protein interactions for RNA: ENST00000321728.11

PRKCB-202, Transcript of protein kinase C beta, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRKCB, Length 2,689 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-202ENST00000321728 TRIM52Q96A61 297 aa25.3■■□□□ 1.64
PRKCB-202ENST00000321728 SETD5Q9C0A6 1442 aa25.28■■□□□ 1.64
PRKCB-202ENST00000321728 PPP1R15AO75807 674 aaPredicted RBP25.27■■□□□ 1.64
PRKCB-202ENST00000321728 P3H3Q8IVL6 736 aa25.26■■□□□ 1.63
PRKCB-202ENST00000321728 HIRIP3Q9BW71 556 aaPredicted RBP25.26■■□□□ 1.63
PRKCB-202ENST00000321728 ATP1B4Q9UN42 357 aaPredicted RBP25.26■■□□□ 1.63
PRKCB-202ENST00000321728 ANP32CO43423 234 aa25.23■■□□□ 1.63
PRKCB-202ENST00000321728 CCER2I3L3R5 266 aa25.2■■□□□ 1.62
PRKCB-202ENST00000321728 FAM50AQ14320 339 aaKnown RBP25.2■■□□□ 1.62
PRKCB-202ENST00000321728 TIAM1Q13009 1591 aa25.14■■□□□ 1.62
PRKCB-202ENST00000321728 NCAPD3P42695 1498 aa25.14■■□□□ 1.61
PRKCB-202ENST00000321728 TIMELESSQ9UNS1 1208 aa25.12■■□□□ 1.61
PRKCB-202ENST00000321728 PHLDB1Q86UU1 1377 aa25.1■■□□□ 1.61
PRKCB-202ENST00000321728 CFTRP13569 1480 aa25.1■■□□□ 1.61
PRKCB-202ENST00000321728 HMGXB3Q12766 1538 aa25.08■■□□□ 1.61
PRKCB-202ENST00000321728 LRRC9Q6ZRR7 1453 aa25.08■■□□□ 1.61
PRKCB-202ENST00000321728 IGF1RP08069 1367 aa25.06■■□□□ 1.6
PRKCB-202ENST00000321728 MAP3K1Q13233 1512 aa25.06■■□□□ 1.6
PRKCB-202ENST00000321728 MSH5O43196 834 aa25.05■■□□□ 1.6
PRKCB-202ENST00000321728 CARMIL1Q5VZK9 1371 aa24.99■■□□□ 1.59
PRKCB-202ENST00000321728 CDK11AQ9UQ88 783 aaPredicted RBP24.96■■□□□ 1.59
PRKCB-202ENST00000321728 IRX6P78412 446 aaPredicted RBP24.96■■□□□ 1.59
PRKCB-202ENST00000321728 ERICH6Q7L0X2 663 aa24.95■■□□□ 1.58
PRKCB-202ENST00000321728 TONSLQ96HA7 1378 aa24.95■■□□□ 1.58
PRKCB-202ENST00000321728 FGD5Q6ZNL6 1462 aa24.94■■□□□ 1.58
PRKCB-202ENST00000321728 HNRNPUQ00839 825 aaKnown RBP eCLIP24.94■■□□□ 1.589e-7■□□□□ 11
PRKCB-202ENST00000321728 FANCIQ9NVI1 1328 aa24.92■■□□□ 1.58
PRKCB-202ENST00000321728 FHAD1B1AJZ9 1412 aa24.9■■□□□ 1.58
PRKCB-202ENST00000321728 FHOD3Q2V2M9 1422 aa24.88■■□□□ 1.57
PRKCB-202ENST00000321728 CFAP43Q8NDM7 1665 aa24.84■■□□□ 1.57
PRKCB-202ENST00000321728 PCF11O94913 1555 aaKnown RBP24.84■■□□□ 1.57
PRKCB-202ENST00000321728 CADPSQ9ULU8 1353 aa24.83■■□□□ 1.57
PRKCB-202ENST00000321728 RAD54L2Q9Y4B4 1467 aa24.81■■□□□ 1.56
PRKCB-202ENST00000321728 CCDC18Q5T9S5 1454 aa24.75■■□□□ 1.55
PRKCB-202ENST00000321728 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.75■■□□□ 1.557e-7■■■■■ 52.8
PRKCB-202ENST00000321728 PRDM2Q13029 1718 aa24.73■■□□□ 1.55
PRKCB-202ENST00000321728 PPP4R2Q9NY27 417 aa24.71■■□□□ 1.55
PRKCB-202ENST00000321728 UACAQ9BZF9 1416 aa24.7■■□□□ 1.54
PRKCB-202ENST00000321728 ERICH6BQ5W0A0 696 aa24.69■■□□□ 1.54
PRKCB-202ENST00000321728 FGD6Q6ZV73 1430 aa24.68■■□□□ 1.54
PRKCB-202ENST00000321728 FYCO1Q9BQS8 1478 aa24.68■■□□□ 1.54
PRKCB-202ENST00000321728 FANCD2Q9BXW9 1451 aa24.67■■□□□ 1.54
PRKCB-202ENST00000321728 WASHC2AQ641Q2 1341 aa24.65■■□□□ 1.54
PRKCB-202ENST00000321728 NESP48681 1621 aa24.64■■□□□ 1.54
PRKCB-202ENST00000321728 HFM1A2PYH4 1435 aa24.64■■□□□ 1.53
PRKCB-202ENST00000321728 CASKIN1Q8WXD9 1431 aa24.64■■□□□ 1.53
PRKCB-202ENST00000321728 HSPA5P11021 654 aaKnown RBP24.63■■□□□ 1.53
PRKCB-202ENST00000321728 PTPRKQ15262 1439 aa24.62■■□□□ 1.53
PRKCB-202ENST00000321728 B4GALNT3Q6L9W6 998 aa24.6■■□□□ 1.53
PRKCB-202ENST00000321728 MYT1LQ9UL68 1186 aa24.6■■□□□ 1.53
PRKCB-202ENST00000321728 PTPN23Q9H3S7 1636 aa24.6■■□□□ 1.53
PRKCB-202ENST00000321728 CCDC184Q52MB2 194 aa24.59■■□□□ 1.53
PRKCB-202ENST00000321728 MTUS2Q5JR59 1369 aa24.58■■□□□ 1.53
PRKCB-202ENST00000321728 FAM9BQ8IZU0 186 aa24.58■■□□□ 1.52
PRKCB-202ENST00000321728 ARID3CA6NKF2 412 aa24.57■■□□□ 1.52
PRKCB-202ENST00000321728 POLA1P09884 1462 aaPredicted RBP24.56■■□□□ 1.52
PRKCB-202ENST00000321728 CC2D2AQ9P2K1 1620 aa24.56■■□□□ 1.52
PRKCB-202ENST00000321728 KDM5BQ9UGL1 1544 aa24.56■■□□□ 1.52
PRKCB-202ENST00000321728 AQRO60306 1485 aaKnown RBP eCLIP24.55■■□□□ 1.521e-6■■■■■ 28
PRKCB-202ENST00000321728 NAIPQ13075 1403 aa24.55■■□□□ 1.52
PRKCB-202ENST00000321728 DEKP35659 375 aaKnown RBP24.55■■□□□ 1.52
PRKCB-202ENST00000321728 CHIC2Q9UKJ5 165 aa24.55■■□□□ 1.52
PRKCB-202ENST00000321728 EIF4G2P78344 907 aaKnown RBP eCLIP24.54■■□□□ 1.522e-7■■■■□ 19.3
PRKCB-202ENST00000321728 EFCAB5A4FU69 1503 aa24.54■■□□□ 1.52
PRKCB-202ENST00000321728 TDRD9Q8NDG6 1382 aaKnown RBP24.53■■□□□ 1.52
PRKCB-202ENST00000321728 TOPBP1Q92547 1522 aa24.51■■□□□ 1.51
PRKCB-202ENST00000321728 MRS2Q9HD23 443 aa24.5■■□□□ 1.51
PRKCB-202ENST00000321728 RRP7BPQ9NSQ0 103 aa24.5■■□□□ 1.51
PRKCB-202ENST00000321728 CNTLNQ9NXG0 1405 aa24.5■■□□□ 1.51
PRKCB-202ENST00000321728 FMN1Q68DA7 1419 aa24.5■■□□□ 1.51
PRKCB-202ENST00000321728 PRKRIP1Q9H875 184 aaPredicted RBP24.47■■□□□ 1.51
PRKCB-202ENST00000321728 ZBED9Q6R2W3 1325 aa24.46■■□□□ 1.51
PRKCB-202ENST00000321728 NCOA2Q15596 1464 aa24.46■■□□□ 1.51
PRKCB-202ENST00000321728 ABCA10Q8WWZ4 1543 aa24.46■■□□□ 1.51
PRKCB-202ENST00000321728 NOP58Q9Y2X3 529 aaKnown RBP24.45■■□□□ 1.5
PRKCB-202ENST00000321728 DNMBPQ6XZF7 1577 aa24.45■■□□□ 1.5
PRKCB-202ENST00000321728 MYOM3Q5VTT5 1437 aa24.44■■□□□ 1.5
PRKCB-202ENST00000321728 NBR1Q14596 966 aa24.43■■□□□ 1.5
PRKCB-202ENST00000321728 C11orf95C9JLR9 678 aaPredicted RBP24.41■■□□□ 1.5
PRKCB-202ENST00000321728 SNAPC4Q5SXM2 1469 aa24.41■■□□□ 1.5
PRKCB-202ENST00000321728 CTTNBP2Q8WZ74 1663 aa24.41■■□□□ 1.5
PRKCB-202ENST00000321728 FOXD1Q16676 465 aa24.39■■□□□ 1.49
PRKCB-202ENST00000321728 CCDC7Q96M83 1385 aa24.39■■□□□ 1.49
PRKCB-202ENST00000321728 LRRIQ1Q96JM4 1722 aa24.38■■□□□ 1.49
PRKCB-202ENST00000321728 DNAJC5BQ9UF47 199 aa24.37■■□□□ 1.49
PRKCB-202ENST00000321728 PAK3O75914 559 aaPredicted RBP24.37■■□□□ 1.49
PRKCB-202ENST00000321728 L3MBTL2Q969R5 705 aa24.37■■□□□ 1.49
PRKCB-202ENST00000321728 NCOA1Q15788 1441 aa24.34■■□□□ 1.49
PRKCB-202ENST00000321728 URB2Q14146 1524 aaKnown RBP24.32■■□□□ 1.48
PRKCB-202ENST00000321728 CUL7Q14999 1698 aa24.32■■□□□ 1.48
PRKCB-202ENST00000321728 SUPT6HQ7KZ85 1726 aaKnown RBP24.32■■□□□ 1.48
PRKCB-202ENST00000321728 CNGB1Q14028 1251 aaPredicted RBP24.31■■□□□ 1.48
PRKCB-202ENST00000321728 DENND4BO75064 1496 aaPredicted RBP24.31■■□□□ 1.48
PRKCB-202ENST00000321728 MPHOSPH9Q99550 1183 aa24.3■■□□□ 1.48
PRKCB-202ENST00000321728 HECW1Q76N89 1606 aa24.28■■□□□ 1.48
PRKCB-202ENST00000321728 ANP32AP39687 249 aaKnown RBP24.28■■□□□ 1.48
PRKCB-202ENST00000321728 CCDC136Q96JN2 1154 aa24.27■■□□□ 1.48
PRKCB-202ENST00000321728 AKNAQ7Z591 1439 aa24.27■■□□□ 1.48
PRKCB-202ENST00000321728 MAGI3Q5TCQ9 1506 aa24.25■■□□□ 1.47
PRKCB-202ENST00000321728 EHBP1L1Q8N3D4 1523 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms