RNA–Protein interactions for RNA: ENST00000319980.10

IFT88-201, Transcript of intraflagellar transport 88, humanhuman

TSL 1 (best) BASIC

Gene IFT88, Length 3,091 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-201ENST00000319980 ARHGAP35Q9NRY4 1499 aa11.51□□□□□ -0.57
IFT88-201ENST00000319980 HNRNPUL2Q1KMD3 747 aaKnown RBP11.49□□□□□ -0.57
IFT88-201ENST00000319980 TDRD9Q8NDG6 1382 aaKnown RBP11.49□□□□□ -0.57
IFT88-201ENST00000319980 KANK4Q5T7N3 995 aaPredicted RBP11.49□□□□□ -0.57
IFT88-201ENST00000319980 P3H3Q8IVL6 736 aa11.45□□□□□ -0.58
IFT88-201ENST00000319980 ZNF608Q9ULD9 1512 aaPredicted RBP11.44□□□□□ -0.58
IFT88-201ENST00000319980 CHD1O14646 1710 aa11.42□□□□□ -0.58
IFT88-201ENST00000319980 GAPVD1Q14C86 1478 aa11.42□□□□□ -0.58
IFT88-201ENST00000319980 ATP1B4Q9UN42 357 aaPredicted RBP11.39□□□□□ -0.59
IFT88-201ENST00000319980 ABCA5Q8WWZ7 1642 aa11.39□□□□□ -0.59
IFT88-201ENST00000319980 RIMBP3CA6NJZ7 1639 aa11.38□□□□□ -0.59
IFT88-201ENST00000319980 RIMBP3BA6NNM3 1639 aa11.38□□□□□ -0.59
IFT88-201ENST00000319980 RIMBP3Q9UFD9 1639 aa11.38□□□□□ -0.59
IFT88-201ENST00000319980 MAGI1Q96QZ7 1491 aaPredicted RBP11.38□□□□□ -0.59
IFT88-201ENST00000319980 PBRM1Q86U86 1689 aa11.38□□□□□ -0.59
IFT88-201ENST00000319980 CUL7Q14999 1698 aa11.38□□□□□ -0.59
IFT88-201ENST00000319980 CLASP1Q7Z460 1538 aa11.37□□□□□ -0.59
IFT88-201ENST00000319980 OSCARQ8IYS5 282 aa11.37□□□□□ -0.59
IFT88-201ENST00000319980 FHAD1B1AJZ9 1412 aa11.36□□□□□ -0.59
IFT88-201ENST00000319980 FHOD3Q2V2M9 1422 aa11.36□□□□□ -0.59
IFT88-201ENST00000319980 AQRO60306 1485 aaKnown RBP eCLIP11.35□□□□□ -0.59
IFT88-201ENST00000319980 GRIN2BQ13224 1484 aa11.32□□□□□ -0.6
IFT88-201ENST00000319980 ARHGEF11O15085 1522 aa11.32□□□□□ -0.6
IFT88-201ENST00000319980 RRBP1Q9P2E9 1410 aaKnown RBP11.31□□□□□ -0.6
IFT88-201ENST00000319980 CCNB3Q8WWL7 1395 aa11.31□□□□□ -0.6
IFT88-201ENST00000319980 ITGAEP38570 1179 aa11.31□□□□□ -0.6
IFT88-201ENST00000319980 TIAM1Q13009 1591 aa11.3□□□□□ -0.6
IFT88-201ENST00000319980 EFCAB5A4FU69 1503 aa11.3□□□□□ -0.6
IFT88-201ENST00000319980 MAP3K1Q13233 1512 aa11.29□□□□□ -0.6
IFT88-201ENST00000319980 SYNJ2O15056 1496 aa11.29□□□□□ -0.6
IFT88-201ENST00000319980 LRRC9Q6ZRR7 1453 aa11.29□□□□□ -0.6
IFT88-201ENST00000319980 PCF11O94913 1555 aaKnown RBP11.28□□□□□ -0.6
IFT88-201ENST00000319980 FMN1Q68DA7 1419 aa11.28□□□□□ -0.6
IFT88-201ENST00000319980 CTTNBP2Q8WZ74 1663 aa11.27□□□□□ -0.6
IFT88-201ENST00000319980 CASKIN1Q8WXD9 1431 aa11.27□□□□□ -0.61
IFT88-201ENST00000319980 SNAPC4Q5SXM2 1469 aa11.27□□□□□ -0.61
IFT88-201ENST00000319980 ADAMTS12P58397 1594 aa11.26□□□□□ -0.61
IFT88-201ENST00000319980 FYCO1Q9BQS8 1478 aa11.26□□□□□ -0.61
IFT88-201ENST00000319980 PHLDB1Q86UU1 1377 aa11.26□□□□□ -0.61
IFT88-201ENST00000319980 SHROOM2Q13796 1616 aa11.25□□□□□ -0.61
IFT88-201ENST00000319980 FAM50AQ14320 339 aaKnown RBP11.24□□□□□ -0.61
IFT88-201ENST00000319980 SAMD9Q5K651 1589 aa11.21□□□□□ -0.61
IFT88-201ENST00000319980 PLPPR3Q6T4P5 718 aa11.21□□□□□ -0.62
IFT88-201ENST00000319980 DHX57Q6P158 1386 aaKnown RBP11.2□□□□□ -0.62
IFT88-201ENST00000319980 NUP160Q12769 1436 aa11.2□□□□□ -0.62
IFT88-201ENST00000319980 MTUS2Q5JR59 1369 aa11.2□□□□□ -0.62
IFT88-201ENST00000319980 CFAP43Q8NDM7 1665 aa11.19□□□□□ -0.62
IFT88-201ENST00000319980 FBLN2P98095 1184 aa11.18□□□□□ -0.62
IFT88-201ENST00000319980 CHMP7Q8WUX9 453 aaPredicted RBP11.17□□□□□ -0.62
IFT88-201ENST00000319980 IQGAP2Q13576 1575 aa11.17□□□□□ -0.62
IFT88-201ENST00000319980 GRIN2AQ12879 1464 aa11.17□□□□□ -0.62
IFT88-201ENST00000319980 CLSPNQ9HAW4 1339 aa11.17□□□□□ -0.62
IFT88-201ENST00000319980 DIEXFQ68CQ4 756 aaKnown RBP11.16□□□□□ -0.62
IFT88-201ENST00000319980 RAB3GAP2Q9H2M9 1393 aa11.15□□□□□ -0.62
IFT88-201ENST00000319980 ARID3CA6NKF2 412 aa11.15□□□□□ -0.62
IFT88-201ENST00000319980 CEP170Q5SW79 1584 aa11.15□□□□□ -0.62
IFT88-201ENST00000319980 ZNF316A6NFI3 1004 aaPredicted RBP11.15□□□□□ -0.62
IFT88-201ENST00000319980 KIAA0586Q9BVV6 1533 aa11.14□□□□□ -0.63
IFT88-201ENST00000319980 SETD5Q9C0A6 1442 aa11.13□□□□□ -0.63
IFT88-201ENST00000319980 FGD6Q6ZV73 1430 aa11.12□□□□□ -0.63
IFT88-201ENST00000319980 UGGT2Q9NYU1 1516 aa11.11□□□□□ -0.63
IFT88-201ENST00000319980 NCOA2Q15596 1464 aa11.1□□□□□ -0.63
IFT88-201ENST00000319980 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.1□□□□□ -0.63
IFT88-201ENST00000319980 CCDC18Q5T9S5 1454 aa11.09□□□□□ -0.63
IFT88-201ENST00000319980 RTN4Q9NQC3 1192 aaKnown RBP11.08□□□□□ -0.64
IFT88-201ENST00000319980 EPRSP07814 1512 aaKnown RBP11.08□□□□□ -0.64
IFT88-201ENST00000319980 DISP1Q96F81 1524 aa11.08□□□□□ -0.64
IFT88-201ENST00000319980 LRRIQ1Q96JM4 1722 aa11.08□□□□□ -0.64
IFT88-201ENST00000319980 MYOM3Q5VTT5 1437 aa11.08□□□□□ -0.64
IFT88-201ENST00000319980 MAGI3Q5TCQ9 1506 aa11.07□□□□□ -0.64
IFT88-201ENST00000319980 EHBP1L1Q8N3D4 1523 aa11.07□□□□□ -0.64
IFT88-201ENST00000319980 JPH4Q96JJ6 628 aa11.07□□□□□ -0.64
IFT88-201ENST00000319980 CDK13Q14004 1512 aaKnown RBP11.07□□□□□ -0.64
IFT88-201ENST00000319980 HECW1Q76N89 1606 aa11.06□□□□□ -0.64
IFT88-201ENST00000319980 KIAA0556O60303 1618 aa11.04□□□□□ -0.64
IFT88-201ENST00000319980 PTPRKQ15262 1439 aa11.04□□□□□ -0.64
IFT88-201ENST00000319980 SUPT6HQ7KZ85 1726 aaKnown RBP11.04□□□□□ -0.64
IFT88-201ENST00000319980 MAPKBP1O60336 1514 aa11.02□□□□□ -0.65
IFT88-201ENST00000319980 NEUROD1Q13562 356 aa11.02□□□□□ -0.65
IFT88-201ENST00000319980 SIN3AQ96ST3 1273 aa11.02□□□□□ -0.65
IFT88-201ENST00000319980 CDK11AQ9UQ88 783 aaPredicted RBP11.02□□□□□ -0.65
IFT88-201ENST00000319980 KCNA4P22459 653 aa11.01□□□□□ -0.65
IFT88-201ENST00000319980 CHIC2Q9UKJ5 165 aa11.01□□□□□ -0.65
IFT88-201ENST00000319980 NUP153P49790 1475 aaKnown RBP11.01□□□□□ -0.65
IFT88-201ENST00000319980 CARMIL2Q6F5E8 1435 aa11.01□□□□□ -0.65
IFT88-201ENST00000319980 ERCC6L2Q5T890 1561 aa11□□□□□ -0.65
IFT88-201ENST00000319980 PLB1Q6P1J6 1458 aa10.99□□□□□ -0.65
IFT88-201ENST00000319980 HFM1A2PYH4 1435 aa10.99□□□□□ -0.65
IFT88-201ENST00000319980 RRP7BPQ9NSQ0 103 aa10.99□□□□□ -0.65
IFT88-201ENST00000319980 PTPN23Q9H3S7 1636 aa10.98□□□□□ -0.65
IFT88-201ENST00000319980 NAIPQ13075 1403 aa10.97□□□□□ -0.65
IFT88-201ENST00000319980 RAPGEF6Q8TEU7 1601 aa10.97□□□□□ -0.65
IFT88-201ENST00000319980 MIA2Q96PC5 1412 aa10.97□□□□□ -0.65
IFT88-201ENST00000319980 KIF13AQ9H1H9 1805 aa10.96□□□□□ -0.66
IFT88-201ENST00000319980 PRG4Q92954 1404 aaPredicted RBP10.96□□□□□ -0.66
IFT88-201ENST00000319980 TCOF1Q13428 1488 aaKnown RBP10.95□□□□□ -0.66
IFT88-201ENST00000319980 ZNF644Q9H582 1327 aaPredicted RBP10.95□□□□□ -0.66
IFT88-201ENST00000319980 MIER1Q8N108 512 aa10.95□□□□□ -0.66
IFT88-201ENST00000319980 UACAQ9BZF9 1416 aa10.94□□□□□ -0.66
IFT88-201ENST00000319980 CYB5RLQ6IPT4 315 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms