RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 OSCARQ8IYS5 282 aa15.54■□□□□ 0.08
RFX3-201ENST00000302303 CLASP1Q7Z460 1538 aa15.52■□□□□ 0.08
RFX3-201ENST00000302303 KIAA0586Q9BVV6 1533 aa15.52■□□□□ 0.08
RFX3-201ENST00000302303 UBTFP17480 764 aaKnown RBP15.5■□□□□ 0.07
RFX3-201ENST00000302303 TNIKQ9UKE5 1360 aa15.5■□□□□ 0.07
RFX3-201ENST00000302303 CTTNBP2Q8WZ74 1663 aa15.46■□□□□ 0.07
RFX3-201ENST00000302303 JPH4Q96JJ6 628 aa15.46■□□□□ 0.07
RFX3-201ENST00000302303 IQGAP2Q13576 1575 aa15.44■□□□□ 0.06
RFX3-201ENST00000302303 SHROOM2Q13796 1616 aa15.44■□□□□ 0.06
RFX3-201ENST00000302303 UGGT2Q9NYU1 1516 aa15.42■□□□□ 0.06
RFX3-201ENST00000302303 DISP1Q96F81 1524 aa15.39■□□□□ 0.05
RFX3-201ENST00000302303 ERCC6L2Q5T890 1561 aa15.38■□□□□ 0.05
RFX3-201ENST00000302303 PRG4Q92954 1404 aaPredicted RBP15.37■□□□□ 0.05
RFX3-201ENST00000302303 ARHGAP35Q9NRY4 1499 aa15.36■□□□□ 0.05
RFX3-201ENST00000302303 RANGAP1P46060 587 aaPredicted RBP15.35■□□□□ 0.05
RFX3-201ENST00000302303 SAMD9Q5K651 1589 aa15.35■□□□□ 0.05
RFX3-201ENST00000302303 CEP162Q5TB80 1403 aa15.35■□□□□ 0.05
RFX3-201ENST00000302303 CLIP1P30622 1438 aa15.32■□□□□ 0.04
RFX3-201ENST00000302303 KIAA0556O60303 1618 aa15.32■□□□□ 0.04
RFX3-201ENST00000302303 P3H3Q8IVL6 736 aa15.31■□□□□ 0.04
RFX3-201ENST00000302303 ARAP1Q96P48 1450 aa15.3■□□□□ 0.04
RFX3-201ENST00000302303 EFCAB5A4FU69 1503 aa15.29■□□□□ 0.04
RFX3-201ENST00000302303 ARHGEF11O15085 1522 aa15.29■□□□□ 0.04
RFX3-201ENST00000302303 DNAJC5Q9H3Z4 198 aa15.29■□□□□ 0.04
RFX3-201ENST00000302303 FHOD3Q2V2M9 1422 aa15.28■□□□□ 0.04
RFX3-201ENST00000302303 CARMIL2Q6F5E8 1435 aa15.28■□□□□ 0.04
RFX3-201ENST00000302303 RIMBP3CA6NJZ7 1639 aa15.25■□□□□ 0.03
RFX3-201ENST00000302303 RIMBP3BA6NNM3 1639 aa15.25■□□□□ 0.03
RFX3-201ENST00000302303 RIMBP3Q9UFD9 1639 aa15.25■□□□□ 0.03
RFX3-201ENST00000302303 PTPRGP23470 1445 aa15.22■□□□□ 0.03
RFX3-201ENST00000302303 PLB1Q6P1J6 1458 aa15.18■□□□□ 0.02
RFX3-201ENST00000302303 TTBK1Q5TCY1 1321 aaPredicted RBP15.17■□□□□ 0.02
RFX3-201ENST00000302303 ABCA8O94911 1581 aa15.16■□□□□ 0.02
RFX3-201ENST00000302303 FMN1Q68DA7 1419 aa15.15■□□□□ 0.02
RFX3-201ENST00000302303 CYB5RLQ6IPT4 315 aa15.14■□□□□ 0.01
RFX3-201ENST00000302303 PHF23Q9BUL5 403 aaPredicted RBP15.14■□□□□ 0.01
RFX3-201ENST00000302303 VPS8Q8N3P4 1428 aa15.14■□□□□ 0.01
RFX3-201ENST00000302303 UACAQ9BZF9 1416 aa15.13■□□□□ 0.01
RFX3-201ENST00000302303 UHRF1BP1LA0JNW5 1464 aa15.11■□□□□ 0.01
RFX3-201ENST00000302303 CASKIN1Q8WXD9 1431 aa15.11■□□□□ 0.01
RFX3-201ENST00000302303 NUP153P49790 1475 aaKnown RBP15.1■□□□□ 0.01
RFX3-201ENST00000302303 ADCY10Q96PN6 1610 aa15.1■□□□□ 0.01
RFX3-201ENST00000302303 PCF11O94913 1555 aaKnown RBP15.1■□□□□ 0.01
RFX3-201ENST00000302303 RAPGEF6Q8TEU7 1601 aa15.09■□□□□ 0.01
RFX3-201ENST00000302303 ABCC2Q92887 1545 aa15.09■□□□□ 0.01
RFX3-201ENST00000302303 ATP10BO94823 1461 aa15.07■□□□□ 0
RFX3-201ENST00000302303 FYCO1Q9BQS8 1478 aa15.07■□□□□ 0
RFX3-201ENST00000302303 LRRIQ1Q96JM4 1722 aa15.07■□□□□ 0
RFX3-201ENST00000302303 KDM5BQ9UGL1 1544 aa15.05■□□□□ -0
RFX3-201ENST00000302303 EPRSP07814 1512 aaKnown RBP15.04■□□□□ -0
RFX3-201ENST00000302303 ARID3CA6NKF2 412 aa15.02■□□□□ -0
RFX3-201ENST00000302303 CDK13Q14004 1512 aaKnown RBP15.02■□□□□ -0
RFX3-201ENST00000302303 ATP1B4Q9UN42 357 aaPredicted RBP15.02□□□□□ -0.01
RFX3-201ENST00000302303 HECW1Q76N89 1606 aa15.02□□□□□ -0.01
RFX3-201ENST00000302303 ZCCHC11Q5TAX3 1644 aaKnown RBP14.99□□□□□ -0.01
RFX3-201ENST00000302303 MAGI3Q5TCQ9 1506 aa14.98□□□□□ -0.01
RFX3-201ENST00000302303 MAP3K1Q13233 1512 aa14.97□□□□□ -0.01
RFX3-201ENST00000302303 KANK4Q5T7N3 995 aaPredicted RBP14.97□□□□□ -0.01
RFX3-201ENST00000302303 CCDC18Q5T9S5 1454 aa14.96□□□□□ -0.01
RFX3-201ENST00000302303 TIAM1Q13009 1591 aa14.96□□□□□ -0.01
RFX3-201ENST00000302303 CFAP43Q8NDM7 1665 aa14.92□□□□□ -0.02
RFX3-201ENST00000302303 ASXL2Q76L83 1435 aa14.92□□□□□ -0.02
RFX3-201ENST00000302303 MAPKBP1O60336 1514 aa14.91□□□□□ -0.02
RFX3-201ENST00000302303 LRRC9Q6ZRR7 1453 aa14.91□□□□□ -0.02
RFX3-201ENST00000302303 NPM1P06748 294 aaKnown RBP eCLIP14.91□□□□□ -0.02
RFX3-201ENST00000302303 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.9□□□□□ -0.02
RFX3-201ENST00000302303 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
RFX3-201ENST00000302303 PLEKHD1A6NEE1 506 aa14.89□□□□□ -0.03
RFX3-201ENST00000302303 TROQ12816 1431 aaPredicted RBP14.89□□□□□ -0.03
RFX3-201ENST00000302303 WDR7Q9Y4E6 1490 aa14.88□□□□□ -0.03
RFX3-201ENST00000302303 PPARGC1BQ86YN6 1023 aaKnown RBP14.87□□□□□ -0.03
RFX3-201ENST00000302303 CDK11AQ9UQ88 783 aaPredicted RBP14.86□□□□□ -0.03
RFX3-201ENST00000302303 APLP2Q06481 763 aa14.85□□□□□ -0.03
RFX3-201ENST00000302303 MTUS2Q5JR59 1369 aa14.85□□□□□ -0.03
RFX3-201ENST00000302303 KIF14Q15058 1648 aa14.84□□□□□ -0.03
RFX3-201ENST00000302303 EHBP1L1Q8N3D4 1523 aa14.83□□□□□ -0.03
RFX3-201ENST00000302303 KCNH8Q96L42 1107 aa14.83□□□□□ -0.04
RFX3-201ENST00000302303 ABCC10Q5T3U5 1492 aa14.83□□□□□ -0.04
RFX3-201ENST00000302303 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.81□□□□□ -0.04
RFX3-201ENST00000302303 NCOA2Q15596 1464 aa14.79□□□□□ -0.04
RFX3-201ENST00000302303 DIP2BQ9P265 1576 aa14.79□□□□□ -0.04
RFX3-201ENST00000302303 GLI2P10070 1586 aa14.78□□□□□ -0.04
RFX3-201ENST00000302303 PHLDB1Q86UU1 1377 aa14.78□□□□□ -0.04
RFX3-201ENST00000302303 TTC37Q6PGP7 1564 aa14.77□□□□□ -0.04
RFX3-201ENST00000302303 ABCA9Q8IUA7 1624 aa14.77□□□□□ -0.04
RFX3-201ENST00000302303 SUPT6HQ7KZ85 1726 aaKnown RBP14.76□□□□□ -0.05
RFX3-201ENST00000302303 FAM69CQ0P6D2 419 aa14.76□□□□□ -0.05
RFX3-201ENST00000302303 GPATCH8Q9UKJ3 1502 aaKnown RBP14.76□□□□□ -0.05
RFX3-201ENST00000302303 KIF13AQ9H1H9 1805 aa14.75□□□□□ -0.05
RFX3-201ENST00000302303 PLCH2O75038 1416 aa14.73□□□□□ -0.05
RFX3-201ENST00000302303 MAP3K4Q9Y6R4 1608 aa14.73□□□□□ -0.05
RFX3-201ENST00000302303 CDC42BPAQ5VT25 1732 aa14.71□□□□□ -0.06
RFX3-201ENST00000302303 CD109Q6YHK3 1445 aa14.71□□□□□ -0.06
RFX3-201ENST00000302303 MYOM3Q5VTT5 1437 aa14.7□□□□□ -0.06
RFX3-201ENST00000302303 CCNB3Q8WWL7 1395 aa14.7□□□□□ -0.06
RFX3-201ENST00000302303 CDC42BPBQ9Y5S2 1711 aa14.7□□□□□ -0.06
RFX3-201ENST00000302303 PPRC1Q5VV67 1664 aaKnown RBP14.69□□□□□ -0.06
RFX3-201ENST00000302303 PREX2Q70Z35 1606 aa14.67□□□□□ -0.06
RFX3-201ENST00000302303 ZNF644Q9H582 1327 aaPredicted RBP14.67□□□□□ -0.06
RFX3-201ENST00000302303 ARAP3Q8WWN8 1544 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms