RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 TIAM1Q13009 1591 aa18.89■□□□□ 0.61
HIF3A-204ENST00000300862 POLA1P09884 1462 aaPredicted RBP18.88■□□□□ 0.61
HIF3A-204ENST00000300862 TOPBP1Q92547 1522 aa18.87■□□□□ 0.61
HIF3A-204ENST00000300862 FAM50AQ14320 339 aaKnown RBP18.86■□□□□ 0.61
HIF3A-204ENST00000300862 PHLDB1Q86UU1 1377 aa18.85■□□□□ 0.61
HIF3A-204ENST00000300862 DNMBPQ6XZF7 1577 aa18.85■□□□□ 0.61
HIF3A-204ENST00000300862 FHOD3Q2V2M9 1422 aa18.85■□□□□ 0.61
HIF3A-204ENST00000300862 LRRC9Q6ZRR7 1453 aa18.85■□□□□ 0.61
HIF3A-204ENST00000300862 RAB3GAP2Q9H2M9 1393 aa18.84■□□□□ 0.61
HIF3A-204ENST00000300862 DNAJC5BQ9UF47 199 aa18.83■□□□□ 0.6
HIF3A-204ENST00000300862 ABCA10Q8WWZ4 1543 aa18.82■□□□□ 0.6
HIF3A-204ENST00000300862 FHAD1B1AJZ9 1412 aa18.81■□□□□ 0.6
HIF3A-204ENST00000300862 PCF11O94913 1555 aaKnown RBP18.8■□□□□ 0.6
HIF3A-204ENST00000300862 MAP3K1Q13233 1512 aa18.79■□□□□ 0.6
HIF3A-204ENST00000300862 TDRD9Q8NDG6 1382 aaKnown RBP18.76■□□□□ 0.59
HIF3A-204ENST00000300862 URB2Q14146 1524 aaKnown RBP18.74■□□□□ 0.59
HIF3A-204ENST00000300862 SETD5Q9C0A6 1442 aa18.74■□□□□ 0.59
HIF3A-204ENST00000300862 MAPKBP1O60336 1514 aa18.71■□□□□ 0.59
HIF3A-204ENST00000300862 SIN3AQ96ST3 1273 aa18.7■□□□□ 0.58
HIF3A-204ENST00000300862 CFAP43Q8NDM7 1665 aa18.69■□□□□ 0.58
HIF3A-204ENST00000300862 CASKIN1Q8WXD9 1431 aa18.67■□□□□ 0.58
HIF3A-204ENST00000300862 CUL7Q14999 1698 aa18.67■□□□□ 0.58
HIF3A-204ENST00000300862 FYCO1Q9BQS8 1478 aa18.67■□□□□ 0.58
HIF3A-204ENST00000300862 EFCAB5A4FU69 1503 aa18.65■□□□□ 0.58
HIF3A-204ENST00000300862 LAMC3Q9Y6N6 1575 aa18.65■□□□□ 0.58
HIF3A-204ENST00000300862 CTTNBP2Q8WZ74 1663 aa18.63■□□□□ 0.57
HIF3A-204ENST00000300862 GAPVD1Q14C86 1478 aa18.62■□□□□ 0.57
HIF3A-204ENST00000300862 FMN1Q68DA7 1419 aa18.61■□□□□ 0.57
HIF3A-204ENST00000300862 PDS5BQ9NTI5 1447 aa18.6■□□□□ 0.57
HIF3A-204ENST00000300862 AQRO60306 1485 aaKnown RBP eCLIP18.6■□□□□ 0.57
HIF3A-204ENST00000300862 MTUS2Q5JR59 1369 aa18.6■□□□□ 0.57
HIF3A-204ENST00000300862 WDR97A6NE52 1622 aa18.59■□□□□ 0.57
HIF3A-204ENST00000300862 SNAPC4Q5SXM2 1469 aa18.58■□□□□ 0.56
HIF3A-204ENST00000300862 ABCA5Q8WWZ7 1642 aa18.57■□□□□ 0.56
HIF3A-204ENST00000300862 FGD6Q6ZV73 1430 aa18.55■□□□□ 0.56
HIF3A-204ENST00000300862 HIRIP3Q9BW71 556 aaPredicted RBP18.53■□□□□ 0.56
HIF3A-204ENST00000300862 KIF21AQ7Z4S6 1674 aa18.53■□□□□ 0.56
HIF3A-204ENST00000300862 KCNH8Q96L42 1107 aa18.53■□□□□ 0.56
HIF3A-204ENST00000300862 PTPRKQ15262 1439 aa18.51■□□□□ 0.55
HIF3A-204ENST00000300862 SAMD9Q5K651 1589 aa18.49■□□□□ 0.55
HIF3A-204ENST00000300862 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.49■□□□□ 0.55
HIF3A-204ENST00000300862 DDX10Q13206 875 aaKnown RBP18.49■□□□□ 0.55
HIF3A-204ENST00000300862 ARID3CA6NKF2 412 aa18.49■□□□□ 0.55
HIF3A-204ENST00000300862 LRRIQ1Q96JM4 1722 aa18.48■□□□□ 0.55
HIF3A-204ENST00000300862 GRIN2BQ13224 1484 aa18.47■□□□□ 0.55
HIF3A-204ENST00000300862 NCOA2Q15596 1464 aa18.47■□□□□ 0.55
HIF3A-204ENST00000300862 TARBP1Q13395 1621 aaKnown RBP18.45■□□□□ 0.54
HIF3A-204ENST00000300862 PPP1R15AO75807 674 aaPredicted RBP18.44■□□□□ 0.54
HIF3A-204ENST00000300862 CCDC18Q5T9S5 1454 aa18.43■□□□□ 0.54
HIF3A-204ENST00000300862 MYOM3Q5VTT5 1437 aa18.43■□□□□ 0.54
HIF3A-204ENST00000300862 CHIC2Q9UKJ5 165 aa18.42■□□□□ 0.54
HIF3A-204ENST00000300862 RRP7BPQ9NSQ0 103 aa18.4■□□□□ 0.54
HIF3A-204ENST00000300862 HFM1A2PYH4 1435 aa18.4■□□□□ 0.54
HIF3A-204ENST00000300862 MAGI3Q5TCQ9 1506 aa18.4■□□□□ 0.54
HIF3A-204ENST00000300862 TIMELESSQ9UNS1 1208 aa18.39■□□□□ 0.54
HIF3A-204ENST00000300862 NAIPQ13075 1403 aa18.38■□□□□ 0.53
HIF3A-204ENST00000300862 TONSLQ96HA7 1378 aa18.37■□□□□ 0.53
HIF3A-204ENST00000300862 PTPN23Q9H3S7 1636 aa18.36■□□□□ 0.53
HIF3A-204ENST00000300862 SUPT6HQ7KZ85 1726 aaKnown RBP18.36■□□□□ 0.53
HIF3A-204ENST00000300862 EHBP1L1Q8N3D4 1523 aa18.36■□□□□ 0.53
HIF3A-204ENST00000300862 UACAQ9BZF9 1416 aa18.35■□□□□ 0.53
HIF3A-204ENST00000300862 PBRM1Q86U86 1689 aa18.33■□□□□ 0.53
HIF3A-204ENST00000300862 THOC2Q8NI27 1593 aaKnown RBP18.33■□□□□ 0.52
HIF3A-204ENST00000300862 UGGT2Q9NYU1 1516 aa18.33■□□□□ 0.52
HIF3A-204ENST00000300862 SUPT16HQ9Y5B9 1047 aaKnown RBP18.33■□□□□ 0.52
HIF3A-204ENST00000300862 CDK13Q14004 1512 aaKnown RBP18.32■□□□□ 0.52
HIF3A-204ENST00000300862 IQGAP2Q13576 1575 aa18.32■□□□□ 0.52
HIF3A-204ENST00000300862 ZNF608Q9ULD9 1512 aaPredicted RBP18.31■□□□□ 0.52
HIF3A-204ENST00000300862 MRC2Q9UBG0 1479 aa18.3■□□□□ 0.52
HIF3A-204ENST00000300862 TRIM52Q96A61 297 aa18.3■□□□□ 0.52
HIF3A-204ENST00000300862 EPRSP07814 1512 aaKnown RBP18.3■□□□□ 0.52
HIF3A-204ENST00000300862 ADAMTS12P58397 1594 aa18.29■□□□□ 0.52
HIF3A-204ENST00000300862 ARHGEF11O15085 1522 aa18.28■□□□□ 0.52
HIF3A-204ENST00000300862 HECW1Q76N89 1606 aa18.26■□□□□ 0.51
HIF3A-204ENST00000300862 FOXD1Q16676 465 aa18.23■□□□□ 0.51
HIF3A-204ENST00000300862 ANP32CO43423 234 aa18.22■□□□□ 0.51
HIF3A-204ENST00000300862 TCOF1Q13428 1488 aaKnown RBP18.22■□□□□ 0.51
HIF3A-204ENST00000300862 KDM6BO15054 1643 aa18.21■□□□□ 0.51
HIF3A-204ENST00000300862 WDR62O43379 1518 aa18.21■□□□□ 0.51
HIF3A-204ENST00000300862 ZNF644Q9H582 1327 aaPredicted RBP18.2■□□□□ 0.5
HIF3A-204ENST00000300862 DENND4BO75064 1496 aaPredicted RBP18.19■□□□□ 0.5
HIF3A-204ENST00000300862 IFT140Q96RY7 1462 aa18.19■□□□□ 0.5
HIF3A-204ENST00000300862 MPHOSPH9Q99550 1183 aa18.18■□□□□ 0.5
HIF3A-204ENST00000300862 KDM5BQ9UGL1 1544 aa18.17■□□□□ 0.5
HIF3A-204ENST00000300862 DISP1Q96F81 1524 aa18.16■□□□□ 0.5
HIF3A-204ENST00000300862 MIA2Q96PC5 1412 aa18.16■□□□□ 0.5
HIF3A-204ENST00000300862 TSHZ2Q9NRE2 1034 aa18.15■□□□□ 0.5
HIF3A-204ENST00000300862 FBLN2P98095 1184 aa18.15■□□□□ 0.5
HIF3A-204ENST00000300862 BCANQ96GW7 911 aa18.15■□□□□ 0.5
HIF3A-204ENST00000300862 KIAA0586Q9BVV6 1533 aa18.14■□□□□ 0.5
HIF3A-204ENST00000300862 CCER2I3L3R5 266 aa18.13■□□□□ 0.49
HIF3A-204ENST00000300862 HSPA5P11021 654 aaKnown RBP18.13■□□□□ 0.49
HIF3A-204ENST00000300862 NUP153P49790 1475 aaKnown RBP18.12■□□□□ 0.49
HIF3A-204ENST00000300862 GCC2Q8IWJ2 1684 aa18.12■□□□□ 0.49
HIF3A-204ENST00000300862 L3MBTL2Q969R5 705 aa18.11■□□□□ 0.49
HIF3A-204ENST00000300862 KIAA0556O60303 1618 aa18.11■□□□□ 0.49
HIF3A-204ENST00000300862 GRIN2AQ12879 1464 aa18.1■□□□□ 0.49
HIF3A-204ENST00000300862 CHMP7Q8WUX9 453 aaPredicted RBP18.1■□□□□ 0.49
HIF3A-204ENST00000300862 AKNAQ7Z591 1439 aa18.09■□□□□ 0.49
HIF3A-204ENST00000300862 DAPK1P53355 1430 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms