RNA–Protein interactions for RNA: ENST00000281142.9

SCLT1-201, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SCLT1, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-201ENST00000281142 CSRNP3Q8WYN3 585 aa17■□□□□ 0.31
SCLT1-201ENST00000281142 MIER1Q8N108 512 aa16.99■□□□□ 0.31
SCLT1-201ENST00000281142 SNAPC4Q5SXM2 1469 aa16.97■□□□□ 0.31
SCLT1-201ENST00000281142 CUL7Q14999 1698 aa16.95■□□□□ 0.3
SCLT1-201ENST00000281142 ADAMTS12P58397 1594 aa16.94■□□□□ 0.3
SCLT1-201ENST00000281142 PRXQ9BXM0 1461 aa16.93■□□□□ 0.3
SCLT1-201ENST00000281142 MAGI1Q96QZ7 1491 aaPredicted RBP16.92■□□□□ 0.3
SCLT1-201ENST00000281142 UBTFP17480 764 aaKnown RBP16.92■□□□□ 0.3
SCLT1-201ENST00000281142 CARMIL1Q5VZK9 1371 aa16.92■□□□□ 0.3
SCLT1-201ENST00000281142 HNRNPUL2Q1KMD3 747 aaKnown RBP16.9■□□□□ 0.3
SCLT1-201ENST00000281142 KIF21BO75037 1637 aa16.9■□□□□ 0.3
SCLT1-201ENST00000281142 TNIKQ9UKE5 1360 aa16.9■□□□□ 0.3
SCLT1-201ENST00000281142 FHAD1B1AJZ9 1412 aa16.89■□□□□ 0.29
SCLT1-201ENST00000281142 RAPGEF2Q9Y4G8 1499 aa16.88■□□□□ 0.29
SCLT1-201ENST00000281142 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
SCLT1-201ENST00000281142 CHD1O14646 1710 aa16.86■□□□□ 0.29
SCLT1-201ENST00000281142 FBLN2P98095 1184 aa16.83■□□□□ 0.28
SCLT1-201ENST00000281142 GOLGA3Q08378 1498 aa16.82■□□□□ 0.28
SCLT1-201ENST00000281142 GRIN2AQ12879 1464 aa16.82■□□□□ 0.28
SCLT1-201ENST00000281142 CHMP7Q8WUX9 453 aaPredicted RBP16.81■□□□□ 0.28
SCLT1-201ENST00000281142 CEP170Q5SW79 1584 aa16.76■□□□□ 0.27
SCLT1-201ENST00000281142 CTTNBP2Q8WZ74 1663 aa16.74■□□□□ 0.27
SCLT1-201ENST00000281142 NUP160Q12769 1436 aa16.71■□□□□ 0.27
SCLT1-201ENST00000281142 RANGAP1P46060 587 aaPredicted RBP16.68■□□□□ 0.26
SCLT1-201ENST00000281142 IQGAP2Q13576 1575 aa16.65■□□□□ 0.26
SCLT1-201ENST00000281142 KIAA0586Q9BVV6 1533 aa16.65■□□□□ 0.26
SCLT1-201ENST00000281142 CLASP1Q7Z460 1538 aa16.63■□□□□ 0.25
SCLT1-201ENST00000281142 CLIP1P30622 1438 aa16.62■□□□□ 0.25
SCLT1-201ENST00000281142 OSCARQ8IYS5 282 aa16.61■□□□□ 0.25
SCLT1-201ENST00000281142 SUPT16HQ9Y5B9 1047 aaKnown RBP16.61■□□□□ 0.25
SCLT1-201ENST00000281142 BCL11AQ9H165 835 aa16.6■□□□□ 0.25
SCLT1-201ENST00000281142 SHROOM2Q13796 1616 aa16.57■□□□□ 0.24
SCLT1-201ENST00000281142 VPS8Q8N3P4 1428 aa16.56■□□□□ 0.24
SCLT1-201ENST00000281142 UGGT2Q9NYU1 1516 aa16.55■□□□□ 0.24
SCLT1-201ENST00000281142 JPH4Q96JJ6 628 aa16.54■□□□□ 0.24
SCLT1-201ENST00000281142 APLP2Q06481 763 aa16.54■□□□□ 0.24
SCLT1-201ENST00000281142 SAMD9Q5K651 1589 aa16.53■□□□□ 0.24
SCLT1-201ENST00000281142 ARHGAP35Q9NRY4 1499 aa16.52■□□□□ 0.24
SCLT1-201ENST00000281142 DISP1Q96F81 1524 aa16.51■□□□□ 0.23
SCLT1-201ENST00000281142 ERCC6L2Q5T890 1561 aa16.5■□□□□ 0.23
SCLT1-201ENST00000281142 DHX57Q6P158 1386 aaKnown RBP16.5■□□□□ 0.23
SCLT1-201ENST00000281142 KIAA0556O60303 1618 aa16.5■□□□□ 0.23
SCLT1-201ENST00000281142 PRG4Q92954 1404 aaPredicted RBP16.49■□□□□ 0.23
SCLT1-201ENST00000281142 EFCAB5A4FU69 1503 aa16.49■□□□□ 0.23
SCLT1-201ENST00000281142 P3H3Q8IVL6 736 aa16.49■□□□□ 0.23
SCLT1-201ENST00000281142 TSHZ2Q9NRE2 1034 aa16.48■□□□□ 0.23
SCLT1-201ENST00000281142 ARAP1Q96P48 1450 aa16.47■□□□□ 0.23
SCLT1-201ENST00000281142 ANP32EQ9BTT0 268 aa16.47■□□□□ 0.23
SCLT1-201ENST00000281142 FHOD3Q2V2M9 1422 aa16.46■□□□□ 0.23
SCLT1-201ENST00000281142 KCNH8Q96L42 1107 aa16.45■□□□□ 0.22
SCLT1-201ENST00000281142 CARMIL2Q6F5E8 1435 aa16.43■□□□□ 0.22
SCLT1-201ENST00000281142 KANK4Q5T7N3 995 aaPredicted RBP16.41■□□□□ 0.22
SCLT1-201ENST00000281142 ARHGEF11O15085 1522 aa16.38■□□□□ 0.21
SCLT1-201ENST00000281142 BCANQ96GW7 911 aa16.38■□□□□ 0.21
SCLT1-201ENST00000281142 CLSPNQ9HAW4 1339 aa16.37■□□□□ 0.21
SCLT1-201ENST00000281142 RIMBP3CA6NJZ7 1639 aa16.36■□□□□ 0.21
SCLT1-201ENST00000281142 RIMBP3BA6NNM3 1639 aa16.36■□□□□ 0.21
SCLT1-201ENST00000281142 RIMBP3Q9UFD9 1639 aa16.36■□□□□ 0.21
SCLT1-201ENST00000281142 PTPRGP23470 1445 aa16.33■□□□□ 0.2
SCLT1-201ENST00000281142 FMN1Q68DA7 1419 aa16.33■□□□□ 0.2
SCLT1-201ENST00000281142 ITGAEP38570 1179 aa16.32■□□□□ 0.2
SCLT1-201ENST00000281142 PCF11O94913 1555 aaKnown RBP16.32■□□□□ 0.2
SCLT1-201ENST00000281142 PLB1Q6P1J6 1458 aa16.3■□□□□ 0.2
SCLT1-201ENST00000281142 RAPGEF6Q8TEU7 1601 aa16.29■□□□□ 0.2
SCLT1-201ENST00000281142 LRRIQ1Q96JM4 1722 aa16.28■□□□□ 0.2
SCLT1-201ENST00000281142 ABCA8O94911 1581 aa16.28■□□□□ 0.2
SCLT1-201ENST00000281142 CASKIN1Q8WXD9 1431 aa16.26■□□□□ 0.19
SCLT1-201ENST00000281142 FYCO1Q9BQS8 1478 aa16.25■□□□□ 0.19
SCLT1-201ENST00000281142 FKBP8Q14318 412 aa16.24■□□□□ 0.19
SCLT1-201ENST00000281142 UACAQ9BZF9 1416 aa16.23■□□□□ 0.19
SCLT1-201ENST00000281142 HECW1Q76N89 1606 aa16.23■□□□□ 0.19
SCLT1-201ENST00000281142 ATP1B4Q9UN42 357 aaPredicted RBP16.23■□□□□ 0.19
SCLT1-201ENST00000281142 NUP153P49790 1475 aaKnown RBP16.23■□□□□ 0.19
SCLT1-201ENST00000281142 ADCY10Q96PN6 1610 aa16.22■□□□□ 0.19
SCLT1-201ENST00000281142 RRBP1Q9P2E9 1410 aaKnown RBP16.22■□□□□ 0.19
SCLT1-201ENST00000281142 ABCC2Q92887 1545 aa16.22■□□□□ 0.19
SCLT1-201ENST00000281142 DNAJC5Q9H3Z4 198 aa16.22■□□□□ 0.19
SCLT1-201ENST00000281142 ARID3CA6NKF2 412 aa16.2■□□□□ 0.18
SCLT1-201ENST00000281142 CYB5RLQ6IPT4 315 aa16.2■□□□□ 0.18
SCLT1-201ENST00000281142 DDX10Q13206 875 aaKnown RBP16.19■□□□□ 0.18
SCLT1-201ENST00000281142 UHRF1BP1LA0JNW5 1464 aa16.19■□□□□ 0.18
SCLT1-201ENST00000281142 EPRSP07814 1512 aaKnown RBP16.18■□□□□ 0.18
SCLT1-201ENST00000281142 CDK13Q14004 1512 aaKnown RBP16.18■□□□□ 0.18
SCLT1-201ENST00000281142 CCNB3Q8WWL7 1395 aa16.18■□□□□ 0.18
SCLT1-201ENST00000281142 CFAP43Q8NDM7 1665 aa16.17■□□□□ 0.18
SCLT1-201ENST00000281142 RAB3GAP2Q9H2M9 1393 aa16.16■□□□□ 0.18
SCLT1-201ENST00000281142 TIAM1Q13009 1591 aa16.16■□□□□ 0.18
SCLT1-201ENST00000281142 MAPKBP1O60336 1514 aa16.15■□□□□ 0.18
SCLT1-201ENST00000281142 HIRIP3Q9BW71 556 aaPredicted RBP16.15■□□□□ 0.18
SCLT1-201ENST00000281142 ATP10BO94823 1461 aa16.15■□□□□ 0.18
SCLT1-201ENST00000281142 ZCCHC11Q5TAX3 1644 aaKnown RBP16.15■□□□□ 0.18
SCLT1-201ENST00000281142 CCDC18Q5T9S5 1454 aa16.14■□□□□ 0.17
SCLT1-201ENST00000281142 SIN3AQ96ST3 1273 aa16.14■□□□□ 0.17
SCLT1-201ENST00000281142 KDM5BQ9UGL1 1544 aa16.13■□□□□ 0.17
SCLT1-201ENST00000281142 TRIM52Q96A61 297 aa16.11■□□□□ 0.17
SCLT1-201ENST00000281142 MAP3K1Q13233 1512 aa16.11■□□□□ 0.17
SCLT1-201ENST00000281142 MAGI3Q5TCQ9 1506 aa16.11■□□□□ 0.17
SCLT1-201ENST00000281142 RBM19Q9Y4C8 960 aaKnown RBP16.1■□□□□ 0.17
SCLT1-201ENST00000281142 LRRC9Q6ZRR7 1453 aa16.06■□□□□ 0.16
SCLT1-201ENST00000281142 PRKCSHP14314 528 aaPredicted RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms