RNA–Protein interactions for RNA: ENST00000272638.13

UBXN4-201, Transcript of UBX domain protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBXN4, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-201ENST00000272638 DNAJC5BQ9UF47 199 aa17.66■□□□□ 0.42
UBXN4-201ENST00000272638 IGF1RP08069 1367 aa17.66■□□□□ 0.42
UBXN4-201ENST00000272638 EIF4G1Q04637 1599 aaKnown RBP17.65■□□□□ 0.42
UBXN4-201ENST00000272638 DHX57Q6P158 1386 aaKnown RBP17.64■□□□□ 0.41
UBXN4-201ENST00000272638 KCNH8Q96L42 1107 aa17.63■□□□□ 0.41
UBXN4-201ENST00000272638 ARAP1Q96P48 1450 aa17.63■□□□□ 0.41
UBXN4-201ENST00000272638 FKBP8Q14318 412 aa17.62■□□□□ 0.41
UBXN4-201ENST00000272638 RAD54L2Q9Y4B4 1467 aa17.61■□□□□ 0.41
UBXN4-201ENST00000272638 NCAPD3P42695 1498 aa17.61■□□□□ 0.41
UBXN4-201ENST00000272638 FOXD1Q16676 465 aa17.6■□□□□ 0.41
UBXN4-201ENST00000272638 CHMP7Q8WUX9 453 aaPredicted RBP17.57■□□□□ 0.4
UBXN4-201ENST00000272638 FGD5Q6ZNL6 1462 aa17.57■□□□□ 0.4
UBXN4-201ENST00000272638 CUX1P39880 1505 aa17.56■□□□□ 0.4
UBXN4-201ENST00000272638 IRX6P78412 446 aaPredicted RBP17.56■□□□□ 0.4
UBXN4-201ENST00000272638 HNRNPUQ00839 825 aaKnown RBP eCLIP17.55■□□□□ 0.4
UBXN4-201ENST00000272638 FANCD2Q9BXW9 1451 aa17.54■□□□□ 0.4
UBXN4-201ENST00000272638 NESP48681 1621 aa17.53■□□□□ 0.4
UBXN4-201ENST00000272638 FAM9BQ8IZU0 186 aa17.53■□□□□ 0.4
UBXN4-201ENST00000272638 SETD5Q9C0A6 1442 aa17.52■□□□□ 0.4
UBXN4-201ENST00000272638 FHAD1B1AJZ9 1412 aa17.52■□□□□ 0.39
UBXN4-201ENST00000272638 CLSPNQ9HAW4 1339 aa17.51■□□□□ 0.39
UBXN4-201ENST00000272638 PRXQ9BXM0 1461 aa17.51■□□□□ 0.39
UBXN4-201ENST00000272638 CDK11AQ9UQ88 783 aaPredicted RBP17.5■□□□□ 0.39
UBXN4-201ENST00000272638 CFTRP13569 1480 aa17.5■□□□□ 0.39
UBXN4-201ENST00000272638 ARHGAP35Q9NRY4 1499 aa17.49■□□□□ 0.39
UBXN4-201ENST00000272638 KDM2AQ9Y2K7 1162 aa17.49■□□□□ 0.39
UBXN4-201ENST00000272638 SLC4A1APQ9BWU0 796 aaKnown RBP17.48■□□□□ 0.39
UBXN4-201ENST00000272638 PHLDB1Q86UU1 1377 aa17.48■□□□□ 0.39
UBXN4-201ENST00000272638 TOP2BQ02880 1626 aa17.48■□□□□ 0.39
UBXN4-201ENST00000272638 ERICH6Q7L0X2 663 aa17.47■□□□□ 0.39
UBXN4-201ENST00000272638 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.45■□□□□ 0.385e-8■■■□□ 16.7
UBXN4-201ENST00000272638 SALL2Q9Y467 1007 aaPredicted RBP17.42■□□□□ 0.38
UBXN4-201ENST00000272638 CFDP1Q9UEE9 299 aaPredicted RBP17.39■□□□□ 0.37
UBXN4-201ENST00000272638 SUPT16HQ9Y5B9 1047 aaKnown RBP17.39■□□□□ 0.37
UBXN4-201ENST00000272638 PEG3Q9GZU2 1588 aa17.38■□□□□ 0.37
UBXN4-201ENST00000272638 PPP1R15AO75807 674 aaPredicted RBP17.37■□□□□ 0.37
UBXN4-201ENST00000272638 EIF4G2P78344 907 aaKnown RBP eCLIP17.37■□□□□ 0.37
UBXN4-201ENST00000272638 MRS2Q9HD23 443 aa17.35■□□□□ 0.37
UBXN4-201ENST00000272638 PDS5BQ9NTI5 1447 aa17.34■□□□□ 0.37
UBXN4-201ENST00000272638 RGL3Q3MIN7 710 aa17.33■□□□□ 0.36
UBXN4-201ENST00000272638 ERICH3Q5RHP9 1530 aa17.32■□□□□ 0.36
UBXN4-201ENST00000272638 FMN1Q68DA7 1419 aa17.31■□□□□ 0.36
UBXN4-201ENST00000272638 HMGXB3Q12766 1538 aa17.31■□□□□ 0.36
UBXN4-201ENST00000272638 TSPY4P0CV99 314 aa17.31■□□□□ 0.36
UBXN4-201ENST00000272638 TSPY10P0CW01 314 aa17.31■□□□□ 0.36
UBXN4-201ENST00000272638 CC2D2AQ9P2K1 1620 aa17.3■□□□□ 0.36
UBXN4-201ENST00000272638 LRRC9Q6ZRR7 1453 aa17.29■□□□□ 0.36
UBXN4-201ENST00000272638 HSPA5P11021 654 aaKnown RBP17.29■□□□□ 0.36
UBXN4-201ENST00000272638 PLEKHD1A6NEE1 506 aa17.29■□□□□ 0.36
UBXN4-201ENST00000272638 AQRO60306 1485 aaKnown RBP eCLIP17.28■□□□□ 0.361e-8■■■■□ 24.4
UBXN4-201ENST00000272638 ZNF644Q9H582 1327 aaPredicted RBP17.28■□□□□ 0.36
UBXN4-201ENST00000272638 ERCC6Q03468 1493 aa17.28■□□□□ 0.36
UBXN4-201ENST00000272638 SENP3Q9H4L4 574 aaPredicted RBP17.27■□□□□ 0.35
UBXN4-201ENST00000272638 MPHOSPH9Q99550 1183 aa17.26■□□□□ 0.35
UBXN4-201ENST00000272638 RRBP1Q9P2E9 1410 aaKnown RBP17.26■□□□□ 0.35
UBXN4-201ENST00000272638 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
UBXN4-201ENST00000272638 L3MBTL2Q969R5 705 aa17.25■□□□□ 0.35
UBXN4-201ENST00000272638 GAPVD1Q14C86 1478 aa17.24■□□□□ 0.35
UBXN4-201ENST00000272638 TOPBP1Q92547 1522 aa17.21■□□□□ 0.35
UBXN4-201ENST00000272638 FGD6Q6ZV73 1430 aa17.17■□□□□ 0.34
UBXN4-201ENST00000272638 PKD2Q13563 968 aa17.17■□□□□ 0.34
UBXN4-201ENST00000272638 TMC1Q8TDI8 760 aa17.17■□□□□ 0.34
UBXN4-201ENST00000272638 CCDC18Q5T9S5 1454 aa17.15■□□□□ 0.34
UBXN4-201ENST00000272638 TIMELESSQ9UNS1 1208 aa17.15■□□□□ 0.34
UBXN4-201ENST00000272638 CHGAP10645 457 aaKnown RBP17.13■□□□□ 0.33
UBXN4-201ENST00000272638 CARD11Q9BXL7 1154 aa17.13■□□□□ 0.33
UBXN4-201ENST00000272638 BIVM-ERCC5R4GMW8 1640 aa17.12■□□□□ 0.33
UBXN4-201ENST00000272638 TIAM1Q13009 1591 aa17.12■□□□□ 0.33
UBXN4-201ENST00000272638 DCAF11Q8TEB1 546 aa17.12■□□□□ 0.33
UBXN4-201ENST00000272638 JPH4Q96JJ6 628 aa17.12■□□□□ 0.33
UBXN4-201ENST00000272638 HNRNPMP52272 730 aaKnown RBP eCLIP17.12■□□□□ 0.33
UBXN4-201ENST00000272638 CASKIN1Q8WXD9 1431 aa17.1■□□□□ 0.33
UBXN4-201ENST00000272638 NCOA2Q15596 1464 aa17.08■□□□□ 0.32
UBXN4-201ENST00000272638 WDR97A6NE52 1622 aa17.06■□□□□ 0.32
UBXN4-201ENST00000272638 PCF11O94913 1555 aaKnown RBP17.05■□□□□ 0.32
UBXN4-201ENST00000272638 MYOM3Q5VTT5 1437 aa17.05■□□□□ 0.32
UBXN4-201ENST00000272638 CCER2I3L3R5 266 aa17.04■□□□□ 0.32
UBXN4-201ENST00000272638 B4GALNT3Q6L9W6 998 aa17.04■□□□□ 0.32
UBXN4-201ENST00000272638 NUP155O75694 1391 aa17.02■□□□□ 0.32
UBXN4-201ENST00000272638 TSHZ2Q9NRE2 1034 aa17.01■□□□□ 0.31
UBXN4-201ENST00000272638 URB2Q14146 1524 aaKnown RBP17■□□□□ 0.31
UBXN4-201ENST00000272638 NPM2Q86SE8 214 aaKnown RBP17■□□□□ 0.31
UBXN4-201ENST00000272638 ABCA10Q8WWZ4 1543 aa17■□□□□ 0.31
UBXN4-201ENST00000272638 DNMBPQ6XZF7 1577 aa17■□□□□ 0.31
UBXN4-201ENST00000272638 FYCO1Q9BQS8 1478 aa17■□□□□ 0.31
UBXN4-201ENST00000272638 MYT1Q01538 1121 aa16.98■□□□□ 0.31
UBXN4-201ENST00000272638 CC2D1BQ5T0F9 858 aaKnown RBP16.98■□□□□ 0.31
UBXN4-201ENST00000272638 CCDC136Q96JN2 1154 aa16.97■□□□□ 0.31
UBXN4-201ENST00000272638 UACAQ9BZF9 1416 aa16.97■□□□□ 0.31
UBXN4-201ENST00000272638 WASHC2AQ641Q2 1341 aa16.97■□□□□ 0.31
UBXN4-201ENST00000272638 CCDC184Q52MB2 194 aa16.96■□□□□ 0.31
UBXN4-201ENST00000272638 CDK13Q14004 1512 aaKnown RBP16.95■□□□□ 0.3
UBXN4-201ENST00000272638 NBPF8Q3BBV2 869 aa16.95■□□□□ 0.3
UBXN4-201ENST00000272638 PTPRKQ15262 1439 aa16.95■□□□□ 0.3
UBXN4-201ENST00000272638 NAIPQ13075 1403 aa16.91■□□□□ 0.3
UBXN4-201ENST00000272638 CARMIL2Q6F5E8 1435 aa16.91■□□□□ 0.3
UBXN4-201ENST00000272638 ST20-MTHFSA0A0A6YYL1 179 aa16.9■□□□□ 0.3
UBXN4-201ENST00000272638 PRG4Q92954 1404 aaPredicted RBP16.9■□□□□ 0.3
UBXN4-201ENST00000272638 PRKRIP1Q9H875 184 aaPredicted RBP16.9■□□□□ 0.3
UBXN4-201ENST00000272638 C11orf95C9JLR9 678 aaPredicted RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms