RNA–Protein interactions for RNA: ENST00000263066.10

LDB3-201, Transcript of LIM domain binding 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDB3, Length 3,873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-201ENST00000263066 PLEKHG5O94827 1062 aa11.78□□□□□ -0.52
LDB3-201ENST00000263066 PRDM2Q13029 1718 aa11.77□□□□□ -0.53
LDB3-201ENST00000263066 RUSC2Q8N2Y8 1516 aa11.77□□□□□ -0.53
LDB3-201ENST00000263066 CADPSQ9ULU8 1353 aa11.76□□□□□ -0.53
LDB3-201ENST00000263066 CC2D2AQ9P2K1 1620 aa11.76□□□□□ -0.53
LDB3-201ENST00000263066 KCNH8Q96L42 1107 aa11.76□□□□□ -0.53
LDB3-201ENST00000263066 SOGA1O94964 1423 aa11.74□□□□□ -0.53
LDB3-201ENST00000263066 HMGXB3Q12766 1538 aa11.72□□□□□ -0.53
LDB3-201ENST00000263066 ERICH6BQ5W0A0 696 aa11.71□□□□□ -0.54
LDB3-201ENST00000263066 PDS5BQ9NTI5 1447 aa11.69□□□□□ -0.54
LDB3-201ENST00000263066 SENP3Q9H4L4 574 aaPredicted RBP11.69□□□□□ -0.54
LDB3-201ENST00000263066 NCAPD3P42695 1498 aa11.68□□□□□ -0.54
LDB3-201ENST00000263066 CUX2O14529 1486 aa11.68□□□□□ -0.54
LDB3-201ENST00000263066 BIVM-ERCC5R4GMW8 1640 aa11.68□□□□□ -0.54
LDB3-201ENST00000263066 CNGB1Q14028 1251 aaPredicted RBP11.67□□□□□ -0.54
LDB3-201ENST00000263066 TRHP20396 242 aaPredicted RBP11.66□□□□□ -0.54
LDB3-201ENST00000263066 NPM1P06748 294 aaKnown RBP eCLIP11.65□□□□□ -0.54
LDB3-201ENST00000263066 IL27Q8NEV9 243 aa11.64□□□□□ -0.55
LDB3-201ENST00000263066 A0A0U1RQG5 324 aaPredicted RBP11.63□□□□□ -0.55
LDB3-201ENST00000263066 TIMELESSQ9UNS1 1208 aa11.63□□□□□ -0.55
LDB3-201ENST00000263066 VSIG10Q8N0Z9 540 aa11.63□□□□□ -0.55
LDB3-201ENST00000263066 FANCD2Q9BXW9 1451 aa11.63□□□□□ -0.55
LDB3-201ENST00000263066 CHIC2Q9UKJ5 165 aa11.61□□□□□ -0.55
LDB3-201ENST00000263066 CYB5RLQ6IPT4 315 aa11.61□□□□□ -0.55
LDB3-201ENST00000263066 DAXXQ9UER7 740 aaPredicted RBP11.61□□□□□ -0.55
LDB3-201ENST00000263066 RAD54L2Q9Y4B4 1467 aa11.6□□□□□ -0.55
LDB3-201ENST00000263066 CUX1P39880 1505 aa11.59□□□□□ -0.55
LDB3-201ENST00000263066 TRIM52Q96A61 297 aa11.59□□□□□ -0.55
LDB3-201ENST00000263066 TOP2BQ02880 1626 aa11.59□□□□□ -0.55
LDB3-201ENST00000263066 CEP164Q9UPV0 1460 aa11.57□□□□□ -0.56
LDB3-201ENST00000263066 KIF27Q86VH2 1401 aa11.57□□□□□ -0.56
LDB3-201ENST00000263066 IRX6P78412 446 aaPredicted RBP11.57□□□□□ -0.56
LDB3-201ENST00000263066 MSH5O43196 834 aa11.56□□□□□ -0.56
LDB3-201ENST00000263066 POLR3GLQ9BT43 218 aa11.56□□□□□ -0.56
LDB3-201ENST00000263066 AQRO60306 1485 aaKnown RBP eCLIP11.56□□□□□ -0.56
LDB3-201ENST00000263066 CARMIL1Q5VZK9 1371 aa11.55□□□□□ -0.56
LDB3-201ENST00000263066 ANP32AP39687 249 aaKnown RBP11.55□□□□□ -0.56
LDB3-201ENST00000263066 NOP58Q9Y2X3 529 aaKnown RBP11.54□□□□□ -0.56
LDB3-201ENST00000263066 CFTRP13569 1480 aa11.53□□□□□ -0.56
LDB3-201ENST00000263066 ZBTB47Q9UFB7 747 aaPredicted RBP11.52□□□□□ -0.56
LDB3-201ENST00000263066 WDR97A6NE52 1622 aa11.52□□□□□ -0.57
LDB3-201ENST00000263066 NPM2Q86SE8 214 aaKnown RBP11.51□□□□□ -0.57
LDB3-201ENST00000263066 ZNF326Q5BKZ1 582 aaKnown RBP11.5□□□□□ -0.57
LDB3-201ENST00000263066 NEFMP07197 916 aa11.49□□□□□ -0.57
LDB3-201ENST00000263066 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.49□□□□□ -0.57
LDB3-201ENST00000263066 CLIP1P30622 1438 aa11.48□□□□□ -0.57
LDB3-201ENST00000263066 KIF21AQ7Z4S6 1674 aa11.46□□□□□ -0.57
LDB3-201ENST00000263066 JPH4Q96JJ6 628 aa11.46□□□□□ -0.58
LDB3-201ENST00000263066 FGD5Q6ZNL6 1462 aa11.45□□□□□ -0.58
LDB3-201ENST00000263066 OSCARQ8IYS5 282 aa11.44□□□□□ -0.58
LDB3-201ENST00000263066 PLEKHD1A6NEE1 506 aa11.43□□□□□ -0.58
LDB3-201ENST00000263066 LAS1LQ9Y4W2 734 aaKnown RBP11.43□□□□□ -0.58
LDB3-201ENST00000263066 FANCIQ9NVI1 1328 aa11.43□□□□□ -0.58
LDB3-201ENST00000263066 MTUS2Q5JR59 1369 aa11.42□□□□□ -0.58
LDB3-201ENST00000263066 RRP7BPQ9NSQ0 103 aa11.41□□□□□ -0.58
LDB3-201ENST00000263066 CEP162Q5TB80 1403 aa11.41□□□□□ -0.58
LDB3-201ENST00000263066 MLECQ14165 292 aa11.41□□□□□ -0.58
LDB3-201ENST00000263066 CHGAP10645 457 aaKnown RBP11.41□□□□□ -0.58
LDB3-201ENST00000263066 ZMYND15Q9H091 742 aa11.4□□□□□ -0.58
LDB3-201ENST00000263066 KIF21BO75037 1637 aa11.4□□□□□ -0.58
LDB3-201ENST00000263066 LRRIQ1Q96JM4 1722 aa11.38□□□□□ -0.59
LDB3-201ENST00000263066 NAP1L5Q96NT1 182 aaPredicted RBP11.37□□□□□ -0.59
LDB3-201ENST00000263066 KANK4Q5T7N3 995 aaPredicted RBP11.37□□□□□ -0.59
LDB3-201ENST00000263066 RAPGEF2Q9Y4G8 1499 aa11.37□□□□□ -0.59
LDB3-201ENST00000263066 ARID4BQ4LE39 1312 aaPredicted RBP11.37□□□□□ -0.59
LDB3-201ENST00000263066 GOLGA3Q08378 1498 aa11.37□□□□□ -0.59
LDB3-201ENST00000263066 SLC4A1APQ9BWU0 796 aaKnown RBP11.35□□□□□ -0.59
LDB3-201ENST00000263066 ARXQ96QS3 562 aa11.35□□□□□ -0.59
LDB3-201ENST00000263066 RSPH6AQ9H0K4 717 aa11.35□□□□□ -0.59
LDB3-201ENST00000263066 IGF1RP08069 1367 aa11.34□□□□□ -0.59
LDB3-201ENST00000263066 FHOD3Q2V2M9 1422 aa11.34□□□□□ -0.59
LDB3-201ENST00000263066 PDE4CQ08493 712 aa11.34□□□□□ -0.59
LDB3-201ENST00000263066 ESF1Q9H501 851 aaKnown RBP11.34□□□□□ -0.59
LDB3-201ENST00000263066 GAPVD1Q14C86 1478 aa11.33□□□□□ -0.6
LDB3-201ENST00000263066 CFDP1Q9UEE9 299 aaPredicted RBP11.33□□□□□ -0.6
LDB3-201ENST00000263066 BRPF3Q9ULD4 1205 aa11.33□□□□□ -0.6
LDB3-201ENST00000263066 URB2Q14146 1524 aaKnown RBP11.32□□□□□ -0.6
LDB3-201ENST00000263066 PRXQ9BXM0 1461 aa11.32□□□□□ -0.6
LDB3-201ENST00000263066 HSP90AA2PQ14568 343 aaPredicted RBP11.32□□□□□ -0.6
LDB3-201ENST00000263066 TARBP1Q13395 1621 aaKnown RBP11.31□□□□□ -0.6
LDB3-201ENST00000263066 DDX10Q13206 875 aaKnown RBP11.31□□□□□ -0.6
LDB3-201ENST00000263066 PAK3O75914 559 aaPredicted RBP11.3□□□□□ -0.6
LDB3-201ENST00000263066 TSPY4P0CV99 314 aa11.3□□□□□ -0.6
LDB3-201ENST00000263066 TSPY10P0CW01 314 aa11.3□□□□□ -0.6
LDB3-201ENST00000263066 ZNF608Q9ULD9 1512 aaPredicted RBP11.3□□□□□ -0.6
LDB3-201ENST00000263066 TOPBP1Q92547 1522 aa11.29□□□□□ -0.6
LDB3-201ENST00000263066 ANP32CO43423 234 aa11.29□□□□□ -0.6
LDB3-201ENST00000263066 POLA1P09884 1462 aaPredicted RBP11.29□□□□□ -0.6
LDB3-201ENST00000263066 HNRNPUQ00839 825 aaKnown RBP eCLIP11.29□□□□□ -0.6
LDB3-201ENST00000263066 B4GALNT3Q6L9W6 998 aa11.28□□□□□ -0.6
LDB3-201ENST00000263066 ABCA5Q8WWZ7 1642 aa11.27□□□□□ -0.6
LDB3-201ENST00000263066 TNIKQ9UKE5 1360 aa11.27□□□□□ -0.61
LDB3-201ENST00000263066 MRC2Q9UBG0 1479 aa11.27□□□□□ -0.61
LDB3-201ENST00000263066 EEA1Q15075 1411 aa11.26□□□□□ -0.61
LDB3-201ENST00000263066 HSP90AA1P07900 732 aaKnown RBP11.26□□□□□ -0.61
LDB3-201ENST00000263066 STAG3Q9UJ98 1225 aa11.25□□□□□ -0.61
LDB3-201ENST00000263066 HIRIP3Q9BW71 556 aaPredicted RBP11.24□□□□□ -0.61
LDB3-201ENST00000263066 KDM2AQ9Y2K7 1162 aa11.24□□□□□ -0.61
LDB3-201ENST00000263066 AMER1Q5JTC6 1135 aaPredicted RBP11.23□□□□□ -0.61
LDB3-201ENST00000263066 RGL3Q3MIN7 710 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms