RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ERICH3Q5RHP9 1530 aa14.99□□□□□ -0.01
LIG3-201ENST00000262327 MIER1Q8N108 512 aa14.98□□□□□ -0.01
LIG3-201ENST00000262327 IFT140Q96RY7 1462 aa14.98□□□□□ -0.01
LIG3-201ENST00000262327 ABCA5Q8WWZ7 1642 aa14.96□□□□□ -0.01
LIG3-201ENST00000262327 RAPGEF2Q9Y4G8 1499 aa14.95□□□□□ -0.02
LIG3-201ENST00000262327 GAPVD1Q14C86 1478 aa14.93□□□□□ -0.02
LIG3-201ENST00000262327 CARMIL1Q5VZK9 1371 aa14.92□□□□□ -0.02
LIG3-201ENST00000262327 TDRD9Q8NDG6 1382 aaKnown RBP14.91□□□□□ -0.02
LIG3-201ENST00000262327 CUL7Q14999 1698 aa14.91□□□□□ -0.02
LIG3-201ENST00000262327 VPS8Q8N3P4 1428 aa14.88□□□□□ -0.03
LIG3-201ENST00000262327 GRIN2BQ13224 1484 aa14.84□□□□□ -0.03
LIG3-201ENST00000262327 AQRO60306 1485 aaKnown RBP eCLIP14.83□□□□□ -0.031e-7■■■■■ 41.1
LIG3-201ENST00000262327 PBRM1Q86U86 1689 aa14.83□□□□□ -0.04
LIG3-201ENST00000262327 KANK4Q5T7N3 995 aaPredicted RBP14.83□□□□□ -0.04
LIG3-201ENST00000262327 ZNF608Q9ULD9 1512 aaPredicted RBP14.83□□□□□ -0.04
LIG3-201ENST00000262327 ITGAEP38570 1179 aa14.81□□□□□ -0.04
LIG3-201ENST00000262327 EIF4G3O43432 1585 aaKnown RBP14.8□□□□□ -0.04
LIG3-201ENST00000262327 FHAD1B1AJZ9 1412 aa14.79□□□□□ -0.04
LIG3-201ENST00000262327 ADAMTS12P58397 1594 aa14.77□□□□□ -0.05
LIG3-201ENST00000262327 MAGI1Q96QZ7 1491 aaPredicted RBP14.73□□□□□ -0.05
LIG3-201ENST00000262327 SNAPC4Q5SXM2 1469 aa14.71□□□□□ -0.05
LIG3-201ENST00000262327 DHX57Q6P158 1386 aaKnown RBP14.7□□□□□ -0.06
LIG3-201ENST00000262327 CTTNBP2Q8WZ74 1663 aa14.7□□□□□ -0.06
LIG3-201ENST00000262327 ARAP1Q96P48 1450 aa14.69□□□□□ -0.06
LIG3-201ENST00000262327 BCL11AQ9H165 835 aa14.69□□□□□ -0.06
LIG3-201ENST00000262327 SYNJ2O15056 1496 aa14.67□□□□□ -0.06
LIG3-201ENST00000262327 ARHGAP35Q9NRY4 1499 aa14.65□□□□□ -0.06
LIG3-201ENST00000262327 GRIN2AQ12879 1464 aa14.64□□□□□ -0.07
LIG3-201ENST00000262327 EFCAB5A4FU69 1503 aa14.63□□□□□ -0.07
LIG3-201ENST00000262327 CHMP7Q8WUX9 453 aaPredicted RBP14.6□□□□□ -0.07
LIG3-201ENST00000262327 ATP1B4Q9UN42 357 aaPredicted RBP14.6□□□□□ -0.07
LIG3-201ENST00000262327 KIAA0586Q9BVV6 1533 aa14.59□□□□□ -0.07
LIG3-201ENST00000262327 P3H3Q8IVL6 736 aa14.59□□□□□ -0.07
LIG3-201ENST00000262327 IQGAP2Q13576 1575 aa14.58□□□□□ -0.07
LIG3-201ENST00000262327 PRKCSHP14314 528 aaPredicted RBP14.57□□□□□ -0.08
LIG3-201ENST00000262327 KCNH8Q96L42 1107 aa14.57□□□□□ -0.08
LIG3-201ENST00000262327 SAMD9Q5K651 1589 aa14.56□□□□□ -0.08
LIG3-201ENST00000262327 NUP160Q12769 1436 aa14.56□□□□□ -0.08
LIG3-201ENST00000262327 CCNB3Q8WWL7 1395 aa14.56□□□□□ -0.08
LIG3-201ENST00000262327 UGGT2Q9NYU1 1516 aa14.54□□□□□ -0.08
LIG3-201ENST00000262327 CLSPNQ9HAW4 1339 aa14.54□□□□□ -0.08
LIG3-201ENST00000262327 CEP170Q5SW79 1584 aa14.53□□□□□ -0.08
LIG3-201ENST00000262327 FAM50AQ14320 339 aaKnown RBP14.52□□□□□ -0.08
LIG3-201ENST00000262327 FBLN2P98095 1184 aa14.52□□□□□ -0.08
LIG3-201ENST00000262327 RRBP1Q9P2E9 1410 aaKnown RBP14.52□□□□□ -0.08
LIG3-201ENST00000262327 SIN3AQ96ST3 1273 aa14.5□□□□□ -0.09
LIG3-201ENST00000262327 HIRIP3Q9BW71 556 aaPredicted RBP14.5□□□□□ -0.09
LIG3-201ENST00000262327 RAB3GAP2Q9H2M9 1393 aa14.49□□□□□ -0.09
LIG3-201ENST00000262327 SUPT16HQ9Y5B9 1047 aaKnown RBP14.49□□□□□ -0.09
LIG3-201ENST00000262327 FHOD3Q2V2M9 1422 aa14.49□□□□□ -0.09
LIG3-201ENST00000262327 FMN1Q68DA7 1419 aa14.49□□□□□ -0.09
LIG3-201ENST00000262327 CHD1O14646 1710 aa14.47□□□□□ -0.09
LIG3-201ENST00000262327 MAP3K1Q13233 1512 aa14.46□□□□□ -0.09
LIG3-201ENST00000262327 CASKIN1Q8WXD9 1431 aa14.45□□□□□ -0.1
LIG3-201ENST00000262327 DDX10Q13206 875 aaKnown RBP14.45□□□□□ -0.1
LIG3-201ENST00000262327 FYCO1Q9BQS8 1478 aa14.44□□□□□ -0.1
LIG3-201ENST00000262327 DISP1Q96F81 1524 aa14.44□□□□□ -0.1
LIG3-201ENST00000262327 KIAA0556O60303 1618 aa14.43□□□□□ -0.1
LIG3-201ENST00000262327 BCANQ96GW7 911 aa14.43□□□□□ -0.1
LIG3-201ENST00000262327 PCF11O94913 1555 aaKnown RBP14.42□□□□□ -0.1
LIG3-201ENST00000262327 JPH4Q96JJ6 628 aa14.42□□□□□ -0.1
LIG3-201ENST00000262327 PHLDB1Q86UU1 1377 aa14.42□□□□□ -0.1
LIG3-201ENST00000262327 CARMIL2Q6F5E8 1435 aa14.41□□□□□ -0.1
LIG3-201ENST00000262327 TIAM1Q13009 1591 aa14.38□□□□□ -0.11
LIG3-201ENST00000262327 MAPKBP1O60336 1514 aa14.38□□□□□ -0.11
LIG3-201ENST00000262327 SETD5Q9C0A6 1442 aa14.37□□□□□ -0.11
LIG3-201ENST00000262327 SHROOM2Q13796 1616 aa14.37□□□□□ -0.11
LIG3-201ENST00000262327 CFAP43Q8NDM7 1665 aa14.36□□□□□ -0.11
LIG3-201ENST00000262327 CLASP1Q7Z460 1538 aa14.36□□□□□ -0.11
LIG3-201ENST00000262327 LRRC9Q6ZRR7 1453 aa14.34□□□□□ -0.11
LIG3-201ENST00000262327 HECW1Q76N89 1606 aa14.33□□□□□ -0.11
LIG3-201ENST00000262327 PRG4Q92954 1404 aaPredicted RBP14.33□□□□□ -0.12
LIG3-201ENST00000262327 CCDC18Q5T9S5 1454 aa14.32□□□□□ -0.12
LIG3-201ENST00000262327 TRIM52Q96A61 297 aa14.3□□□□□ -0.12
LIG3-201ENST00000262327 TSHZ2Q9NRE2 1034 aa14.3□□□□□ -0.12
LIG3-201ENST00000262327 RAPGEF6Q8TEU7 1601 aa14.29□□□□□ -0.12
LIG3-201ENST00000262327 FKBP8Q14318 412 aa14.29□□□□□ -0.12
LIG3-201ENST00000262327 LRRIQ1Q96JM4 1722 aa14.27□□□□□ -0.13
LIG3-201ENST00000262327 EPRSP07814 1512 aaKnown RBP14.27□□□□□ -0.13
LIG3-201ENST00000262327 ANP32EQ9BTT0 268 aa14.26□□□□□ -0.13
LIG3-201ENST00000262327 PTPRGP23470 1445 aa14.25□□□□□ -0.13
LIG3-201ENST00000262327 ABCA8O94911 1581 aa14.25□□□□□ -0.13
LIG3-201ENST00000262327 NUP153P49790 1475 aaKnown RBP14.24□□□□□ -0.13
LIG3-201ENST00000262327 PPP1R15AO75807 674 aaPredicted RBP14.24□□□□□ -0.13
LIG3-201ENST00000262327 OSCARQ8IYS5 282 aa14.24□□□□□ -0.13
LIG3-201ENST00000262327 EHBP1L1Q8N3D4 1523 aa14.23□□□□□ -0.13
LIG3-201ENST00000262327 PLB1Q6P1J6 1458 aa14.23□□□□□ -0.13
LIG3-201ENST00000262327 MTUS2Q5JR59 1369 aa14.22□□□□□ -0.13
LIG3-201ENST00000262327 ERCC6L2Q5T890 1561 aa14.19□□□□□ -0.14
LIG3-201ENST00000262327 ANP32CO43423 234 aa14.19□□□□□ -0.14
LIG3-201ENST00000262327 CDK13Q14004 1512 aaKnown RBP14.19□□□□□ -0.14
LIG3-201ENST00000262327 ARID3CA6NKF2 412 aa14.18□□□□□ -0.14
LIG3-201ENST00000262327 CDK11AQ9UQ88 783 aaPredicted RBP14.18□□□□□ -0.14
LIG3-201ENST00000262327 CHIC2Q9UKJ5 165 aa14.18□□□□□ -0.14
LIG3-201ENST00000262327 TONSLQ96HA7 1378 aa14.18□□□□□ -0.14
LIG3-201ENST00000262327 UACAQ9BZF9 1416 aa14.18□□□□□ -0.14
LIG3-201ENST00000262327 SUPT6HQ7KZ85 1726 aaKnown RBP14.17□□□□□ -0.14
LIG3-201ENST00000262327 MAGI3Q5TCQ9 1506 aa14.17□□□□□ -0.14
LIG3-201ENST00000262327 ERICH6Q7L0X2 663 aa14.15□□□□□ -0.14
LIG3-201ENST00000262327 ARHGEF11O15085 1522 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms