RNA–Protein interactions for RNA: ENST00000261415.11

COL4A3BP-201, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 1 (best) BASIC

Gene COL4A3BP, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-201ENST00000261415 PPARGC1BQ86YN6 1023 aaKnown RBP29.72■■■□□ 2.35
COL4A3BP-201ENST00000261415 GRIN2AQ12879 1464 aa29.71■■■□□ 2.35
COL4A3BP-201ENST00000261415 CHD1O14646 1710 aa29.68■■■□□ 2.34
COL4A3BP-201ENST00000261415 CLIP1P30622 1438 aa29.62■■■□□ 2.33
COL4A3BP-201ENST00000261415 CHMP7Q8WUX9 453 aaPredicted RBP29.62■■■□□ 2.33
COL4A3BP-201ENST00000261415 FBLN2P98095 1184 aa29.57■■■□□ 2.32
COL4A3BP-201ENST00000261415 PCGF6Q9BYE7 350 aa29.57■■■□□ 2.32
COL4A3BP-201ENST00000261415 CEP170Q5SW79 1584 aa29.57■■■□□ 2.32
COL4A3BP-201ENST00000261415 RANGAP1P46060 587 aaPredicted RBP29.56■■■□□ 2.32
COL4A3BP-201ENST00000261415 IQGAP2Q13576 1575 aa29.54■■■□□ 2.32
COL4A3BP-201ENST00000261415 NUP160Q12769 1436 aa29.5■■■□□ 2.31
COL4A3BP-201ENST00000261415 ARHGAP35Q9NRY4 1499 aa29.47■■■□□ 2.31
COL4A3BP-201ENST00000261415 KIAA0586Q9BVV6 1533 aa29.47■■■□□ 2.31
COL4A3BP-201ENST00000261415 EFCAB5A4FU69 1503 aa29.44■■■□□ 2.3
COL4A3BP-201ENST00000261415 SAMD9Q5K651 1589 aa29.42■■■□□ 2.3
COL4A3BP-201ENST00000261415 ARAP1Q96P48 1450 aa29.42■■■□□ 2.3
COL4A3BP-201ENST00000261415 UGGT2Q9NYU1 1516 aa29.36■■■□□ 2.29
COL4A3BP-201ENST00000261415 SCAF1Q9H7N4 1312 aaKnown RBP29.36■■■□□ 2.29
COL4A3BP-201ENST00000261415 VPS8Q8N3P4 1428 aa29.32■■■□□ 2.28
COL4A3BP-201ENST00000261415 FHOD3Q2V2M9 1422 aa29.27■■■□□ 2.28
COL4A3BP-201ENST00000261415 KIAA0556O60303 1618 aa29.26■■■□□ 2.27
COL4A3BP-201ENST00000261415 P3H3Q8IVL6 736 aa29.25■■■□□ 2.27
COL4A3BP-201ENST00000261415 CLASP1Q7Z460 1538 aa29.25■■■□□ 2.27
COL4A3BP-201ENST00000261415 DISP1Q96F81 1524 aa29.23■■■□□ 2.27
COL4A3BP-201ENST00000261415 SHROOM2Q13796 1616 aa29.23■■■□□ 2.27
COL4A3BP-201ENST00000261415 JPH4Q96JJ6 628 aa29.19■■■□□ 2.26
COL4A3BP-201ENST00000261415 PCF11O94913 1555 aaKnown RBP29.14■■■□□ 2.25
COL4A3BP-201ENST00000261415 FMN1Q68DA7 1419 aa29.12■■■□□ 2.25
COL4A3BP-201ENST00000261415 CARMIL2Q6F5E8 1435 aa29.11■■■□□ 2.25
COL4A3BP-201ENST00000261415 PRG4Q92954 1404 aaPredicted RBP29.07■■■□□ 2.24
COL4A3BP-201ENST00000261415 FYCO1Q9BQS8 1478 aa29.03■■■□□ 2.24
COL4A3BP-201ENST00000261415 OSCARQ8IYS5 282 aa29.03■■■□□ 2.24
COL4A3BP-201ENST00000261415 CASKIN1Q8WXD9 1431 aa29.02■■■□□ 2.24
COL4A3BP-201ENST00000261415 ERCC6L2Q5T890 1561 aa29.01■■■□□ 2.23
COL4A3BP-201ENST00000261415 LRRIQ1Q96JM4 1722 aa29■■■□□ 2.23
COL4A3BP-201ENST00000261415 CFAP43Q8NDM7 1665 aa28.96■■■□□ 2.23
COL4A3BP-201ENST00000261415 ZEB1P37275 1124 aaPredicted RBP28.94■■■□□ 2.22
COL4A3BP-201ENST00000261415 HECW1Q76N89 1606 aa28.94■■■□□ 2.22
COL4A3BP-201ENST00000261415 APLP2Q06481 763 aa28.94■■■□□ 2.22
COL4A3BP-201ENST00000261415 RAPGEF6Q8TEU7 1601 aa28.93■■■□□ 2.22
COL4A3BP-201ENST00000261415 TIAM1Q13009 1591 aa28.92■■■□□ 2.22
COL4A3BP-201ENST00000261415 TTBK1Q5TCY1 1321 aaPredicted RBP28.92■■■□□ 2.22
COL4A3BP-201ENST00000261415 MAP3K1Q13233 1512 aa28.9■■■□□ 2.22
COL4A3BP-201ENST00000261415 ATP1B4Q9UN42 357 aaPredicted RBP28.87■■■□□ 2.21
COL4A3BP-201ENST00000261415 PLB1Q6P1J6 1458 aa28.84■■■□□ 2.21
COL4A3BP-201ENST00000261415 ABCA8O94911 1581 aa28.84■■■□□ 2.21
COL4A3BP-201ENST00000261415 PTPRGP23470 1445 aa28.83■■■□□ 2.21
COL4A3BP-201ENST00000261415 CCDC18Q5T9S5 1454 aa28.8■■■□□ 2.2
COL4A3BP-201ENST00000261415 NUP153P49790 1475 aaKnown RBP28.8■■■□□ 2.2
COL4A3BP-201ENST00000261415 EPRSP07814 1512 aaKnown RBP28.78■■■□□ 2.2
COL4A3BP-201ENST00000261415 KANK4Q5T7N3 995 aaPredicted RBP28.75■■■□□ 2.19
COL4A3BP-201ENST00000261415 CDK13Q14004 1512 aaKnown RBP28.74■■■□□ 2.19
COL4A3BP-201ENST00000261415 LRRC9Q6ZRR7 1453 aa28.74■■■□□ 2.19
COL4A3BP-201ENST00000261415 TRIM26Q12899 539 aaPredicted RBP28.71■■■□□ 2.19
COL4A3BP-201ENST00000261415 UACAQ9BZF9 1416 aa28.69■■■□□ 2.18
COL4A3BP-201ENST00000261415 ABCC2Q92887 1545 aa28.67■■■□□ 2.18
COL4A3BP-201ENST00000261415 ARID3CA6NKF2 412 aa28.65■■■□□ 2.18
COL4A3BP-201ENST00000261415 ARHGEF11O15085 1522 aa28.65■■■□□ 2.18
COL4A3BP-201ENST00000261415 MAGI3Q5TCQ9 1506 aa28.64■■■□□ 2.18
COL4A3BP-201ENST00000261415 EHBP1L1Q8N3D4 1523 aa28.63■■■□□ 2.17
COL4A3BP-201ENST00000261415 MTUS2Q5JR59 1369 aa28.6■■■□□ 2.17
COL4A3BP-201ENST00000261415 ACIN1Q9UKV3 1341 aaKnown RBP28.59■■■□□ 2.17
COL4A3BP-201ENST00000261415 UHRF1BP1LA0JNW5 1464 aa28.59■■■□□ 2.17
COL4A3BP-201ENST00000261415 RIMBP3CA6NJZ7 1639 aa28.58■■■□□ 2.17
COL4A3BP-201ENST00000261415 RIMBP3BA6NNM3 1639 aa28.58■■■□□ 2.17
COL4A3BP-201ENST00000261415 ATP10BO94823 1461 aa28.58■■■□□ 2.17
COL4A3BP-201ENST00000261415 SUPT6HQ7KZ85 1726 aaKnown RBP28.58■■■□□ 2.17
COL4A3BP-201ENST00000261415 RIMBP3Q9UFD9 1639 aa28.58■■■□□ 2.17
COL4A3BP-201ENST00000261415 ADCY10Q96PN6 1610 aa28.58■■■□□ 2.17
COL4A3BP-201ENST00000261415 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.54■■■□□ 2.16
COL4A3BP-201ENST00000261415 HNRNPUL2Q1KMD3 747 aaKnown RBP28.54■■■□□ 2.16
COL4A3BP-201ENST00000261415 ZCCHC11Q5TAX3 1644 aaKnown RBP28.53■■■□□ 2.16
COL4A3BP-201ENST00000261415 KDM5BQ9UGL1 1544 aa28.48■■■□□ 2.15
COL4A3BP-201ENST00000261415 CDK11AQ9UQ88 783 aaPredicted RBP28.48■■■□□ 2.15
COL4A3BP-201ENST00000261415 NCOA2Q15596 1464 aa28.46■■■□□ 2.15
COL4A3BP-201ENST00000261415 TROQ12816 1431 aaPredicted RBP28.45■■■□□ 2.15
COL4A3BP-201ENST00000261415 PHLDB1Q86UU1 1377 aa28.43■■■□□ 2.14
COL4A3BP-201ENST00000261415 KIF14Q15058 1648 aa28.42■■■□□ 2.14
COL4A3BP-201ENST00000261415 RRBP1Q9P2E9 1410 aaKnown RBP28.38■■■□□ 2.13
COL4A3BP-201ENST00000261415 PLEKHD1A6NEE1 506 aa28.38■■■□□ 2.13
COL4A3BP-201ENST00000261415 MYOM3Q5VTT5 1437 aa28.31■■■□□ 2.12
COL4A3BP-201ENST00000261415 NEUROD1Q13562 356 aa28.31■■■□□ 2.12
COL4A3BP-201ENST00000261415 ITSN2Q9NZM3 1697 aa28.3■■■□□ 2.12
COL4A3BP-201ENST00000261415 CCNB3Q8WWL7 1395 aa28.29■■■□□ 2.12
COL4A3BP-201ENST00000261415 CDC42BPAQ5VT25 1732 aa28.28■■■□□ 2.12
COL4A3BP-201ENST00000261415 CYB5RLQ6IPT4 315 aa28.28■■■□□ 2.12
COL4A3BP-201ENST00000261415 FGD6Q6ZV73 1430 aa28.27■■■□□ 2.12
COL4A3BP-201ENST00000261415 GTF3C3Q9Y5Q9 886 aa28.27■■■□□ 2.12
COL4A3BP-201ENST00000261415 CENPBP07199 599 aaPredicted RBP28.26■■■□□ 2.11
COL4A3BP-201ENST00000261415 ABCC10Q5T3U5 1492 aa28.25■■■□□ 2.11
COL4A3BP-201ENST00000261415 PTPN23Q9H3S7 1636 aa28.23■■■□□ 2.11
COL4A3BP-201ENST00000261415 WDR7Q9Y4E6 1490 aa28.22■■■□□ 2.11
COL4A3BP-201ENST00000261415 TTC37Q6PGP7 1564 aa28.21■■■□□ 2.11
COL4A3BP-201ENST00000261415 NPM1P06748 294 aaKnown RBP eCLIP28.2■■■□□ 2.11
COL4A3BP-201ENST00000261415 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.2■■■□□ 2.11e-6■■■■■ 42.9
COL4A3BP-201ENST00000261415 ASXL2Q76L83 1435 aa28.19■■■□□ 2.1
COL4A3BP-201ENST00000261415 MYO5CQ9NQX4 1742 aa28.18■■■□□ 2.1
COL4A3BP-201ENST00000261415 GPATCH8Q9UKJ3 1502 aaKnown RBP28.18■■■□□ 2.1
COL4A3BP-201ENST00000261415 MIA2Q96PC5 1412 aa28.18■■■□□ 2.1
COL4A3BP-201ENST00000261415 PREX2Q70Z35 1606 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms