RNA–Protein interactions for RNA: ENST00000258607.9

CKAP2-201, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CKAP2, Length 3,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-201ENST00000258607 FOXD1Q16676 465 aa13.27□□□□□ -0.29
CKAP2-201ENST00000258607 ZNF326Q5BKZ1 582 aaKnown RBP13.26□□□□□ -0.29
CKAP2-201ENST00000258607 CHMP7Q8WUX9 453 aaPredicted RBP13.25□□□□□ -0.29
CKAP2-201ENST00000258607 SCAF1Q9H7N4 1312 aaKnown RBP13.25□□□□□ -0.29
CKAP2-201ENST00000258607 MTUS2Q5JR59 1369 aa13.23□□□□□ -0.29
CKAP2-201ENST00000258607 GTF3C3Q9Y5Q9 886 aa13.23□□□□□ -0.29
CKAP2-201ENST00000258607 ARHGAP35Q9NRY4 1499 aa13.22□□□□□ -0.29
CKAP2-201ENST00000258607 HMGXB3Q12766 1538 aa13.22□□□□□ -0.29
CKAP2-201ENST00000258607 PRXQ9BXM0 1461 aa13.21□□□□□ -0.29
CKAP2-201ENST00000258607 ERCC6Q03468 1493 aa13.21□□□□□ -0.3
CKAP2-201ENST00000258607 PDS5BQ9NTI5 1447 aa13.2□□□□□ -0.3
CKAP2-201ENST00000258607 POLA1P09884 1462 aaPredicted RBP13.2□□□□□ -0.3
CKAP2-201ENST00000258607 DDX10Q13206 875 aaKnown RBP13.19□□□□□ -0.3
CKAP2-201ENST00000258607 SENP3Q9H4L4 574 aaPredicted RBP13.19□□□□□ -0.3
CKAP2-201ENST00000258607 CCNB3Q8WWL7 1395 aa13.19□□□□□ -0.3
CKAP2-201ENST00000258607 TOPBP1Q92547 1522 aa13.16□□□□□ -0.3
CKAP2-201ENST00000258607 PHLDB1Q86UU1 1377 aa13.16□□□□□ -0.3
CKAP2-201ENST00000258607 KCNH8Q96L42 1107 aa13.15□□□□□ -0.3
CKAP2-201ENST00000258607 MYT1LQ9UL68 1186 aa13.14□□□□□ -0.31
CKAP2-201ENST00000258607 CENPBP07199 599 aaPredicted RBP13.14□□□□□ -0.31
CKAP2-201ENST00000258607 RAB3GAP2Q9H2M9 1393 aa13.13□□□□□ -0.31
CKAP2-201ENST00000258607 ZNF644Q9H582 1327 aaPredicted RBP13.12□□□□□ -0.31
CKAP2-201ENST00000258607 URB2Q14146 1524 aaKnown RBP13.12□□□□□ -0.31
CKAP2-201ENST00000258607 BCANQ96GW7 911 aa13.11□□□□□ -0.31
CKAP2-201ENST00000258607 GAPVD1Q14C86 1478 aa13.09□□□□□ -0.31
CKAP2-201ENST00000258607 DHX57Q6P158 1386 aaKnown RBP13.08□□□□□ -0.32
CKAP2-201ENST00000258607 ACIN1Q9UKV3 1341 aaKnown RBP13.08□□□□□ -0.32
CKAP2-201ENST00000258607 ZNF608Q9ULD9 1512 aaPredicted RBP13.07□□□□□ -0.32
CKAP2-201ENST00000258607 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.05□□□□□ -0.323e-7■■■■■ 27.3
CKAP2-201ENST00000258607 BIVM-ERCC5R4GMW8 1640 aa13.05□□□□□ -0.32
CKAP2-201ENST00000258607 KDM2AQ9Y2K7 1162 aa13.01□□□□□ -0.33
CKAP2-201ENST00000258607 ERICH3Q5RHP9 1530 aa12.97□□□□□ -0.33
CKAP2-201ENST00000258607 FHAD1B1AJZ9 1412 aa12.97□□□□□ -0.33
CKAP2-201ENST00000258607 TONSLQ96HA7 1378 aa12.96□□□□□ -0.33
CKAP2-201ENST00000258607 CFDP1Q9UEE9 299 aaPredicted RBP12.96□□□□□ -0.33
CKAP2-201ENST00000258607 JPH4Q96JJ6 628 aa12.96□□□□□ -0.34
CKAP2-201ENST00000258607 DNMBPQ6XZF7 1577 aa12.95□□□□□ -0.34
CKAP2-201ENST00000258607 LRRC9Q6ZRR7 1453 aa12.95□□□□□ -0.34
CKAP2-201ENST00000258607 SLC4A1APQ9BWU0 796 aaKnown RBP12.95□□□□□ -0.34
CKAP2-201ENST00000258607 PCF11O94913 1555 aaKnown RBP12.94□□□□□ -0.34
CKAP2-201ENST00000258607 SETD5Q9C0A6 1442 aa12.94□□□□□ -0.34
CKAP2-201ENST00000258607 RGL3Q3MIN7 710 aa12.94□□□□□ -0.34
CKAP2-201ENST00000258607 KIF21AQ7Z4S6 1674 aa12.93□□□□□ -0.34
CKAP2-201ENST00000258607 CDK13Q14004 1512 aaKnown RBP12.92□□□□□ -0.34
CKAP2-201ENST00000258607 ABCA10Q8WWZ4 1543 aa12.92□□□□□ -0.34
CKAP2-201ENST00000258607 HNRNPMP52272 730 aaKnown RBP eCLIP12.91□□□□□ -0.34
CKAP2-201ENST00000258607 IRX6P78412 446 aaPredicted RBP12.9□□□□□ -0.34
CKAP2-201ENST00000258607 CDK11AQ9UQ88 783 aaPredicted RBP12.88□□□□□ -0.35
CKAP2-201ENST00000258607 PLEKHD1A6NEE1 506 aa12.88□□□□□ -0.35
CKAP2-201ENST00000258607 FMN1Q68DA7 1419 aa12.87□□□□□ -0.35
CKAP2-201ENST00000258607 SNAPC4Q5SXM2 1469 aa12.87□□□□□ -0.35
CKAP2-201ENST00000258607 PRDM2Q13029 1718 aa12.87□□□□□ -0.35
CKAP2-201ENST00000258607 SALL2Q9Y467 1007 aaPredicted RBP12.86□□□□□ -0.35
CKAP2-201ENST00000258607 TIAM1Q13009 1591 aa12.86□□□□□ -0.35
CKAP2-201ENST00000258607 PTPRKQ15262 1439 aa12.85□□□□□ -0.35
CKAP2-201ENST00000258607 RRBP1Q9P2E9 1410 aaKnown RBP12.84□□□□□ -0.35
CKAP2-201ENST00000258607 PRG4Q92954 1404 aaPredicted RBP12.83□□□□□ -0.35
CKAP2-201ENST00000258607 FAM9BQ8IZU0 186 aa12.83□□□□□ -0.36
CKAP2-201ENST00000258607 FGD6Q6ZV73 1430 aa12.83□□□□□ -0.36
CKAP2-201ENST00000258607 NCOA2Q15596 1464 aa12.83□□□□□ -0.36
CKAP2-201ENST00000258607 LAMC3Q9Y6N6 1575 aa12.82□□□□□ -0.36
CKAP2-201ENST00000258607 MPHOSPH9Q99550 1183 aa12.82□□□□□ -0.36
CKAP2-201ENST00000258607 MRC2Q9UBG0 1479 aa12.82□□□□□ -0.36
CKAP2-201ENST00000258607 PLPPR3Q6T4P5 718 aa12.82□□□□□ -0.36
CKAP2-201ENST00000258607 L3MBTL2Q969R5 705 aa12.82□□□□□ -0.36
CKAP2-201ENST00000258607 PLB1Q6P1J6 1458 aa12.82□□□□□ -0.36
CKAP2-201ENST00000258607 ANP32CO43423 234 aa12.81□□□□□ -0.36
CKAP2-201ENST00000258607 CASKIN1Q8WXD9 1431 aa12.8□□□□□ -0.36
CKAP2-201ENST00000258607 PPP1R15AO75807 674 aaPredicted RBP12.8□□□□□ -0.36
CKAP2-201ENST00000258607 TSPY4P0CV99 314 aa12.79□□□□□ -0.36
CKAP2-201ENST00000258607 TSPY10P0CW01 314 aa12.79□□□□□ -0.36
CKAP2-201ENST00000258607 PKD2Q13563 968 aa12.78□□□□□ -0.36
CKAP2-201ENST00000258607 GRIN2BQ13224 1484 aa12.78□□□□□ -0.36
CKAP2-201ENST00000258607 CCDC18Q5T9S5 1454 aa12.77□□□□□ -0.37
CKAP2-201ENST00000258607 HSPA5P11021 654 aaKnown RBP12.77□□□□□ -0.37
CKAP2-201ENST00000258607 HNRNPUQ00839 825 aaKnown RBP eCLIP12.76□□□□□ -0.37
CKAP2-201ENST00000258607 CHGAP10645 457 aaKnown RBP12.76□□□□□ -0.37
CKAP2-201ENST00000258607 WDR97A6NE52 1622 aa12.75□□□□□ -0.37
CKAP2-201ENST00000258607 MYOM3Q5VTT5 1437 aa12.74□□□□□ -0.37
CKAP2-201ENST00000258607 FKBP8Q14318 412 aa12.73□□□□□ -0.37
CKAP2-201ENST00000258607 FYCO1Q9BQS8 1478 aa12.72□□□□□ -0.37
CKAP2-201ENST00000258607 DCAF11Q8TEB1 546 aa12.72□□□□□ -0.37
CKAP2-201ENST00000258607 THOC2Q8NI27 1593 aaKnown RBP12.72□□□□□ -0.37
CKAP2-201ENST00000258607 MAGI3Q5TCQ9 1506 aa12.7□□□□□ -0.38
CKAP2-201ENST00000258607 EPRSP07814 1512 aaKnown RBP12.7□□□□□ -0.38
CKAP2-201ENST00000258607 NBPF8Q3BBV2 869 aa12.69□□□□□ -0.38
CKAP2-201ENST00000258607 CCDC184Q52MB2 194 aa12.69□□□□□ -0.38
CKAP2-201ENST00000258607 NUTM2DQ5VT03 806 aaPredicted RBP12.69□□□□□ -0.38
CKAP2-201ENST00000258607 EIF4G2P78344 907 aaKnown RBP eCLIP12.69□□□□□ -0.38
CKAP2-201ENST00000258607 MAPKBP1O60336 1514 aa12.68□□□□□ -0.38
CKAP2-201ENST00000258607 C11orf95C9JLR9 678 aaPredicted RBP12.68□□□□□ -0.38
CKAP2-201ENST00000258607 NUP155O75694 1391 aa12.68□□□□□ -0.38
CKAP2-201ENST00000258607 IQGAP2Q13576 1575 aa12.67□□□□□ -0.38
CKAP2-201ENST00000258607 PTPRGP23470 1445 aa12.67□□□□□ -0.38
CKAP2-201ENST00000258607 NAIPQ13075 1403 aa12.67□□□□□ -0.38
CKAP2-201ENST00000258607 IFT140Q96RY7 1462 aa12.66□□□□□ -0.38
CKAP2-201ENST00000258607 AFAP1Q8N556 730 aa12.66□□□□□ -0.38
CKAP2-201ENST00000258607 GRIN2AQ12879 1464 aa12.66□□□□□ -0.38
CKAP2-201ENST00000258607 CLSPNQ9HAW4 1339 aa12.65□□□□□ -0.38
CKAP2-201ENST00000258607 MRS2Q9HD23 443 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms