RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PDS5BQ9NTI5 1447 aa20.34■□□□□ 0.85
SDC1-201ENST00000254351 TOP2BQ02880 1626 aa20.33■□□□□ 0.84
SDC1-201ENST00000254351 BIVM-ERCC5R4GMW8 1640 aa20.31■□□□□ 0.84
SDC1-201ENST00000254351 CUX1P39880 1505 aa20.31■□□□□ 0.84
SDC1-201ENST00000254351 ATP1B4Q9UN42 357 aaPredicted RBP20.27■□□□□ 0.83
SDC1-201ENST00000254351 KIF21BO75037 1637 aa20.25■□□□□ 0.83
SDC1-201ENST00000254351 ANP32CO43423 234 aa20.25■□□□□ 0.83
SDC1-201ENST00000254351 FAM50AQ14320 339 aaKnown RBP20.24■□□□□ 0.83
SDC1-201ENST00000254351 KIF21AQ7Z4S6 1674 aa20.22■□□□□ 0.83
SDC1-201ENST00000254351 HNRNPUQ00839 825 aaKnown RBP eCLIP20.19■□□□□ 0.82
SDC1-201ENST00000254351 DNMBPQ6XZF7 1577 aa20.19■□□□□ 0.82
SDC1-201ENST00000254351 RAB3GAP2Q9H2M9 1393 aa20.18■□□□□ 0.82
SDC1-201ENST00000254351 CDK11AQ9UQ88 783 aaPredicted RBP20.18■□□□□ 0.82
SDC1-201ENST00000254351 NBR1Q14596 966 aa20.17■□□□□ 0.82
SDC1-201ENST00000254351 TOPBP1Q92547 1522 aa20.16■□□□□ 0.82
SDC1-201ENST00000254351 URB2Q14146 1524 aaKnown RBP20.14■□□□□ 0.82
SDC1-201ENST00000254351 CCNB3Q8WWL7 1395 aa20.14■□□□□ 0.81
SDC1-201ENST00000254351 CNGB1Q14028 1251 aaPredicted RBP20.13■□□□□ 0.81
SDC1-201ENST00000254351 PPP1R15AO75807 674 aaPredicted RBP20.13■□□□□ 0.81
SDC1-201ENST00000254351 FGD5Q6ZNL6 1462 aa20.11■□□□□ 0.81
SDC1-201ENST00000254351 SENP3-EIF4A1A0A087X0R7 540 aa20.09■□□□□ 0.81
SDC1-201ENST00000254351 P3H3Q8IVL6 736 aa20.08■□□□□ 0.81
SDC1-201ENST00000254351 MRC2Q9UBG0 1479 aa20.08■□□□□ 0.81
SDC1-201ENST00000254351 WDR97A6NE52 1622 aa20.08■□□□□ 0.81
SDC1-201ENST00000254351 DEKP35659 375 aaKnown RBP20.07■□□□□ 0.8
SDC1-201ENST00000254351 ERCC6Q03468 1493 aa20.07■□□□□ 0.8
SDC1-201ENST00000254351 B4GALNT3Q6L9W6 998 aa20.05■□□□□ 0.8
SDC1-201ENST00000254351 POLA1P09884 1462 aaPredicted RBP20.05■□□□□ 0.8
SDC1-201ENST00000254351 ARAP1Q96P48 1450 aa20.04■□□□□ 0.8
SDC1-201ENST00000254351 WDR62O43379 1518 aa19.99■□□□□ 0.79
SDC1-201ENST00000254351 PRKCSHP14314 528 aaPredicted RBP19.98■□□□□ 0.79
SDC1-201ENST00000254351 KIF27Q86VH2 1401 aa19.98■□□□□ 0.79
SDC1-201ENST00000254351 MAPKBP1O60336 1514 aa19.97■□□□□ 0.79
SDC1-201ENST00000254351 RRBP1Q9P2E9 1410 aaKnown RBP19.97■□□□□ 0.79
SDC1-201ENST00000254351 FAM9BQ8IZU0 186 aa19.96■□□□□ 0.79
SDC1-201ENST00000254351 THOC2Q8NI27 1593 aaKnown RBP19.96■□□□□ 0.79
SDC1-201ENST00000254351 RAD54L2Q9Y4B4 1467 aa19.96■□□□□ 0.79
SDC1-201ENST00000254351 CCER2I3L3R5 266 aa19.96■□□□□ 0.79
SDC1-201ENST00000254351 FANCIQ9NVI1 1328 aa19.95■□□□□ 0.78
SDC1-201ENST00000254351 ABCA10Q8WWZ4 1543 aa19.95■□□□□ 0.78
SDC1-201ENST00000254351 CUX2O14529 1486 aa19.95■□□□□ 0.78
SDC1-201ENST00000254351 SETD5Q9C0A6 1442 aa19.91■□□□□ 0.78
SDC1-201ENST00000254351 ANO8Q9HCE9 1232 aaPredicted RBP19.91■□□□□ 0.78
SDC1-201ENST00000254351 PAK3O75914 559 aaPredicted RBP19.91■□□□□ 0.78
SDC1-201ENST00000254351 CCDC184Q52MB2 194 aa19.91■□□□□ 0.78
SDC1-201ENST00000254351 RTN4Q9NQC3 1192 aaKnown RBP19.9■□□□□ 0.78
SDC1-201ENST00000254351 TARBP1Q13395 1621 aaKnown RBP19.87■□□□□ 0.77
SDC1-201ENST00000254351 TONSLQ96HA7 1378 aa19.86■□□□□ 0.77
SDC1-201ENST00000254351 PHLDB1Q86UU1 1377 aa19.83■□□□□ 0.76
SDC1-201ENST00000254351 IFT140Q96RY7 1462 aa19.82■□□□□ 0.76
SDC1-201ENST00000254351 CCDC136Q96JN2 1154 aa19.82■□□□□ 0.76
SDC1-201ENST00000254351 PPP4R2Q9NY27 417 aa19.81■□□□□ 0.76
SDC1-201ENST00000254351 IGF1RP08069 1367 aa19.81■□□□□ 0.76
SDC1-201ENST00000254351 PRXQ9BXM0 1461 aa19.8■□□□□ 0.76
SDC1-201ENST00000254351 NOP58Q9Y2X3 529 aaKnown RBP19.8■□□□□ 0.76
SDC1-201ENST00000254351 ABCA5Q8WWZ7 1642 aa19.79■□□□□ 0.76
SDC1-201ENST00000254351 TDRD9Q8NDG6 1382 aaKnown RBP19.78■□□□□ 0.76
SDC1-201ENST00000254351 ARHGAP35Q9NRY4 1499 aa19.77■□□□□ 0.76
SDC1-201ENST00000254351 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
SDC1-201ENST00000254351 POLR3GLQ9BT43 218 aa19.76■□□□□ 0.75
SDC1-201ENST00000254351 ERICH3Q5RHP9 1530 aa19.75■□□□□ 0.75
SDC1-201ENST00000254351 NPM2Q86SE8 214 aaKnown RBP19.75■□□□□ 0.75
SDC1-201ENST00000254351 SALL2Q9Y467 1007 aaPredicted RBP19.75■□□□□ 0.75
SDC1-201ENST00000254351 MRS2Q9HD23 443 aa19.74■□□□□ 0.75
SDC1-201ENST00000254351 IL27Q8NEV9 243 aa19.71■□□□□ 0.75
SDC1-201ENST00000254351 CARMIL1Q5VZK9 1371 aa19.7■□□□□ 0.74
SDC1-201ENST00000254351 RTL5Q5HYW3 569 aaPredicted RBP19.7■□□□□ 0.74
SDC1-201ENST00000254351 HSPA5P11021 654 aaKnown RBP19.7■□□□□ 0.74
SDC1-201ENST00000254351 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.7■□□□□ 0.74
SDC1-201ENST00000254351 ZNF608Q9ULD9 1512 aaPredicted RBP19.69■□□□□ 0.74
SDC1-201ENST00000254351 AQRO60306 1485 aaKnown RBP eCLIP19.69■□□□□ 0.742e-7■■■■■ 33.9
SDC1-201ENST00000254351 WASHC2AQ641Q2 1341 aa19.69■□□□□ 0.74
SDC1-201ENST00000254351 CUL7Q14999 1698 aa19.68■□□□□ 0.74
SDC1-201ENST00000254351 CHIC2Q9UKJ5 165 aa19.67■□□□□ 0.74
SDC1-201ENST00000254351 PBRM1Q86U86 1689 aa19.64■□□□□ 0.74
SDC1-201ENST00000254351 GRIN2BQ13224 1484 aa19.63■□□□□ 0.73
SDC1-201ENST00000254351 FOXD1Q16676 465 aa19.63■□□□□ 0.73
SDC1-201ENST00000254351 LAS1LQ9Y4W2 734 aaKnown RBP19.63■□□□□ 0.73
SDC1-201ENST00000254351 EIF4G3O43432 1585 aaKnown RBP19.63■□□□□ 0.73
SDC1-201ENST00000254351 ANP32AP39687 249 aaKnown RBP19.62■□□□□ 0.73
SDC1-201ENST00000254351 RRP7BPQ9NSQ0 103 aa19.62■□□□□ 0.73
SDC1-201ENST00000254351 ZBTB47Q9UFB7 747 aaPredicted RBP19.61■□□□□ 0.73
SDC1-201ENST00000254351 TIMELESSQ9UNS1 1208 aa19.61■□□□□ 0.73
SDC1-201ENST00000254351 C11orf95C9JLR9 678 aaPredicted RBP19.6■□□□□ 0.73
SDC1-201ENST00000254351 MYT1LQ9UL68 1186 aa19.59■□□□□ 0.73
SDC1-201ENST00000254351 LRRC9Q6ZRR7 1453 aa19.59■□□□□ 0.73
SDC1-201ENST00000254351 AKNAQ7Z591 1439 aa19.55■□□□□ 0.72
SDC1-201ENST00000254351 FHAD1B1AJZ9 1412 aa19.55■□□□□ 0.72
SDC1-201ENST00000254351 ADAMTS12P58397 1594 aa19.55■□□□□ 0.72
SDC1-201ENST00000254351 EIF4G2P78344 907 aaKnown RBP eCLIP19.54■□□□□ 0.72
SDC1-201ENST00000254351 PRKRIP1Q9H875 184 aaPredicted RBP19.54■□□□□ 0.72
SDC1-201ENST00000254351 TIAM1Q13009 1591 aa19.53■□□□□ 0.72
SDC1-201ENST00000254351 ARID3CA6NKF2 412 aa19.53■□□□□ 0.72
SDC1-201ENST00000254351 IPO9Q96P70 1041 aaKnown RBP19.53■□□□□ 0.72
SDC1-201ENST00000254351 SNAPC4Q5SXM2 1469 aa19.51■□□□□ 0.71
SDC1-201ENST00000254351 FHOD3Q2V2M9 1422 aa19.5■□□□□ 0.71
SDC1-201ENST00000254351 MAGI1Q96QZ7 1491 aaPredicted RBP19.5■□□□□ 0.71
SDC1-201ENST00000254351 ZNF326Q5BKZ1 582 aaKnown RBP19.49■□□□□ 0.71
SDC1-201ENST00000254351 NEFMP07197 916 aa19.47■□□□□ 0.71
SDC1-201ENST00000254351 ERICH6BQ5W0A0 696 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms