RNA–Protein interactions for RNA: ENST00000222120.7

RAB3D-201, Transcript of RAB3D, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB3D, Length 4,273 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3D-201ENST00000222120 KIF21BO75037 1637 aa18.98■□□□□ 0.63
RAB3D-201ENST00000222120 DHX57Q6P158 1386 aaKnown RBP18.98■□□□□ 0.63
RAB3D-201ENST00000222120 HNRNPUQ00839 825 aaKnown RBP eCLIP18.94■□□□□ 0.62
RAB3D-201ENST00000222120 FHOD3Q2V2M9 1422 aa18.94■□□□□ 0.62
RAB3D-201ENST00000222120 IGF1RP08069 1367 aa18.94■□□□□ 0.62
RAB3D-201ENST00000222120 CDK11AQ9UQ88 783 aaPredicted RBP18.92■□□□□ 0.62
RAB3D-201ENST00000222120 FHAD1B1AJZ9 1412 aa18.92■□□□□ 0.62
RAB3D-201ENST00000222120 UNC13AQ9UPW8 1703 aa18.91■□□□□ 0.62
RAB3D-201ENST00000222120 SETD5Q9C0A6 1442 aa18.9■□□□□ 0.62
RAB3D-201ENST00000222120 NCAPD3P42695 1498 aa18.9■□□□□ 0.62
RAB3D-201ENST00000222120 ARAP1Q96P48 1450 aa18.89■□□□□ 0.61
RAB3D-201ENST00000222120 FAM9BQ8IZU0 186 aa18.89■□□□□ 0.61
RAB3D-201ENST00000222120 KCNH8Q96L42 1107 aa18.88■□□□□ 0.61
RAB3D-201ENST00000222120 EIF4G1Q04637 1599 aaKnown RBP18.88■□□□□ 0.61
RAB3D-201ENST00000222120 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
RAB3D-201ENST00000222120 IRX6P78412 446 aaPredicted RBP18.86■□□□□ 0.61
RAB3D-201ENST00000222120 SENP3-EIF4A1A0A087X0R7 540 aa18.85■□□□□ 0.61
RAB3D-201ENST00000222120 FOXD1Q16676 465 aa18.83■□□□□ 0.6
RAB3D-201ENST00000222120 SLC4A1APQ9BWU0 796 aaKnown RBP18.83■□□□□ 0.6
RAB3D-201ENST00000222120 FGD5Q6ZNL6 1462 aa18.83■□□□□ 0.6
RAB3D-201ENST00000222120 RAD54L2Q9Y4B4 1467 aa18.82■□□□□ 0.6
RAB3D-201ENST00000222120 PRXQ9BXM0 1461 aa18.8■□□□□ 0.6
RAB3D-201ENST00000222120 FANCD2Q9BXW9 1451 aa18.8■□□□□ 0.6
RAB3D-201ENST00000222120 CUX1P39880 1505 aa18.8■□□□□ 0.6
RAB3D-201ENST00000222120 KDM2AQ9Y2K7 1162 aa18.79■□□□□ 0.6
RAB3D-201ENST00000222120 ARHGAP35Q9NRY4 1499 aa18.79■□□□□ 0.6
RAB3D-201ENST00000222120 SUPT16HQ9Y5B9 1047 aaKnown RBP18.78■□□□□ 0.6
RAB3D-201ENST00000222120 TOP2BQ02880 1626 aa18.77■□□□□ 0.6
RAB3D-201ENST00000222120 CFTRP13569 1480 aa18.77■□□□□ 0.6
RAB3D-201ENST00000222120 EIF4G2P78344 907 aaKnown RBP eCLIP18.77■□□□□ 0.6
RAB3D-201ENST00000222120 PHLDB1Q86UU1 1377 aa18.74■□□□□ 0.59
RAB3D-201ENST00000222120 PPP1R15AO75807 674 aaPredicted RBP18.73■□□□□ 0.59
RAB3D-201ENST00000222120 MRS2Q9HD23 443 aa18.73■□□□□ 0.59
RAB3D-201ENST00000222120 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.59
RAB3D-201ENST00000222120 CFDP1Q9UEE9 299 aaPredicted RBP18.71■□□□□ 0.59
RAB3D-201ENST00000222120 SALL2Q9Y467 1007 aaPredicted RBP18.71■□□□□ 0.59
RAB3D-201ENST00000222120 NESP48681 1621 aa18.67■□□□□ 0.58
RAB3D-201ENST00000222120 FMN1Q68DA7 1419 aa18.67■□□□□ 0.58
RAB3D-201ENST00000222120 PEG3Q9GZU2 1588 aa18.67■□□□□ 0.58
RAB3D-201ENST00000222120 TSPY4P0CV99 314 aa18.67■□□□□ 0.58
RAB3D-201ENST00000222120 TSPY10P0CW01 314 aa18.67■□□□□ 0.58
RAB3D-201ENST00000222120 ERICH3Q5RHP9 1530 aa18.66■□□□□ 0.58
RAB3D-201ENST00000222120 DNAJC5BQ9UF47 199 aa18.66■□□□□ 0.58
RAB3D-201ENST00000222120 PDS5BQ9NTI5 1447 aa18.64■□□□□ 0.57
RAB3D-201ENST00000222120 PLEKHD1A6NEE1 506 aa18.62■□□□□ 0.57
RAB3D-201ENST00000222120 HSPA5P11021 654 aaKnown RBP18.61■□□□□ 0.57
RAB3D-201ENST00000222120 TIMELESSQ9UNS1 1208 aa18.61■□□□□ 0.57
RAB3D-201ENST00000222120 RGL3Q3MIN7 710 aa18.6■□□□□ 0.57
RAB3D-201ENST00000222120 RRBP1Q9P2E9 1410 aaKnown RBP18.6■□□□□ 0.57
RAB3D-201ENST00000222120 LRRC9Q6ZRR7 1453 aa18.6■□□□□ 0.57
RAB3D-201ENST00000222120 HMGXB3Q12766 1538 aa18.59■□□□□ 0.57
RAB3D-201ENST00000222120 MPHOSPH9Q99550 1183 aa18.58■□□□□ 0.57
RAB3D-201ENST00000222120 TMC1Q8TDI8 760 aa18.55■□□□□ 0.56
RAB3D-201ENST00000222120 L3MBTL2Q969R5 705 aa18.54■□□□□ 0.56
RAB3D-201ENST00000222120 ERCC6Q03468 1493 aa18.51■□□□□ 0.55
RAB3D-201ENST00000222120 GAPVD1Q14C86 1478 aa18.5■□□□□ 0.55
RAB3D-201ENST00000222120 CC2D2AQ9P2K1 1620 aa18.48■□□□□ 0.55
RAB3D-201ENST00000222120 POLA1P09884 1462 aaPredicted RBP18.47■□□□□ 0.55
RAB3D-201ENST00000222120 FGD6Q6ZV73 1430 aa18.47■□□□□ 0.55
RAB3D-201ENST00000222120 ZNF644Q9H582 1327 aaPredicted RBP18.47■□□□□ 0.55
RAB3D-201ENST00000222120 CCER2I3L3R5 266 aa18.47■□□□□ 0.55
RAB3D-201ENST00000222120 CARD11Q9BXL7 1154 aa18.46■□□□□ 0.55
RAB3D-201ENST00000222120 AQRO60306 1485 aaKnown RBP eCLIP18.46■□□□□ 0.55
RAB3D-201ENST00000222120 PKD2Q13563 968 aa18.46■□□□□ 0.55
RAB3D-201ENST00000222120 CCDC18Q5T9S5 1454 aa18.46■□□□□ 0.55
RAB3D-201ENST00000222120 TOPBP1Q92547 1522 aa18.44■□□□□ 0.54
RAB3D-201ENST00000222120 DCAF11Q8TEB1 546 aa18.41■□□□□ 0.54
RAB3D-201ENST00000222120 CASKIN1Q8WXD9 1431 aa18.41■□□□□ 0.54
RAB3D-201ENST00000222120 TIAM1Q13009 1591 aa18.41■□□□□ 0.54
RAB3D-201ENST00000222120 CHGAP10645 457 aaKnown RBP18.41■□□□□ 0.54
RAB3D-201ENST00000222120 BIVM-ERCC5R4GMW8 1640 aa18.4■□□□□ 0.54
RAB3D-201ENST00000222120 ANP32EQ9BTT0 268 aa18.38■□□□□ 0.53
RAB3D-201ENST00000222120 SENP3Q9H4L4 574 aaPredicted RBP18.38■□□□□ 0.53
RAB3D-201ENST00000222120 CCDC136Q96JN2 1154 aa18.38■□□□□ 0.53
RAB3D-201ENST00000222120 TSHZ2Q9NRE2 1034 aa18.38■□□□□ 0.53
RAB3D-201ENST00000222120 B4GALNT3Q6L9W6 998 aa18.36■□□□□ 0.53
RAB3D-201ENST00000222120 JPH4Q96JJ6 628 aa18.36■□□□□ 0.53
RAB3D-201ENST00000222120 NPM2Q86SE8 214 aaKnown RBP18.36■□□□□ 0.53
RAB3D-201ENST00000222120 NCOA2Q15596 1464 aa18.36■□□□□ 0.53
RAB3D-201ENST00000222120 MYOM3Q5VTT5 1437 aa18.35■□□□□ 0.53
RAB3D-201ENST00000222120 HNRNPMP52272 730 aaKnown RBP eCLIP18.35■□□□□ 0.53
RAB3D-201ENST00000222120 WDR97A6NE52 1622 aa18.33■□□□□ 0.52
RAB3D-201ENST00000222120 DAXXQ9UER7 740 aaPredicted RBP18.32■□□□□ 0.52
RAB3D-201ENST00000222120 NUP155O75694 1391 aa18.31■□□□□ 0.52
RAB3D-201ENST00000222120 FYCO1Q9BQS8 1478 aa18.31■□□□□ 0.52
RAB3D-201ENST00000222120 UACAQ9BZF9 1416 aa18.3■□□□□ 0.52
RAB3D-201ENST00000222120 PCF11O94913 1555 aaKnown RBP18.29■□□□□ 0.52
RAB3D-201ENST00000222120 RBM19Q9Y4C8 960 aaKnown RBP18.26■□□□□ 0.51
RAB3D-201ENST00000222120 CC2D1BQ5T0F9 858 aaKnown RBP18.26■□□□□ 0.51
RAB3D-201ENST00000222120 ABCA10Q8WWZ4 1543 aa18.26■□□□□ 0.51
RAB3D-201ENST00000222120 DNMBPQ6XZF7 1577 aa18.26■□□□□ 0.51
RAB3D-201ENST00000222120 WASHC2AQ641Q2 1341 aa18.24■□□□□ 0.51
RAB3D-201ENST00000222120 CARMIL2Q6F5E8 1435 aa18.23■□□□□ 0.51
RAB3D-201ENST00000222120 RTL5Q5HYW3 569 aaPredicted RBP18.23■□□□□ 0.51
RAB3D-201ENST00000222120 PRKRIP1Q9H875 184 aaPredicted RBP18.22■□□□□ 0.51
RAB3D-201ENST00000222120 PPP4R2Q9NY27 417 aa18.22■□□□□ 0.51
RAB3D-201ENST00000222120 ANKRD30AQ9BXX3 1397 aa18.21■□□□□ 0.51
RAB3D-201ENST00000222120 ANP32AP39687 249 aaKnown RBP18.2■□□□□ 0.5
RAB3D-201ENST00000222120 BCL11AQ9H165 835 aa18.18■□□□□ 0.5
RAB3D-201ENST00000222120 EFCAB5A4FU69 1503 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms