RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ERICH6BQ5W0A0 696 aa20.39■□□□□ 0.85
PTPRA-201ENST00000216877 HNRNPUQ00839 825 aaKnown RBP eCLIP20.38■□□□□ 0.85
PTPRA-201ENST00000216877 B4GALNT3Q6L9W6 998 aa20.36■□□□□ 0.85
PTPRA-201ENST00000216877 UBE2Q2Q8WVN8 375 aa20.35■□□□□ 0.85
PTPRA-201ENST00000216877 CFTRP13569 1480 aa20.34■□□□□ 0.85
PTPRA-201ENST00000216877 NPM2Q86SE8 214 aaKnown RBP20.3■□□□□ 0.84
PTPRA-201ENST00000216877 ZBTB47Q9UFB7 747 aaPredicted RBP20.3■□□□□ 0.84
PTPRA-201ENST00000216877 ANP32AP39687 249 aaKnown RBP20.29■□□□□ 0.84
PTPRA-201ENST00000216877 ATP1B4Q9UN42 357 aaPredicted RBP20.29■□□□□ 0.84
PTPRA-201ENST00000216877 WDR97A6NE52 1622 aa20.28■□□□□ 0.84
PTPRA-201ENST00000216877 WRNQ14191 1432 aaPredicted RBP eCLIP20.24■□□□□ 0.83
PTPRA-201ENST00000216877 LAS1LQ9Y4W2 734 aaKnown RBP20.24■□□□□ 0.83
PTPRA-201ENST00000216877 CUX1P39880 1505 aa20.23■□□□□ 0.83
PTPRA-201ENST00000216877 TIMELESSQ9UNS1 1208 aa20.19■□□□□ 0.82
PTPRA-201ENST00000216877 PPP4R2Q9NY27 417 aa20.17■□□□□ 0.82
PTPRA-201ENST00000216877 CNGB1Q14028 1251 aaPredicted RBP20.16■□□□□ 0.82
PTPRA-201ENST00000216877 RUSC2Q8N2Y8 1516 aa20.16■□□□□ 0.82
PTPRA-201ENST00000216877 NEFMP07197 916 aa20.15■□□□□ 0.82
PTPRA-201ENST00000216877 DHX57Q6P158 1386 aaKnown RBP20.14■□□□□ 0.82
PTPRA-201ENST00000216877 PKNOX2Q96KN3 472 aa20.14■□□□□ 0.81
PTPRA-201ENST00000216877 TNIKQ9UKE5 1360 aa20.13■□□□□ 0.81
PTPRA-201ENST00000216877 KIF21BO75037 1637 aa20.12■□□□□ 0.81
PTPRA-201ENST00000216877 BRPF3Q9ULD4 1205 aa20.08■□□□□ 0.8
PTPRA-201ENST00000216877 SIN3AQ96ST3 1273 aa20.06■□□□□ 0.8
PTPRA-201ENST00000216877 SOGA1O94964 1423 aa20.06■□□□□ 0.8
PTPRA-201ENST00000216877 KIF21AQ7Z4S6 1674 aa20.06■□□□□ 0.8
PTPRA-201ENST00000216877 SENP3-EIF4A1A0A087X0R7 540 aa20.05■□□□□ 0.8
PTPRA-201ENST00000216877 IPO9Q96P70 1041 aaKnown RBP20.05■□□□□ 0.8
PTPRA-201ENST00000216877 FAM9BQ8IZU0 186 aa20.03■□□□□ 0.8
PTPRA-201ENST00000216877 CCER2I3L3R5 266 aa20■□□□□ 0.79
PTPRA-201ENST00000216877 LAMC3Q9Y6N6 1575 aa19.99■□□□□ 0.79
PTPRA-201ENST00000216877 VSIG10Q8N0Z9 540 aa19.93■□□□□ 0.78
PTPRA-201ENST00000216877 CLIP1P30622 1438 aa19.92■□□□□ 0.78
PTPRA-201ENST00000216877 PPP1R15AO75807 674 aaPredicted RBP19.91■□□□□ 0.78
PTPRA-201ENST00000216877 GLIPR1L2Q4G1C9 344 aa19.9■□□□□ 0.78
PTPRA-201ENST00000216877 DAXXQ9UER7 740 aaPredicted RBP19.87■□□□□ 0.77
PTPRA-201ENST00000216877 TARBP1Q13395 1621 aaKnown RBP19.87■□□□□ 0.77
PTPRA-201ENST00000216877 NESP48681 1621 aa19.87■□□□□ 0.77
PTPRA-201ENST00000216877 ABCA5Q8WWZ7 1642 aa19.86■□□□□ 0.77
PTPRA-201ENST00000216877 DNMBPQ6XZF7 1577 aa19.86■□□□□ 0.77
PTPRA-201ENST00000216877 CADPSQ9ULU8 1353 aa19.86■□□□□ 0.77
PTPRA-201ENST00000216877 DNAJC5BQ9UF47 199 aa19.85■□□□□ 0.77
PTPRA-201ENST00000216877 KANK4Q5T7N3 995 aaPredicted RBP19.84■□□□□ 0.77
PTPRA-201ENST00000216877 PRXQ9BXM0 1461 aa19.84■□□□□ 0.77
PTPRA-201ENST00000216877 PLEKHG5O94827 1062 aa19.83■□□□□ 0.77
PTPRA-201ENST00000216877 ERICH3Q5RHP9 1530 aa19.82■□□□□ 0.76
PTPRA-201ENST00000216877 FAM50AQ14320 339 aaKnown RBP19.81■□□□□ 0.76
PTPRA-201ENST00000216877 EEA1Q15075 1411 aa19.8■□□□□ 0.76
PTPRA-201ENST00000216877 ARXQ96QS3 562 aa19.8■□□□□ 0.76
PTPRA-201ENST00000216877 URB2Q14146 1524 aaKnown RBP19.8■□□□□ 0.76
PTPRA-201ENST00000216877 GOLGA3Q08378 1498 aa19.79■□□□□ 0.76
PTPRA-201ENST00000216877 MRS2Q9HD23 443 aa19.77■□□□□ 0.76
PTPRA-201ENST00000216877 PODXL2Q9NZ53 605 aa19.76■□□□□ 0.75
PTPRA-201ENST00000216877 PPM1GO15355 546 aaPredicted RBP19.74■□□□□ 0.75
PTPRA-201ENST00000216877 GSE1Q14687 1217 aa19.74■□□□□ 0.75
PTPRA-201ENST00000216877 THOC2Q8NI27 1593 aaKnown RBP19.74■□□□□ 0.75
PTPRA-201ENST00000216877 POLR3GLQ9BT43 218 aa19.73■□□□□ 0.75
PTPRA-201ENST00000216877 ZMYND15Q9H091 742 aa19.72■□□□□ 0.75
PTPRA-201ENST00000216877 SLC4A3P48751 1232 aa19.72■□□□□ 0.75
PTPRA-201ENST00000216877 VPS8Q8N3P4 1428 aa19.72■□□□□ 0.75
PTPRA-201ENST00000216877 RSPH6AQ9H0K4 717 aa19.72■□□□□ 0.75
PTPRA-201ENST00000216877 TOPBP1Q92547 1522 aa19.71■□□□□ 0.75
PTPRA-201ENST00000216877 P3H3Q8IVL6 736 aa19.71■□□□□ 0.75
PTPRA-201ENST00000216877 FANCD2Q9BXW9 1451 aa19.71■□□□□ 0.75
PTPRA-201ENST00000216877 CCDC184Q52MB2 194 aa19.69■□□□□ 0.74
PTPRA-201ENST00000216877 FRAT1Q92837 279 aaPredicted RBP19.68■□□□□ 0.74
PTPRA-201ENST00000216877 ABCA10Q8WWZ4 1543 aa19.67■□□□□ 0.74
PTPRA-201ENST00000216877 USP35Q9P2H5 1018 aa19.67■□□□□ 0.74
PTPRA-201ENST00000216877 NAP1L5Q96NT1 182 aaPredicted RBP19.66■□□□□ 0.74
PTPRA-201ENST00000216877 WASHC2AQ641Q2 1341 aa19.66■□□□□ 0.74
PTPRA-201ENST00000216877 FGD5Q6ZNL6 1462 aa19.66■□□□□ 0.74
PTPRA-201ENST00000216877 ARID4BQ4LE39 1312 aaPredicted RBP19.66■□□□□ 0.74
PTPRA-201ENST00000216877 RAB3GAP2Q9H2M9 1393 aa19.66■□□□□ 0.74
PTPRA-201ENST00000216877 RAPGEF2Q9Y4G8 1499 aa19.65■□□□□ 0.74
PTPRA-201ENST00000216877 LRRIQ1Q96JM4 1722 aa19.65■□□□□ 0.74
PTPRA-201ENST00000216877 PBRM1Q86U86 1689 aa19.65■□□□□ 0.74
PTPRA-201ENST00000216877 POLA1P09884 1462 aaPredicted RBP19.63■□□□□ 0.73
PTPRA-201ENST00000216877 WDR62O43379 1518 aa19.63■□□□□ 0.73
PTPRA-201ENST00000216877 TONSLQ96HA7 1378 aa19.61■□□□□ 0.73
PTPRA-201ENST00000216877 CTTNBP2Q8WZ74 1663 aa19.6■□□□□ 0.73
PTPRA-201ENST00000216877 A0A0U1RQG5 324 aaPredicted RBP19.59■□□□□ 0.73
PTPRA-201ENST00000216877 C11orf95C9JLR9 678 aaPredicted RBP19.59■□□□□ 0.73
PTPRA-201ENST00000216877 ARID3CA6NKF2 412 aa19.59■□□□□ 0.73
PTPRA-201ENST00000216877 NFKBIBQ15653 356 aa19.58■□□□□ 0.72
PTPRA-201ENST00000216877 CUL7Q14999 1698 aa19.56■□□□□ 0.72
PTPRA-201ENST00000216877 PDE4AP27815 886 aa19.56■□□□□ 0.72
PTPRA-201ENST00000216877 CCNB3Q8WWL7 1395 aa19.55■□□□□ 0.72
PTPRA-201ENST00000216877 WASHC2CQ9Y4E1 1318 aa19.55■□□□□ 0.72
PTPRA-201ENST00000216877 CEP164Q9UPV0 1460 aa19.55■□□□□ 0.72
PTPRA-201ENST00000216877 HSP90AA2PQ14568 343 aaPredicted RBP19.54■□□□□ 0.72
PTPRA-201ENST00000216877 CUX2O14529 1486 aa19.54■□□□□ 0.72
PTPRA-201ENST00000216877 FBLN2P98095 1184 aa19.53■□□□□ 0.72
PTPRA-201ENST00000216877 SLC24A1O60721 1099 aa19.53■□□□□ 0.72
PTPRA-201ENST00000216877 AKNAQ7Z591 1439 aa19.5■□□□□ 0.71
PTPRA-201ENST00000216877 ARAP1Q96P48 1450 aa19.49■□□□□ 0.71
PTPRA-201ENST00000216877 SKAP1Q86WV1 359 aa19.47■□□□□ 0.71
PTPRA-201ENST00000216877 SAMD9Q5K651 1589 aa19.46■□□□□ 0.71
PTPRA-201ENST00000216877 HSP90AA1P07900 732 aaKnown RBP19.46■□□□□ 0.71
PTPRA-201ENST00000216877 FAM43AQ8N2R8 423 aa19.45■□□□□ 0.7
PTPRA-201ENST00000216877 DDRGK1Q96HY6 314 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms