RNA–Protein interactions for RNA: ENST00000216605.12

MTHFD1-201, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MTHFD1, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-201ENST00000216605 BCL11AQ9H165 835 aa13.4□□□□□ -0.26
MTHFD1-201ENST00000216605 GAPVD1Q14C86 1478 aa13.38□□□□□ -0.27
MTHFD1-201ENST00000216605 ARAP1Q96P48 1450 aa13.37□□□□□ -0.27
MTHFD1-201ENST00000216605 MRC2Q9UBG0 1479 aa13.36□□□□□ -0.27
MTHFD1-201ENST00000216605 SCAF1Q9H7N4 1312 aaKnown RBP13.36□□□□□ -0.27
MTHFD1-201ENST00000216605 ARHGAP35Q9NRY4 1499 aa13.35□□□□□ -0.27
MTHFD1-201ENST00000216605 KANK4Q5T7N3 995 aaPredicted RBP13.35□□□□□ -0.27
MTHFD1-201ENST00000216605 AQRO60306 1485 aaKnown RBP eCLIP13.33□□□□□ -0.273e-9■■■■■ 30.6
MTHFD1-201ENST00000216605 FBLN2P98095 1184 aa13.32□□□□□ -0.28
MTHFD1-201ENST00000216605 ITGAEP38570 1179 aa13.31□□□□□ -0.28
MTHFD1-201ENST00000216605 FHOD3Q2V2M9 1422 aa13.28□□□□□ -0.28
MTHFD1-201ENST00000216605 CUL7Q14999 1698 aa13.28□□□□□ -0.28
MTHFD1-201ENST00000216605 FHAD1B1AJZ9 1412 aa13.25□□□□□ -0.29
MTHFD1-201ENST00000216605 NCBP3Q53F19 620 aaKnown RBP13.24□□□□□ -0.29
MTHFD1-201ENST00000216605 ABCA5Q8WWZ7 1642 aa13.24□□□□□ -0.29
MTHFD1-201ENST00000216605 ZNF608Q9ULD9 1512 aaPredicted RBP13.23□□□□□ -0.29
MTHFD1-201ENST00000216605 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
MTHFD1-201ENST00000216605 CHMP7Q8WUX9 453 aaPredicted RBP13.23□□□□□ -0.29
MTHFD1-201ENST00000216605 WDR97A6NE52 1622 aa13.22□□□□□ -0.29
MTHFD1-201ENST00000216605 TARBP1Q13395 1621 aaKnown RBP13.22□□□□□ -0.29
MTHFD1-201ENST00000216605 GRIN2BQ13224 1484 aa13.21□□□□□ -0.29
MTHFD1-201ENST00000216605 ARID3CA6NKF2 412 aa13.21□□□□□ -0.29
MTHFD1-201ENST00000216605 FAM50AQ14320 339 aaKnown RBP13.21□□□□□ -0.3
MTHFD1-201ENST00000216605 WDR62O43379 1518 aa13.18□□□□□ -0.3
MTHFD1-201ENST00000216605 FMN1Q68DA7 1419 aa13.16□□□□□ -0.3
MTHFD1-201ENST00000216605 CTTNBP2Q8WZ74 1663 aa13.16□□□□□ -0.3
MTHFD1-201ENST00000216605 EFCAB5A4FU69 1503 aa13.15□□□□□ -0.3
MTHFD1-201ENST00000216605 PBRM1Q86U86 1689 aa13.14□□□□□ -0.31
MTHFD1-201ENST00000216605 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
MTHFD1-201ENST00000216605 MTUS2Q5JR59 1369 aa13.14□□□□□ -0.31
MTHFD1-201ENST00000216605 CCNB3Q8WWL7 1395 aa13.13□□□□□ -0.31
MTHFD1-201ENST00000216605 PCF11O94913 1555 aaKnown RBP13.12□□□□□ -0.31
MTHFD1-201ENST00000216605 TIAM1Q13009 1591 aa13.12□□□□□ -0.31
MTHFD1-201ENST00000216605 LRRC9Q6ZRR7 1453 aa13.1□□□□□ -0.31
MTHFD1-201ENST00000216605 CASKIN1Q8WXD9 1431 aa13.1□□□□□ -0.31
MTHFD1-201ENST00000216605 ADAMTS12P58397 1594 aa13.1□□□□□ -0.31
MTHFD1-201ENST00000216605 FYCO1Q9BQS8 1478 aa13.08□□□□□ -0.31
MTHFD1-201ENST00000216605 EIF4G3O43432 1585 aaKnown RBP13.08□□□□□ -0.32
MTHFD1-201ENST00000216605 THOC2Q8NI27 1593 aaKnown RBP13.08□□□□□ -0.32
MTHFD1-201ENST00000216605 ACIN1Q9UKV3 1341 aaKnown RBP13.07□□□□□ -0.32
MTHFD1-201ENST00000216605 IQGAP2Q13576 1575 aa13.07□□□□□ -0.32
MTHFD1-201ENST00000216605 PHLDB1Q86UU1 1377 aa13.06□□□□□ -0.32
MTHFD1-201ENST00000216605 RRBP1Q9P2E9 1410 aaKnown RBP13.05□□□□□ -0.32
MTHFD1-201ENST00000216605 GRIN2AQ12879 1464 aa13.04□□□□□ -0.32
MTHFD1-201ENST00000216605 MAP3K1Q13233 1512 aa13.04□□□□□ -0.32
MTHFD1-201ENST00000216605 CENPBP07199 599 aaPredicted RBP13.04□□□□□ -0.32
MTHFD1-201ENST00000216605 KIAA0586Q9BVV6 1533 aa13.02□□□□□ -0.33
MTHFD1-201ENST00000216605 JPH4Q96JJ6 628 aa13.02□□□□□ -0.33
MTHFD1-201ENST00000216605 MAGI1Q96QZ7 1491 aaPredicted RBP13.02□□□□□ -0.33
MTHFD1-201ENST00000216605 TIMELESSQ9UNS1 1208 aa13.02□□□□□ -0.33
MTHFD1-201ENST00000216605 SYNJ2O15056 1496 aa13.01□□□□□ -0.33
MTHFD1-201ENST00000216605 SAMD9Q5K651 1589 aa13.01□□□□□ -0.33
MTHFD1-201ENST00000216605 NEUROD1Q13562 356 aa12.98□□□□□ -0.33
MTHFD1-201ENST00000216605 CDK11AQ9UQ88 783 aaPredicted RBP12.98□□□□□ -0.33
MTHFD1-201ENST00000216605 CFAP43Q8NDM7 1665 aa12.97□□□□□ -0.33
MTHFD1-201ENST00000216605 CARMIL2Q6F5E8 1435 aa12.96□□□□□ -0.33
MTHFD1-201ENST00000216605 DIEXFQ68CQ4 756 aaKnown RBP12.94□□□□□ -0.34
MTHFD1-201ENST00000216605 CHIC2Q9UKJ5 165 aa12.94□□□□□ -0.34
MTHFD1-201ENST00000216605 RAB3GAP2Q9H2M9 1393 aa12.94□□□□□ -0.34
MTHFD1-201ENST00000216605 UGGT2Q9NYU1 1516 aa12.94□□□□□ -0.34
MTHFD1-201ENST00000216605 NCOA2Q15596 1464 aa12.93□□□□□ -0.34
MTHFD1-201ENST00000216605 CCDC18Q5T9S5 1454 aa12.93□□□□□ -0.34
MTHFD1-201ENST00000216605 CDK13Q14004 1512 aaKnown RBP12.93□□□□□ -0.34
MTHFD1-201ENST00000216605 DHX57Q6P158 1386 aaKnown RBP12.93□□□□□ -0.34
MTHFD1-201ENST00000216605 GTF3C3Q9Y5Q9 886 aa12.93□□□□□ -0.34
MTHFD1-201ENST00000216605 FGD6Q6ZV73 1430 aa12.92□□□□□ -0.34
MTHFD1-201ENST00000216605 HECW1Q76N89 1606 aa12.92□□□□□ -0.34
MTHFD1-201ENST00000216605 SETD5Q9C0A6 1442 aa12.92□□□□□ -0.34
MTHFD1-201ENST00000216605 EPRSP07814 1512 aaKnown RBP12.91□□□□□ -0.34
MTHFD1-201ENST00000216605 EIF5BO60841 1220 aaKnown RBP12.91□□□□□ -0.34
MTHFD1-201ENST00000216605 DISP1Q96F81 1524 aa12.91□□□□□ -0.34
MTHFD1-201ENST00000216605 CEP170Q5SW79 1584 aa12.91□□□□□ -0.34
MTHFD1-201ENST00000216605 ZNF777Q9ULD5 760 aaPredicted RBP12.9□□□□□ -0.34
MTHFD1-201ENST00000216605 KIAA0556O60303 1618 aa12.9□□□□□ -0.34
MTHFD1-201ENST00000216605 MYOM3Q5VTT5 1437 aa12.89□□□□□ -0.35
MTHFD1-201ENST00000216605 EHBP1L1Q8N3D4 1523 aa12.89□□□□□ -0.35
MTHFD1-201ENST00000216605 RRP7BPQ9NSQ0 103 aa12.88□□□□□ -0.35
MTHFD1-201ENST00000216605 ZNF316A6NFI3 1004 aaPredicted RBP12.88□□□□□ -0.35
MTHFD1-201ENST00000216605 SUPT6HQ7KZ85 1726 aaKnown RBP12.87□□□□□ -0.35
MTHFD1-201ENST00000216605 PLEKHD1A6NEE1 506 aa12.87□□□□□ -0.35
MTHFD1-201ENST00000216605 NUP160Q12769 1436 aa12.87□□□□□ -0.35
MTHFD1-201ENST00000216605 PLB1Q6P1J6 1458 aa12.87□□□□□ -0.35
MTHFD1-201ENST00000216605 CLSPNQ9HAW4 1339 aa12.87□□□□□ -0.35
MTHFD1-201ENST00000216605 TRIM52Q96A61 297 aa12.86□□□□□ -0.35
MTHFD1-201ENST00000216605 PRG4Q92954 1404 aaPredicted RBP12.85□□□□□ -0.35
MTHFD1-201ENST00000216605 LRRIQ1Q96JM4 1722 aa12.85□□□□□ -0.35
MTHFD1-201ENST00000216605 KLHL34Q8N239 644 aa12.85□□□□□ -0.35
MTHFD1-201ENST00000216605 MAGI3Q5TCQ9 1506 aa12.84□□□□□ -0.35
MTHFD1-201ENST00000216605 PLEKHG5O94827 1062 aa12.83□□□□□ -0.36
MTHFD1-201ENST00000216605 KCNA4P22459 653 aa12.83□□□□□ -0.36
MTHFD1-201ENST00000216605 PTPRGP23470 1445 aa12.83□□□□□ -0.36
MTHFD1-201ENST00000216605 CFDP1Q9UEE9 299 aaPredicted RBP12.83□□□□□ -0.36
MTHFD1-201ENST00000216605 NUP153P49790 1475 aaKnown RBP12.82□□□□□ -0.36
MTHFD1-201ENST00000216605 RAPGEF6Q8TEU7 1601 aa12.82□□□□□ -0.36
MTHFD1-201ENST00000216605 SIN3AQ96ST3 1273 aa12.82□□□□□ -0.36
MTHFD1-201ENST00000216605 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.81□□□□□ -0.36
MTHFD1-201ENST00000216605 TULP1O00294 542 aaPredicted RBP12.81□□□□□ -0.36
MTHFD1-201ENST00000216605 ZNF644Q9H582 1327 aaPredicted RBP12.8□□□□□ -0.36
MTHFD1-201ENST00000216605 PTPN23Q9H3S7 1636 aa12.78□□□□□ -0.36
MTHFD1-201ENST00000216605 PTPRKQ15262 1439 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms