RNA–Protein interactions for RNA: ENST00000035307.6

CHPF2-201, Transcript of chondroitin polymerizing factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHPF2, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPF2-201ENST00000035307 IGF1RP08069 1367 aa17.3■□□□□ 0.36
CHPF2-201ENST00000035307 HIRIP3Q9BW71 556 aaPredicted RBP17.29■□□□□ 0.36
CHPF2-201ENST00000035307 FHOD3Q2V2M9 1422 aa17.28■□□□□ 0.36
CHPF2-201ENST00000035307 CUX1P39880 1505 aa17.26■□□□□ 0.35
CHPF2-201ENST00000035307 SENP3Q9H4L4 574 aaPredicted RBP17.26■□□□□ 0.35
CHPF2-201ENST00000035307 SCAF1Q9H7N4 1312 aaKnown RBP17.25■□□□□ 0.35
CHPF2-201ENST00000035307 ACIN1Q9UKV3 1341 aaKnown RBP17.24■□□□□ 0.35
CHPF2-201ENST00000035307 CDK11AQ9UQ88 783 aaPredicted RBP17.24■□□□□ 0.35
CHPF2-201ENST00000035307 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.21■□□□□ 0.356e-6■□□□□ 8.3
CHPF2-201ENST00000035307 HMGXB3Q12766 1538 aa17.21■□□□□ 0.35
CHPF2-201ENST00000035307 PLPPR3Q6T4P5 718 aa17.2■□□□□ 0.34
CHPF2-201ENST00000035307 VPS8Q8N3P4 1428 aa17.19■□□□□ 0.34
CHPF2-201ENST00000035307 MIER1Q8N108 512 aa17.13■□□□□ 0.33
CHPF2-201ENST00000035307 PLEKHD1A6NEE1 506 aa17.13■□□□□ 0.33
CHPF2-201ENST00000035307 SIN3AQ96ST3 1273 aa17.13■□□□□ 0.33
CHPF2-201ENST00000035307 GAPVD1Q14C86 1478 aa17.12■□□□□ 0.33
CHPF2-201ENST00000035307 JPH4Q96JJ6 628 aa17.12■□□□□ 0.33
CHPF2-201ENST00000035307 POLA1P09884 1462 aaPredicted RBP17.12■□□□□ 0.33
CHPF2-201ENST00000035307 TOPBP1Q92547 1522 aa17.11■□□□□ 0.33
CHPF2-201ENST00000035307 PEG3Q9GZU2 1588 aa17.1■□□□□ 0.33
CHPF2-201ENST00000035307 NPM1P06748 294 aaKnown RBP eCLIP17.1■□□□□ 0.33
CHPF2-201ENST00000035307 ERICH6Q7L0X2 663 aa17.1■□□□□ 0.33
CHPF2-201ENST00000035307 CFDP1Q9UEE9 299 aaPredicted RBP17.09■□□□□ 0.33
CHPF2-201ENST00000035307 FOXD1Q16676 465 aa17.06■□□□□ 0.32
CHPF2-201ENST00000035307 DDX10Q13206 875 aaKnown RBP17.05■□□□□ 0.32
CHPF2-201ENST00000035307 TOP2BQ02880 1626 aa17.04■□□□□ 0.32
CHPF2-201ENST00000035307 KDM2AQ9Y2K7 1162 aa17.02■□□□□ 0.32
CHPF2-201ENST00000035307 CCNB3Q8WWL7 1395 aa17.02■□□□□ 0.31
CHPF2-201ENST00000035307 TSPY4P0CV99 314 aa17.01■□□□□ 0.31
CHPF2-201ENST00000035307 TSPY10P0CW01 314 aa17.01■□□□□ 0.31
CHPF2-201ENST00000035307 ARAP1Q96P48 1450 aa17■□□□□ 0.31
CHPF2-201ENST00000035307 CHGAP10645 457 aaKnown RBP16.98■□□□□ 0.31
CHPF2-201ENST00000035307 SLC4A1APQ9BWU0 796 aaKnown RBP16.98■□□□□ 0.31
CHPF2-201ENST00000035307 URB2Q14146 1524 aaKnown RBP16.98■□□□□ 0.31
CHPF2-201ENST00000035307 FHAD1B1AJZ9 1412 aa16.97■□□□□ 0.31
CHPF2-201ENST00000035307 ZNF608Q9ULD9 1512 aaPredicted RBP16.95■□□□□ 0.3
CHPF2-201ENST00000035307 KIF21BO75037 1637 aa16.94■□□□□ 0.3
CHPF2-201ENST00000035307 ANP32CO43423 234 aa16.94■□□□□ 0.3
CHPF2-201ENST00000035307 RGL3Q3MIN7 710 aa16.94■□□□□ 0.3
CHPF2-201ENST00000035307 PRXQ9BXM0 1461 aa16.94■□□□□ 0.3
CHPF2-201ENST00000035307 ZNF644Q9H582 1327 aaPredicted RBP16.93■□□□□ 0.3
CHPF2-201ENST00000035307 ARHGAP35Q9NRY4 1499 aa16.91■□□□□ 0.3
CHPF2-201ENST00000035307 SENP3-EIF4A1A0A087X0R7 540 aa16.91■□□□□ 0.3
CHPF2-201ENST00000035307 TONSLQ96HA7 1378 aa16.91■□□□□ 0.3
CHPF2-201ENST00000035307 MRC2Q9UBG0 1479 aa16.9■□□□□ 0.3
CHPF2-201ENST00000035307 CYB5RLQ6IPT4 315 aa16.89■□□□□ 0.29
CHPF2-201ENST00000035307 HNRNPMP52272 730 aaKnown RBP eCLIP16.88■□□□□ 0.295e-13■■■□□ 14.8
CHPF2-201ENST00000035307 DNMBPQ6XZF7 1577 aa16.85■□□□□ 0.29
CHPF2-201ENST00000035307 FMN1Q68DA7 1419 aa16.85■□□□□ 0.29
CHPF2-201ENST00000035307 SNAPC4Q5SXM2 1469 aa16.82■□□□□ 0.28
CHPF2-201ENST00000035307 RAB3GAP2Q9H2M9 1393 aa16.82■□□□□ 0.28
CHPF2-201ENST00000035307 CARMIL2Q6F5E8 1435 aa16.82■□□□□ 0.28
CHPF2-201ENST00000035307 PHLDB1Q86UU1 1377 aa16.82■□□□□ 0.28
CHPF2-201ENST00000035307 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
CHPF2-201ENST00000035307 GRIN2BQ13224 1484 aa16.8■□□□□ 0.28
CHPF2-201ENST00000035307 FKBP8Q14318 412 aa16.8■□□□□ 0.28
CHPF2-201ENST00000035307 PTPRGP23470 1445 aa16.77■□□□□ 0.28
CHPF2-201ENST00000035307 IRX6P78412 446 aaPredicted RBP16.76■□□□□ 0.27
CHPF2-201ENST00000035307 MYT1Q01538 1121 aa16.76■□□□□ 0.27
CHPF2-201ENST00000035307 MLECQ14165 292 aa16.76■□□□□ 0.27
CHPF2-201ENST00000035307 ABCA10Q8WWZ4 1543 aa16.76■□□□□ 0.27
CHPF2-201ENST00000035307 FAM9BQ8IZU0 186 aa16.74■□□□□ 0.27
CHPF2-201ENST00000035307 HNRNPUQ00839 825 aaKnown RBP eCLIP16.73■□□□□ 0.27
CHPF2-201ENST00000035307 OSCARQ8IYS5 282 aa16.73■□□□□ 0.27
CHPF2-201ENST00000035307 SALL2Q9Y467 1007 aaPredicted RBP16.73■□□□□ 0.27
CHPF2-201ENST00000035307 TRHP20396 242 aaPredicted RBP16.72■□□□□ 0.27
CHPF2-201ENST00000035307 IFT140Q96RY7 1462 aa16.71■□□□□ 0.27
CHPF2-201ENST00000035307 SETD5Q9C0A6 1442 aa16.7■□□□□ 0.26
CHPF2-201ENST00000035307 PRDM2Q13029 1718 aa16.69■□□□□ 0.26
CHPF2-201ENST00000035307 ERICH3Q5RHP9 1530 aa16.69■□□□□ 0.26
CHPF2-201ENST00000035307 GGT6Q6P531 493 aa16.69■□□□□ 0.26
CHPF2-201ENST00000035307 PRG4Q92954 1404 aaPredicted RBP16.67■□□□□ 0.26
CHPF2-201ENST00000035307 BIVM-ERCC5R4GMW8 1640 aa16.67■□□□□ 0.26
CHPF2-201ENST00000035307 PKD2Q13563 968 aa16.67■□□□□ 0.26
CHPF2-201ENST00000035307 KIF21AQ7Z4S6 1674 aa16.67■□□□□ 0.26
CHPF2-201ENST00000035307 STAG3Q9UJ98 1225 aa16.66■□□□□ 0.26
CHPF2-201ENST00000035307 ESF1Q9H501 851 aaKnown RBP16.64■□□□□ 0.25
CHPF2-201ENST00000035307 MPHOSPH9Q99550 1183 aa16.64■□□□□ 0.25
CHPF2-201ENST00000035307 ARID4BQ4LE39 1312 aaPredicted RBP16.63■□□□□ 0.25
CHPF2-201ENST00000035307 LRRC9Q6ZRR7 1453 aa16.63■□□□□ 0.25
CHPF2-201ENST00000035307 CDK13Q14004 1512 aaKnown RBP16.62■□□□□ 0.25
CHPF2-201ENST00000035307 DHX57Q6P158 1386 aaKnown RBP16.61■□□□□ 0.25
CHPF2-201ENST00000035307 DCAF11Q8TEB1 546 aa16.6■□□□□ 0.25
CHPF2-201ENST00000035307 PLB1Q6P1J6 1458 aa16.59■□□□□ 0.25
CHPF2-201ENST00000035307 NUTM2DQ5VT03 806 aaPredicted RBP16.58■□□□□ 0.25
CHPF2-201ENST00000035307 EFCAB2Q5VUJ9 269 aa16.58■□□□□ 0.24
CHPF2-201ENST00000035307 NUP155O75694 1391 aa16.58■□□□□ 0.24
CHPF2-201ENST00000035307 AFAP1Q8N556 730 aa16.57■□□□□ 0.24
CHPF2-201ENST00000035307 PLEKHG5O94827 1062 aa16.57■□□□□ 0.24
CHPF2-201ENST00000035307 CASKIN1Q8WXD9 1431 aa16.57■□□□□ 0.24
CHPF2-201ENST00000035307 KIF3BO15066 747 aa16.57■□□□□ 0.24
CHPF2-201ENST00000035307 NCOA2Q15596 1464 aa16.55■□□□□ 0.24
CHPF2-201ENST00000035307 CCDC18Q5T9S5 1454 aa16.55■□□□□ 0.24
CHPF2-201ENST00000035307 FGD6Q6ZV73 1430 aa16.54■□□□□ 0.24
CHPF2-201ENST00000035307 L3MBTL2Q969R5 705 aa16.53■□□□□ 0.24
CHPF2-201ENST00000035307 EIF4G2P78344 907 aaKnown RBP eCLIP16.53■□□□□ 0.24
CHPF2-201ENST00000035307 MRS2Q9HD23 443 aa16.52■□□□□ 0.24
CHPF2-201ENST00000035307 GRIN2AQ12879 1464 aa16.52■□□□□ 0.24
CHPF2-201ENST00000035307 PCF11O94913 1555 aaKnown RBP16.5■□□□□ 0.23
CHPF2-201ENST00000035307 BCL11AQ9H165 835 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms