RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 Golga3P55937 1487 aa13.33□□□□□ -0.27
Ubr1-201ENSMUST00000028728 Rad21Q61550 635 aaKnown RBP13.33□□□□□ -0.28
Ubr1-201ENSMUST00000028728 AU015836B2RUM3 263 aa13.32□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Setd5Q5XJV7 1441 aa13.32□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Trim30dE9PWL0 497 aa13.31□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Gm13697A2AK42 830 aa13.31□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Zbtb7cQ8VCZ7 619 aa13.31□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Zbtb4Q5F293 982 aa13.31□□□□□ -0.28
Ubr1-201ENSMUST00000028728 SafbD3YXK2 937 aaKnown RBP13.31□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Tcerg1Q8CGF7 1100 aaKnown RBP13.3□□□□□ -0.28
Ubr1-201ENSMUST00000028728 DekQ7TNV0 380 aaKnown RBP13.3□□□□□ -0.28
Ubr1-201ENSMUST00000028728 CatipB9EKE5 520 aa13.3□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Clstn2Q9ER65 966 aa13.3□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Cwc22Q8C5N3 908 aaKnown RBP13.29□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Mbd3Q9Z2D8 285 aaKnown RBP13.28□□□□□ -0.28
Ubr1-201ENSMUST00000028728 Eea1Q8BL66 1411 aa13.26□□□□□ -0.29
Ubr1-201ENSMUST00000028728 Baz1aO88379 1555 aa13.25□□□□□ -0.29
Ubr1-201ENSMUST00000028728 Supt16hQ920B9 1047 aa13.24□□□□□ -0.29
Ubr1-201ENSMUST00000028728 Erich6D3Z6S9 713 aa13.23□□□□□ -0.29
Ubr1-201ENSMUST00000028728 Chic2Q9D9G3 165 aa13.22□□□□□ -0.29
Ubr1-201ENSMUST00000028728 Mia2Q91ZV0 1396 aa13.22□□□□□ -0.29
Ubr1-201ENSMUST00000028728 P3h3Q8CG70 732 aa13.21□□□□□ -0.29
Ubr1-201ENSMUST00000028728 Ipo9Q91YE6 1041 aa13.21□□□□□ -0.29
Ubr1-201ENSMUST00000028728 Lmod3E9QA62 571 aa13.21□□□□□ -0.29
Ubr1-201ENSMUST00000028728 PtmaP26350 111 aa13.18□□□□□ -0.3
Ubr1-201ENSMUST00000028728 Rsf1E9PWW9 1441 aaKnown RBP13.18□□□□□ -0.3
Ubr1-201ENSMUST00000028728 Plcb2A3KGF7 1181 aa13.17□□□□□ -0.3
Ubr1-201ENSMUST00000028728 Adam1bQ8R534 806 aa13.16□□□□□ -0.3
Ubr1-201ENSMUST00000028728 Prdm10Q3UTQ7 1184 aa13.14□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Map7O88735 730 aa13.13□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Dnai1Q8C0M8 701 aa13.13□□□□□ -0.31
Ubr1-201ENSMUST00000028728 4933402E13RikQ9D4D2 429 aa13.12□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Chmp4bQ9D8B3 224 aaKnown RBP13.11□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Gtf3c3Q3TMP1 882 aa13.1□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Vsig10D3YX43 558 aa13.1□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Rgl3Q3UYI5 709 aa13.1□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Tnnt2P50752 301 aa13.1□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Card11Q8CIS0 1159 aa13.09□□□□□ -0.31
Ubr1-201ENSMUST00000028728 Atp1b4Q99ME6 356 aa13.08□□□□□ -0.31
Ubr1-201ENSMUST00000028728 NacadQ5SWP3 1504 aa13.08□□□□□ -0.32
Ubr1-201ENSMUST00000028728 Dnttip2Q8R2M2 758 aaKnown RBP13.08□□□□□ -0.32
Ubr1-201ENSMUST00000028728 Fgd1P52734 960 aa13.07□□□□□ -0.32
Ubr1-201ENSMUST00000028728 Rwdd1Q9CQK7 243 aa13.06□□□□□ -0.32
Ubr1-201ENSMUST00000028728 PtmsQ9D0J8 101 aaKnown RBP13.06□□□□□ -0.32
Ubr1-201ENSMUST00000028728 EspnQ9ET47 871 aa13.05□□□□□ -0.32
Ubr1-201ENSMUST00000028728 Chmp5Q9D7S9 219 aa13.05□□□□□ -0.32
Ubr1-201ENSMUST00000028728 Rrp12Q6P5B0 1295 aaKnown RBP13.04□□□□□ -0.32
Ubr1-201ENSMUST00000028728 Gm13695A2AK44 830 aa13.03□□□□□ -0.32
Ubr1-201ENSMUST00000028728 Wwc2Q6NXJ0 1187 aa13.01□□□□□ -0.33
Ubr1-201ENSMUST00000028728 KnstrnQ9D9Z1 312 aaKnown RBP13.01□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Mapk8ip3Q9ESN9 1337 aa13.01□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Slc4a3P16283 1227 aa13□□□□□ -0.33
Ubr1-201ENSMUST00000028728 B4galnt3Q6L8S8 986 aa13□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Casc1Q6TDU8 730 aa13□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Hspa5P20029 655 aaKnown RBP12.99□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Ddrgk1Q80WW9 315 aa12.99□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Nolc1E9Q5C9 702 aaKnown RBP12.98□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Rangap1P46061 589 aaKnown RBP12.98□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Dbr1Q923B1 550 aa12.98□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Cep162Q6ZQ06 1403 aa12.98□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Arid4bA2CG63 1314 aaKnown RBP12.97□□□□□ -0.33
Ubr1-201ENSMUST00000028728 MsnP26041 577 aaKnown RBP12.96□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Apbb1Q9QXJ1 710 aa12.96□□□□□ -0.33
Ubr1-201ENSMUST00000028728 Ipo8Q7TMY7 1010 aa12.96□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Trim26Q99PN3 545 aa12.96□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Mak16Q8BGS0 296 aaKnown RBP12.95□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Exoc6Q8R313 802 aa12.95□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Zscan21Q07231 555 aa12.95□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Baz1bQ9Z277 1479 aa12.95□□□□□ -0.34
Ubr1-201ENSMUST00000028728 NudcO35685 332 aaKnown RBP12.95□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Spryd3E9Q9B3 442 aa12.94□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Grwd1Q810D6 446 aaKnown RBP12.93□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Pknox2Q8BG99 474 aa12.93□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Erich6bQ9D4S6 220 aa12.93□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Ccdc18Q640L5 1455 aa12.92□□□□□ -0.34
Ubr1-201ENSMUST00000028728 CntlnA2AM05 1397 aa12.92□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Fhad1A6PWD2 1420 aa12.91□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Neurod2Q62414 383 aa12.91□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Fkbp15Q6P9Q6 1216 aaKnown RBP12.91□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Mtus2Q3UHD3 1353 aa12.91□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Ccdc88bQ4QRL3 1481 aa12.91□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Mre11Q61216 706 aa12.9□□□□□ -0.34
Ubr1-201ENSMUST00000028728 Smg6P61406 1418 aaKnown RBP12.89□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Calcoco2A2A6M5 331 aa12.88□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Ubl4bQ9CQ84 188 aa12.88□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Mroh3A0A1D5RM54 893 aa12.88□□□□□ -0.35
Ubr1-201ENSMUST00000028728 HnrnpuQ8VEK3 800 aaKnown RBP12.87□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Fmn1Q05860 1466 aa12.87□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Zfp777B9EKF4 885 aa12.87□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Gm973E9Q295 1059 aa12.87□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Fyco1Q8VDC1 1437 aa12.86□□□□□ -0.35
Ubr1-201ENSMUST00000028728 MccE9PWI3 1003 aa12.86□□□□□ -0.35
Ubr1-201ENSMUST00000028728 VgfQ0VGU4 617 aa12.86□□□□□ -0.35
Ubr1-201ENSMUST00000028728 IqubQ8CDK3 788 aa12.86□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Arhgap35Q91YM2 1499 aa12.86□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Kif15Q6P9L6 1387 aa12.85□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Pkd2O35245 966 aa12.85□□□□□ -0.35
Ubr1-201ENSMUST00000028728 PrkcshO08795 521 aa12.84□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Srpk2O54781 681 aaKnown RBP12.84□□□□□ -0.35
Ubr1-201ENSMUST00000028728 Pdcl3Q8BVF2 240 aa12.84□□□□□ -0.35
Retrieved 100 of 22,080 RNA–protein pairs in 80.6 ms