RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 PFN4Q8NHR9 129 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 CLEC2BQ92478 149 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 TTTY10Q9BZA0 68 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 MRPL35Q9NZE8 188 aaKnown RBP2.33□□□□□ -2.04
NUP88-208ENST00000574087 LINC00474Q9P2X8 69 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 UBR3Q6ZT12 1888 aa2.33□□□□□ -2.04
NUP88-208ENST00000574087 SMIM27A0A1W2PRY6 76 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 TCRBV4S1A1TA0A5B7 111 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 C17orf51A8MQB3 221 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 H7BZZ5 65 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 GNRH2O43555 120 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 HMGN2P05204 90 aaKnown RBP2.32□□□□□ -2.04
NUP88-208ENST00000574087 MGST1P10620 155 aaKnown RBP2.32□□□□□ -2.04
NUP88-208ENST00000574087 RHOHQ15669 191 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 TMEM170BQ5T4T1 132 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 LINC01590Q5TEZ4 76 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 C6orf201Q7Z4U5 140 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 LINC00643Q86TS7 51 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 LYPD6Q86Y78 171 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 SPANXA2-OT1Q8N9U9 137 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 PSENENQ9NZ42 101 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 R4GMQ9 66 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 LCTP09848 1927 aa2.32□□□□□ -2.04
NUP88-208ENST00000574087 ZNF831Q5JPB2 1677 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 IGHV7-4-1A0A0J9YVY3 117 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 HMGA1P17096 107 aaKnown RBP2.31□□□□□ -2.04
NUP88-208ENST00000574087 RBM3P98179 157 aaKnown RBP2.31□□□□□ -2.04
NUP88-208ENST00000574087 ARHGAP5-AS1Q96IT6 56 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 SCGB3A1Q96QR1 104 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 SLC50A1Q9BRV3 221 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 TTTY13Q9BZ97 58 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 PHLDA3Q9Y5J5 127 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 HILPDAQ9Y5L2 63 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 V9GYV3 84 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 MYO9BQ13459 2157 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 PLXNA1Q9UIW2 1896 aa2.31□□□□□ -2.04
NUP88-208ENST00000574087 TRAV13-2A0A0B4J235 113 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 PPYP01298 95 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 IFI6P09912 130 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 CMC4P56277 68 aaPredicted RBP2.3□□□□□ -2.04
NUP88-208ENST00000574087 FXYD7P58549 80 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 KLKP1Q107X0 134 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 SLC48A1Q6P1K1 146 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 TMEM105Q8N8V8 129 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 LINC00304Q8N9R0 145 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 PLXNB2O15031 1838 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 LTBP2Q14767 1821 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 MYO16Q9Y6X6 1858 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 GREB1Q4ZG55 1949 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 NUMA1Q14980 2115 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 BPTFQ12830 3046 aa2.3□□□□□ -2.04
NUP88-208ENST00000574087 PLXNA2O75051 1894 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 COL4A6Q14031 1691 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 IGHV3-21A0A0B4J1V1 117 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 A0A1B0GWA3 101 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 NPYP01303 97 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 IGLV1-51P01701 117 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 ESRGQ1W209 222 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 SPANXN1Q5VSR9 72 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 LINC00269Q8N2A0 174 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 RPRMLQ8N4K4 120 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 TMEM167BQ9NRX6 74 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 NHP2Q9NX24 153 aaKnown RBP2.29□□□□□ -2.04
NUP88-208ENST00000574087 PCNX2A6NKB5 2137 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 THADAQ6YHU6 1953 aa2.29□□□□□ -2.04
NUP88-208ENST00000574087 TNS1Q9HBL0 1735 aaKnown RBP2.28□□□□□ -2.04
NUP88-208ENST00000574087 IGHV3OR16-8A0A075B7F1 116 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 TRAV3A0A0B4J244 114 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 MYMXA0A1B0GTQ4 84 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 C16orf90A8MZG2 172 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 SPINK4O60575 86 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 XCL1P47992 114 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 FXYD4P59646 89 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 UBE2D3P61077 147 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 UBE2D2P62837 147 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 LUZP6Q538Z0 58 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 SPANXN5Q5MJ07 72 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 ADM2Q7Z4H4 148 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 VMO1Q7Z5L0 202 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 CNEP1R1Q8N9A8 125 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 Q8NDZ9 215 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 SMCR5Q8TEV8 140 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 TMEM141Q96I45 108 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 RETNLBQ9BQ08 111 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 CHCHD7Q9BUK0 85 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 LINC00574Q9H8X3 128 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 NDUFA12Q9UI09 145 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 NINQ8N4C6 2090 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 MGAMO43451 1857 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 CPAMD8Q8IZJ3 1885 aa2.28□□□□□ -2.04
NUP88-208ENST00000574087 LOC107984156A0A0G2JMH3 177 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 CXorf51AA0A1B0GTR3 108 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 C19orf71A6NCJ1 209 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 H3BSH0 61 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 IGKV1D-33P01593 117 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 IGKV1-33P01594 117 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 IGHV1-69P01742 117 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 IGKV4-1P06312 121 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 GCHFRP30047 84 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 FXYD2P54710 66 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms