RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 AEBP2Q6ZN18 517 aaPredicted RBP24.93■■□□□ 1.58
NUP88-208ENST00000574087 CHIC1Q5VXU3 224 aa24.48■■□□□ 1.51
NUP88-208ENST00000574087 PHF23Q9BUL5 403 aaPredicted RBP21.57■■□□□ 1.04
NUP88-208ENST00000574087 SENP3Q9H4L4 574 aaPredicted RBP21.1■□□□□ 0.97
NUP88-208ENST00000574087 PLPPR3Q6T4P5 718 aa19.92■□□□□ 0.78
NUP88-208ENST00000574087 FOXD1Q16676 465 aa19.58■□□□□ 0.72
NUP88-208ENST00000574087 PPP6R1Q9UPN7 881 aa18.97■□□□□ 0.63
NUP88-208ENST00000574087 ADRA2BP18089 450 aa18.94■□□□□ 0.62
NUP88-208ENST00000574087 PIAS4Q8N2W9 510 aaPredicted RBP18.47■□□□□ 0.55
NUP88-208ENST00000574087 MSH5O43196 834 aa17.98■□□□□ 0.47
NUP88-208ENST00000574087 PPP4R3CPQ6ZMV5 832 aa17.58■□□□□ 0.4
NUP88-208ENST00000574087 KCNA4P22459 653 aa17.34■□□□□ 0.37
NUP88-208ENST00000574087 SCAF1Q9H7N4 1312 aaKnown RBP17.3■□□□□ 0.36
NUP88-208ENST00000574087 MAPK8IP2Q13387 824 aaPredicted RBP17.15■□□□□ 0.34
NUP88-208ENST00000574087 NCBP3Q53F19 620 aaKnown RBP17.13■□□□□ 0.33
NUP88-208ENST00000574087 CNKSR2Q8WXI2 1034 aa17.05■□□□□ 0.32
NUP88-208ENST00000574087 NPM3O75607 178 aaKnown RBP16.92■□□□□ 0.3
NUP88-208ENST00000574087 DMRT2Q9Y5R5 561 aa16.89■□□□□ 0.29
NUP88-208ENST00000574087 RNF216Q9NWF9 866 aaPredicted RBP16.7■□□□□ 0.26
NUP88-208ENST00000574087 HOXD11P31277 338 aaPredicted RBP16.6■□□□□ 0.25
NUP88-208ENST00000574087 SLC4A1APQ9BWU0 796 aaKnown RBP16.51■□□□□ 0.23
NUP88-208ENST00000574087 DNAJC5BQ9UF47 199 aa16.46■□□□□ 0.23
NUP88-208ENST00000574087 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
NUP88-208ENST00000574087 POTEDQ86YR6 584 aa16.14■□□□□ 0.17
NUP88-208ENST00000574087 DCAF8L1A6NGE4 600 aa16.07■□□□□ 0.16
NUP88-208ENST00000574087 CSRNP3Q8WYN3 585 aa16■□□□□ 0.15
NUP88-208ENST00000574087 ZBTB22O15209 634 aa15.97■□□□□ 0.15
NUP88-208ENST00000574087 SLC4A2P04920 1241 aa15.96■□□□□ 0.15
NUP88-208ENST00000574087 FOXD4L1Q9NU39 408 aa15.91■□□□□ 0.14
NUP88-208ENST00000574087 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.76■□□□□ 0.11
NUP88-208ENST00000574087 MYCNP04198 464 aaPredicted RBP15.61■□□□□ 0.09
NUP88-208ENST00000574087 U3KPZ7 1027 aaPredicted RBP15.57■□□□□ 0.08
NUP88-208ENST00000574087 RNF39Q9H2S5 420 aa15.44■□□□□ 0.06
NUP88-208ENST00000574087 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.39■□□□□ 0.05
NUP88-208ENST00000574087 HNRNPUL2Q1KMD3 747 aaKnown RBP15.39■□□□□ 0.05
NUP88-208ENST00000574087 ATXN8OSP0DMR3 200 aa15.35■□□□□ 0.05
NUP88-208ENST00000574087 SAMD1Q6SPF0 538 aaPredicted RBP15.35■□□□□ 0.05
NUP88-208ENST00000574087 C1QBPQ07021 282 aaKnown RBP15.26■□□□□ 0.03
NUP88-208ENST00000574087 ATF5Q9Y2D1 282 aaPredicted RBP15.21■□□□□ 0.03
NUP88-208ENST00000574087 APLP2Q06481 763 aa15.18■□□□□ 0.02
NUP88-208ENST00000574087 SPINK5Q9NQ38 1064 aaPredicted RBP15.08■□□□□ 0
NUP88-208ENST00000574087 CAPN15O75808 1086 aa14.98□□□□□ -0.01
NUP88-208ENST00000574087 ZNF219Q9P2Y4 722 aaPredicted RBP14.96□□□□□ -0.01
NUP88-208ENST00000574087 TRHP20396 242 aaPredicted RBP14.94□□□□□ -0.02
NUP88-208ENST00000574087 CACNB1Q02641 598 aaPredicted RBP14.89□□□□□ -0.03
NUP88-208ENST00000574087 POLA2Q14181 598 aa14.76□□□□□ -0.05
NUP88-208ENST00000574087 DSG3P32926 999 aa14.75□□□□□ -0.05
NUP88-208ENST00000574087 ABCB7O75027 752 aa14.71□□□□□ -0.05
NUP88-208ENST00000574087 MKRN4PQ13434 485 aaPredicted RBP14.56□□□□□ -0.08
NUP88-208ENST00000574087 FBLN2P98095 1184 aa14.51□□□□□ -0.09
NUP88-208ENST00000574087 ZBTB12Q9Y330 459 aaPredicted RBP14.51□□□□□ -0.09
NUP88-208ENST00000574087 FKBP8Q14318 412 aa14.41□□□□□ -0.1
NUP88-208ENST00000574087 SPDYE4A6NLX3 237 aa14.27□□□□□ -0.13
NUP88-208ENST00000574087 OSCARQ8IYS5 282 aa14.25□□□□□ -0.13
NUP88-208ENST00000574087 SPDYE2BA6NHP3 402 aa14.15□□□□□ -0.14
NUP88-208ENST00000574087 SPDYE6P0CI01 402 aa14.15□□□□□ -0.14
NUP88-208ENST00000574087 SPDYE2Q495Y8 402 aa14.15□□□□□ -0.14
NUP88-208ENST00000574087 PROM2Q8N271 834 aa14.11□□□□□ -0.15
NUP88-208ENST00000574087 ZNF692Q9BU19 519 aaPredicted RBP14.1□□□□□ -0.15
NUP88-208ENST00000574087 SSUH2Q9Y2M2 353 aa14.08□□□□□ -0.16
NUP88-208ENST00000574087 RBM42Q9BTD8 480 aaKnown RBP14.01□□□□□ -0.17
NUP88-208ENST00000574087 PABPN1Q86U42 306 aaKnown RBP eCLIP13.93□□□□□ -0.18
NUP88-208ENST00000574087 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
NUP88-208ENST00000574087 FBXO3Q9UK99 471 aa13.86□□□□□ -0.19
NUP88-208ENST00000574087 REM2Q8IYK8 340 aaPredicted RBP13.76□□□□□ -0.21
NUP88-208ENST00000574087 STAG3Q9UJ98 1225 aa13.72□□□□□ -0.21
NUP88-208ENST00000574087 SPDYE1Q8NFV5 336 aaPredicted RBP13.69□□□□□ -0.22
NUP88-208ENST00000574087 VASPP50552 380 aaPredicted RBP13.68□□□□□ -0.22
NUP88-208ENST00000574087 CLEC11AQ9Y240 323 aa13.6□□□□□ -0.23
NUP88-208ENST00000574087 PITPNM1O00562 1244 aa13.59□□□□□ -0.23
NUP88-208ENST00000574087 IFNLR1Q8IU57 520 aaPredicted RBP13.53□□□□□ -0.24
NUP88-208ENST00000574087 PRR29P0C7W0 189 aa13.51□□□□□ -0.25
NUP88-208ENST00000574087 MIER1Q8N108 512 aa13.49□□□□□ -0.25
NUP88-208ENST00000574087 PLCD3Q8N3E9 789 aa13.48□□□□□ -0.25
NUP88-208ENST00000574087 CREBZFQ9NS37 354 aa13.41□□□□□ -0.26
NUP88-208ENST00000574087 PLEKHG5O94827 1062 aa13.39□□□□□ -0.27
NUP88-208ENST00000574087 AMER1Q5JTC6 1135 aaPredicted RBP13.38□□□□□ -0.27
NUP88-208ENST00000574087 CHRDL2Q6WN34 429 aa13.38□□□□□ -0.27
NUP88-208ENST00000574087 KLHL34Q8N239 644 aa13.37□□□□□ -0.27
NUP88-208ENST00000574087 RTN4Q9NQC3 1192 aaKnown RBP13.36□□□□□ -0.27
NUP88-208ENST00000574087 FXR2P51116 673 aaKnown RBP eCLIP13.34□□□□□ -0.27
NUP88-208ENST00000574087 ZBTB47Q9UFB7 747 aaPredicted RBP13.34□□□□□ -0.27
NUP88-208ENST00000574087 MNX1P50219 401 aaPredicted RBP13.31□□□□□ -0.28
NUP88-208ENST00000574087 SPOCK2Q92563 424 aa13.31□□□□□ -0.28
NUP88-208ENST00000574087 CHADLQ6NUI6 762 aa13.27□□□□□ -0.29
NUP88-208ENST00000574087 PIP4P2Q8N4L2 257 aa13.25□□□□□ -0.29
NUP88-208ENST00000574087 PRKAR2AP13861 404 aaKnown RBP13.24□□□□□ -0.29
NUP88-208ENST00000574087 NUBP1P53384 320 aa13.18□□□□□ -0.3
NUP88-208ENST00000574087 FARP1Q9Y4F1 1045 aaPredicted RBP13.18□□□□□ -0.3
NUP88-208ENST00000574087 NPM1P06748 294 aaKnown RBP eCLIP13.15□□□□□ -0.3
NUP88-208ENST00000574087 PKD2Q13563 968 aa13.13□□□□□ -0.31
NUP88-208ENST00000574087 RASEFQ8IZ41 740 aa13.08□□□□□ -0.32
NUP88-208ENST00000574087 CIZ1Q9ULV3 898 aaPredicted RBP13.05□□□□□ -0.32
NUP88-208ENST00000574087 GSE1Q14687 1217 aa13.04□□□□□ -0.32
NUP88-208ENST00000574087 DCAF8Q5TAQ9 597 aa13.02□□□□□ -0.33
NUP88-208ENST00000574087 FAM212AQ96EL1 285 aa13.02□□□□□ -0.33
NUP88-208ENST00000574087 ECM2O94769 699 aaPredicted RBP12.98□□□□□ -0.33
NUP88-208ENST00000574087 TRIM41Q8WV44 630 aa12.96□□□□□ -0.33
NUP88-208ENST00000574087 TSPYL2Q9H2G4 693 aaPredicted RBP12.94□□□□□ -0.34
NUP88-208ENST00000574087 CHRM1P11229 460 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms