RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 NDUFA11Q86Y39 141 aa13.68□□□□□ -0.22
COL18A1-204ENST00000400337 DSCAML1Q8TD84 2053 aa13.68□□□□□ -0.22
COL18A1-204ENST00000400337 SPATA12Q7Z6I5 190 aa13.67□□□□□ -0.22
COL18A1-204ENST00000400337 CXCL5P42830 114 aa13.66□□□□□ -0.22
COL18A1-204ENST00000400337 CRIP1P50238 77 aa13.66□□□□□ -0.22
COL18A1-204ENST00000400337 Q6ZSV7 163 aa13.66□□□□□ -0.22
COL18A1-204ENST00000400337 ZNF843Q8N446 348 aa13.66□□□□□ -0.22
COL18A1-204ENST00000400337 CEP192Q8TEP8 1941 aa13.65□□□□□ -0.22
COL18A1-204ENST00000400337 C2CD3Q4AC94 2353 aa13.65□□□□□ -0.22
COL18A1-204ENST00000400337 FUSP35637 526 aaKnown RBP eCLIP13.65□□□□□ -0.224e-6■■■□□ 16.8
COL18A1-204ENST00000400337 INAFM1C9JVW0 142 aa13.65□□□□□ -0.23
COL18A1-204ENST00000400337 CLEC2BQ92478 149 aa13.65□□□□□ -0.23
COL18A1-204ENST00000400337 LECT2O14960 151 aa13.64□□□□□ -0.23
COL18A1-204ENST00000400337 PKIGQ9Y2B9 76 aa13.64□□□□□ -0.23
COL18A1-204ENST00000400337 TRAV26-1A0A087WT03 109 aa13.64□□□□□ -0.23
COL18A1-204ENST00000400337 RNASE8Q8TDE3 154 aaKnown RBP13.64□□□□□ -0.23
COL18A1-204ENST00000400337 KIAA1549Q9HCM3 1950 aa13.64□□□□□ -0.23
COL18A1-204ENST00000400337 IGHV4-28A0A0C4DH34 117 aa13.63□□□□□ -0.23
COL18A1-204ENST00000400337 HIST2H2BDQ6DRA6 164 aa13.63□□□□□ -0.23
COL18A1-204ENST00000400337 ZFAND2AQ8N6M9 145 aa13.63□□□□□ -0.23
COL18A1-204ENST00000400337 NFE4Q86UQ8 179 aa13.63□□□□□ -0.23
COL18A1-204ENST00000400337 TLN1Q9Y490 2541 aaKnown RBP13.63□□□□□ -0.23
COL18A1-204ENST00000400337 FAM222AQ5U5X8 452 aa13.63□□□□□ -0.23
COL18A1-204ENST00000400337 A0A0B4J2C4 111 aa13.62□□□□□ -0.23
COL18A1-204ENST00000400337 IGKV3D-7A0A0C4DH55 119 aa13.61□□□□□ -0.23
COL18A1-204ENST00000400337 B5MCH6 92 aa13.61□□□□□ -0.23
COL18A1-204ENST00000400337 NDUFS5O43920 106 aa13.61□□□□□ -0.23
COL18A1-204ENST00000400337 CDSNQ15517 529 aa13.61□□□□□ -0.23
COL18A1-204ENST00000400337 Q8N6K4 173 aa13.61□□□□□ -0.23
COL18A1-204ENST00000400337 LINC00467Q9BRT7 94 aa13.61□□□□□ -0.23
COL18A1-204ENST00000400337 FOXI1Q12951 378 aa13.6□□□□□ -0.23
COL18A1-204ENST00000400337 TM2D2Q9BX73 214 aa13.6□□□□□ -0.23
COL18A1-204ENST00000400337 TANC2Q9HCD6 1990 aa13.6□□□□□ -0.23
COL18A1-204ENST00000400337 TRBV10-2A0A0K0K1G8 114 aa13.6□□□□□ -0.23
COL18A1-204ENST00000400337 MYO9AB2RTY4 2548 aa13.6□□□□□ -0.23
COL18A1-204ENST00000400337 LINC00269Q8N2A0 174 aa13.6□□□□□ -0.23
COL18A1-204ENST00000400337 C11orf45Q8TAV5 145 aa13.59□□□□□ -0.23
COL18A1-204ENST00000400337 CITED1Q99966 193 aa13.59□□□□□ -0.23
COL18A1-204ENST00000400337 IGLV2-11P01706 119 aa13.59□□□□□ -0.23
COL18A1-204ENST00000400337 PSMB8P28062 276 aa13.59□□□□□ -0.23
COL18A1-204ENST00000400337 NEXN-AS1Q8NBZ9 246 aa13.58□□□□□ -0.24
COL18A1-204ENST00000400337 RBM3P98179 157 aaKnown RBP13.58□□□□□ -0.24
COL18A1-204ENST00000400337 A0A0J9YXY3 114 aa13.58□□□□□ -0.24
COL18A1-204ENST00000400337 MIAQ16674 131 aa13.57□□□□□ -0.24
COL18A1-204ENST00000400337 TNRC6BQ9UPQ9 1833 aaKnown RBP13.57□□□□□ -0.24
COL18A1-204ENST00000400337 HIGD2BQ4VC39 106 aa13.57□□□□□ -0.24
COL18A1-204ENST00000400337 IL17DQ8TAD2 202 aa13.57□□□□□ -0.24
COL18A1-204ENST00000400337 DIRC1Q969H9 104 aa13.57□□□□□ -0.24
COL18A1-204ENST00000400337 LINC00482Q8N8I6 264 aa13.57□□□□□ -0.24
COL18A1-204ENST00000400337 ZNF702PQ9H963 129 aa13.57□□□□□ -0.24
COL18A1-204ENST00000400337 CDKN2A-AS1Q9UH64 79 aa13.57□□□□□ -0.24
COL18A1-204ENST00000400337 REG3AQ06141 175 aa13.56□□□□□ -0.24
COL18A1-204ENST00000400337 Q6ZS46 218 aa13.56□□□□□ -0.24
COL18A1-204ENST00000400337 PSMG3-AS1Q96PY0 264 aa13.56□□□□□ -0.24
COL18A1-204ENST00000400337 RNF185Q96GF1 192 aa13.56□□□□□ -0.24
COL18A1-204ENST00000400337 M0QY20 66 aa13.56□□□□□ -0.24
COL18A1-204ENST00000400337 CFAP126Q5VTH2 177 aa13.56□□□□□ -0.24
COL18A1-204ENST00000400337 PTH2Q96A98 100 aa13.56□□□□□ -0.24
COL18A1-204ENST00000400337 SMIM9A6NGZ8 99 aa13.55□□□□□ -0.24
COL18A1-204ENST00000400337 H3BT86 120 aa13.55□□□□□ -0.24
COL18A1-204ENST00000400337 TP73-AS1Q9UF72 201 aa13.55□□□□□ -0.24
COL18A1-204ENST00000400337 LYRM9A8MSI8 78 aa13.55□□□□□ -0.24
COL18A1-204ENST00000400337 UBE2AP49459 152 aa13.55□□□□□ -0.24
COL18A1-204ENST00000400337 KLK5Q9Y337 293 aaPredicted RBP13.55□□□□□ -0.24
COL18A1-204ENST00000400337 PROK1P58294 105 aa13.55□□□□□ -0.24
COL18A1-204ENST00000400337 NREPQ16612 68 aa13.55□□□□□ -0.24
COL18A1-204ENST00000400337 IGLV4-3A0A075B6K6 122 aa13.54□□□□□ -0.24
COL18A1-204ENST00000400337 YPEL4Q96NS1 127 aa13.54□□□□□ -0.24
COL18A1-204ENST00000400337 JMJD7-PLA2G4BH0Y9G9 81 aa13.54□□□□□ -0.24
COL18A1-204ENST00000400337 FAM236AA0A1B0GUQ0 79 aa13.54□□□□□ -0.24
COL18A1-204ENST00000400337 FAM236BA0A1B0GV22 79 aa13.54□□□□□ -0.24
COL18A1-204ENST00000400337 SS18L2Q9UHA2 77 aa13.54□□□□□ -0.24
COL18A1-204ENST00000400337 A0A1B0GX51 115 aa13.53□□□□□ -0.24
COL18A1-204ENST00000400337 H3BQ85 93 aa13.53□□□□□ -0.24
COL18A1-204ENST00000400337 ZNF22P17026 224 aaPredicted RBP13.52□□□□□ -0.24
COL18A1-204ENST00000400337 ARHGAP32A7KAX9 2087 aa13.52□□□□□ -0.24
COL18A1-204ENST00000400337 C18orf65Q6ZTR6 163 aa13.52□□□□□ -0.25
COL18A1-204ENST00000400337 CHCHD10Q8WYQ3 142 aaPredicted RBP13.52□□□□□ -0.25
COL18A1-204ENST00000400337 TCL1BO95988 128 aa13.51□□□□□ -0.25
COL18A1-204ENST00000400337 U3KQK5 164 aa13.51□□□□□ -0.25
COL18A1-204ENST00000400337 HCFC1P51610 2035 aa13.51□□□□□ -0.25
COL18A1-204ENST00000400337 ATOX1O00244 68 aa13.51□□□□□ -0.25
COL18A1-204ENST00000400337 PRR9Q5T870 116 aa13.51□□□□□ -0.25
COL18A1-204ENST00000400337 LINC01006Q8NI28 216 aa13.5□□□□□ -0.25
COL18A1-204ENST00000400337 FAM110AQ9BQ89 295 aa13.5□□□□□ -0.25
COL18A1-204ENST00000400337 G3V4G9 280 aa13.5□□□□□ -0.25
COL18A1-204ENST00000400337 SPANXCQ9NY87 97 aa13.5□□□□□ -0.25
COL18A1-204ENST00000400337 LY6G6DO95868 133 aa13.5□□□□□ -0.25
COL18A1-204ENST00000400337 C11orf21Q9P2W6 132 aa13.5□□□□□ -0.25
COL18A1-204ENST00000400337 TMEM223A0PJW6 202 aa13.49□□□□□ -0.25
COL18A1-204ENST00000400337 RNASE3P12724 160 aaKnown RBP13.49□□□□□ -0.25
COL18A1-204ENST00000400337 TMEM258P61165 79 aa13.49□□□□□ -0.25
COL18A1-204ENST00000400337 IGKV2D-26A0A0A0MRZ7 120 aa13.49□□□□□ -0.25
COL18A1-204ENST00000400337 PRRC2AP48634 2157 aaKnown RBP13.49□□□□□ -0.25
COL18A1-204ENST00000400337 IGKV2-24A0A0C4DH68 120 aa13.49□□□□□ -0.25
COL18A1-204ENST00000400337 DEFB131BA0A096LNP1 70 aa13.48□□□□□ -0.25
COL18A1-204ENST00000400337 TMEM256-PLSCR3K7ERE1 68 aa13.48□□□□□ -0.25
COL18A1-204ENST00000400337 IGLV1-40P01703 118 aa13.48□□□□□ -0.25
COL18A1-204ENST00000400337 UFSP1Q6NVU6 142 aa13.48□□□□□ -0.25
COL18A1-204ENST00000400337 TRBV6-8A0A0A6YYG3 113 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms