RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 GAGE13Q4V321 117 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 C15orf54Q8N8G6 183 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 ATP6V0E2Q8NHE4 81 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 ISOC2Q96AB3 205 aa8.44□□□□□ -1.06
UPF1-203ENST00000594504 NTF3P20783 257 aa8.43□□□□□ -1.06
UPF1-203ENST00000594504 ADIRFQ15847 76 aa8.43□□□□□ -1.06
UPF1-203ENST00000594504 GTSF1Q8WW33 167 aa8.43□□□□□ -1.06
UPF1-203ENST00000594504 MSRB1Q9NZV6 116 aa8.43□□□□□ -1.06
UPF1-203ENST00000594504 KIF25-AS1Q9Y6Z4 181 aa8.43□□□□□ -1.06
UPF1-203ENST00000594504 FAM231BA6NCW3 169 aa8.42□□□□□ -1.06
UPF1-203ENST00000594504 F5H697 171 aa8.42□□□□□ -1.06
UPF1-203ENST00000594504 INAFM2P0DMQ5 153 aa8.42□□□□□ -1.06
UPF1-203ENST00000594504 FOXA3P55318 350 aaPredicted RBP8.42□□□□□ -1.06
UPF1-203ENST00000594504 RPL36AP83881 106 aaKnown RBP8.42□□□□□ -1.06
UPF1-203ENST00000594504 TSKUQ8WUA8 353 aa8.42□□□□□ -1.06
UPF1-203ENST00000594504 RPL36ALQ969Q0 106 aaKnown RBP8.42□□□□□ -1.06
UPF1-203ENST00000594504 GFRA4Q9GZZ7 299 aa8.42□□□□□ -1.06
UPF1-203ENST00000594504 GTSF1LQ9H1H1 148 aa8.42□□□□□ -1.06
UPF1-203ENST00000594504 Q9UF83 564 aa8.42□□□□□ -1.06
UPF1-203ENST00000594504 TRAV9-2A0A087WT02 112 aa8.41□□□□□ -1.06
UPF1-203ENST00000594504 SMR3BP02814 79 aaPredicted RBP8.41□□□□□ -1.06
UPF1-203ENST00000594504 EVI2AP22794 236 aa8.41□□□□□ -1.06
UPF1-203ENST00000594504 HAMPP81172 84 aa8.41□□□□□ -1.06
UPF1-203ENST00000594504 TWIST1Q15672 202 aa8.41□□□□□ -1.06
UPF1-203ENST00000594504 NFE4Q86UQ8 179 aa8.41□□□□□ -1.06
UPF1-203ENST00000594504 OR10G8Q8NGN5 311 aa8.41□□□□□ -1.06
UPF1-203ENST00000594504 DPH3P1Q9H4G8 78 aa8.41□□□□□ -1.06
UPF1-203ENST00000594504 V9GYV3 84 aa8.41□□□□□ -1.06
UPF1-203ENST00000594504 TRBV7-3A0A075B6L6 115 aa8.4□□□□□ -1.06
UPF1-203ENST00000594504 MGPP08493 103 aa8.4□□□□□ -1.06
UPF1-203ENST00000594504 LELP1Q5T871 98 aa8.4□□□□□ -1.06
UPF1-203ENST00000594504 CDPF1Q6NVV7 123 aa8.4□□□□□ -1.06
UPF1-203ENST00000594504 BORCS7Q96B45 105 aa8.4□□□□□ -1.06
UPF1-203ENST00000594504 PGLYRP4Q96LB8 373 aa8.4□□□□□ -1.06
UPF1-203ENST00000594504 A0A087WWC5 75 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 TRAV8-6A0A0B4J262 113 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 HIGD1CA8MV81 97 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 H7C1H1 209 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 K7EP13 123 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 UBE2D3P61077 147 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 UBE2D2P62837 147 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 Q5VSD8 79 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 UQCC3Q6UW78 93 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 SMIM15Q7Z3B0 74 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 NEXN-AS1Q8NBZ9 246 aa8.39□□□□□ -1.07
UPF1-203ENST00000594504 IGHV3-38A0A0C4DH36 116 aa8.38□□□□□ -1.07
UPF1-203ENST00000594504 A0A1B0GUT8 65 aa8.38□□□□□ -1.07
UPF1-203ENST00000594504 M0QY20 66 aa8.38□□□□□ -1.07
UPF1-203ENST00000594504 GCSHP23434 173 aa8.38□□□□□ -1.07
UPF1-203ENST00000594504 OR10J3Q5JRS4 329 aa8.38□□□□□ -1.07
UPF1-203ENST00000594504 SUMO4Q6EEV6 95 aa8.38□□□□□ -1.07
UPF1-203ENST00000594504 PNRC1Q12796 327 aaPredicted RBP8.37□□□□□ -1.07
UPF1-203ENST00000594504 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.37□□□□□ -1.07
UPF1-203ENST00000594504 NAT8BQ9UHF3 227 aa8.37□□□□□ -1.07
UPF1-203ENST00000594504 SMIM27A0A1W2PRY6 76 aa8.36□□□□□ -1.07
UPF1-203ENST00000594504 LRCOL1A6NCL2 159 aa8.36□□□□□ -1.07
UPF1-203ENST00000594504 LINC01556Q5JQF7 62 aa8.36□□□□□ -1.07
UPF1-203ENST00000594504 RASL11AQ6T310 242 aa8.36□□□□□ -1.07
UPF1-203ENST00000594504 C10orf126Q8N4M7 172 aa8.36□□□□□ -1.07
UPF1-203ENST00000594504 NUP35Q8NFH5 326 aa8.36□□□□□ -1.07
UPF1-203ENST00000594504 FRZBQ92765 325 aa8.36□□□□□ -1.07
UPF1-203ENST00000594504 DNAJC30Q96LL9 226 aa8.36□□□□□ -1.07
UPF1-203ENST00000594504 PPP1R2P9O14990 202 aa8.35□□□□□ -1.07
UPF1-203ENST00000594504 IGHV3-30P01768 117 aa8.35□□□□□ -1.07
UPF1-203ENST00000594504 IGHV3-33P01772 117 aa8.35□□□□□ -1.07
UPF1-203ENST00000594504 IGHV3-30-3P0DP02 117 aa8.35□□□□□ -1.07
UPF1-203ENST00000594504 IGHV3-30-5P0DP03 117 aa8.35□□□□□ -1.07
UPF1-203ENST00000594504 RIGQ13278 110 aa8.35□□□□□ -1.07
UPF1-203ENST00000594504 DAZ4Q86SG3 579 aaKnown RBP8.35□□□□□ -1.07
UPF1-203ENST00000594504 DAZ3Q9NR90 486 aaKnown RBP8.35□□□□□ -1.07
UPF1-203ENST00000594504 IGLV5-52A0A0A0MRZ9 124 aa8.34□□□□□ -1.07
UPF1-203ENST00000594504 PSCAO43653 123 aa8.34□□□□□ -1.07
UPF1-203ENST00000594504 TMEM97Q5BJF2 176 aa8.34□□□□□ -1.07
UPF1-203ENST00000594504 COMMD7Q86VX2 200 aa8.34□□□□□ -1.07
UPF1-203ENST00000594504 TMEM191AQ9H0A3 160 aa8.34□□□□□ -1.07
UPF1-203ENST00000594504 Q9HAA7 133 aa8.34□□□□□ -1.07
UPF1-203ENST00000594504 NIT2Q9NQR4 276 aa8.34□□□□□ -1.07
UPF1-203ENST00000594504 TRBV6-8A0A0A6YYG3 113 aa8.33□□□□□ -1.08
UPF1-203ENST00000594504 TMEM218A2RU14 115 aa8.33□□□□□ -1.08
UPF1-203ENST00000594504 IBA57-AS1B1ANH7 110 aa8.33□□□□□ -1.08
UPF1-203ENST00000594504 GATD1Q8NB37 220 aa8.33□□□□□ -1.08
UPF1-203ENST00000594504 TRAV26-2A0A0B4J265 109 aa8.32□□□□□ -1.08
UPF1-203ENST00000594504 A0A1B0GW15 77 aa8.32□□□□□ -1.08
UPF1-203ENST00000594504 LINC00862A6NCI5 91 aa8.32□□□□□ -1.08
UPF1-203ENST00000594504 MT-ND4LP03901 98 aa8.32□□□□□ -1.08
UPF1-203ENST00000594504 ANAPC16Q96DE5 110 aa8.32□□□□□ -1.08
UPF1-203ENST00000594504 FAM30AQ9NZY2 134 aa8.32□□□□□ -1.08
UPF1-203ENST00000594504 F8W036 122 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 ADCYAP1P18509 176 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 KCNIP4Q6PIL6 250 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 NIT1Q86X76 327 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 Q8N3U1 123 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 Q8N814 137 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 CHCHD7Q9BUK0 85 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 SEC11CQ9BY50 192 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 URGCP-MRPS24S4R325 110 aa8.31□□□□□ -1.08
UPF1-203ENST00000594504 WFDC2Q14508 124 aa8.3□□□□□ -1.08
UPF1-203ENST00000594504 NTM-AS1Q6ZSK4 140 aa8.3□□□□□ -1.08
UPF1-203ENST00000594504 MRAP2Q96G30 205 aa8.3□□□□□ -1.08
UPF1-203ENST00000594504 RNF185Q96GF1 192 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms