RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RPL23P62829 140 aaKnown RBP8.74□□□□□ -1.01
VPS28-216ENST00000533806 ISOC2Q96AB3 205 aa8.74□□□□□ -1.01
VPS28-216ENST00000533806 V9GYV3 84 aa8.74□□□□□ -1.01
VPS28-216ENST00000533806 FAM231BA6NCW3 169 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 TRGC1P0CF51 173 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 IFITM2Q01629 132 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 SUMO4Q6EEV6 95 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 NFE4Q86UQ8 179 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 Q8N3U1 123 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 C10orf126Q8N4M7 172 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 TSKUQ8WUA8 353 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 GFRA4Q9GZZ7 299 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 DPH3P1Q9H4G8 78 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 NAT8Q9UHE5 227 aa8.73□□□□□ -1.01
VPS28-216ENST00000533806 TWIST1Q15672 202 aa8.72□□□□□ -1.01
VPS28-216ENST00000533806 NIT1Q86X76 327 aa8.72□□□□□ -1.01
VPS28-216ENST00000533806 TRBV6-8A0A0A6YYG3 113 aa8.71□□□□□ -1.02
VPS28-216ENST00000533806 CLLU1Q5K131 121 aa8.71□□□□□ -1.02
VPS28-216ENST00000533806 NTM-AS1Q6ZSK4 140 aa8.71□□□□□ -1.02
VPS28-216ENST00000533806 PGLYRP4Q96LB8 373 aa8.71□□□□□ -1.02
VPS28-216ENST00000533806 DNAJC30Q96LL9 226 aa8.71□□□□□ -1.02
VPS28-216ENST00000533806 LRP1BQ9NZR2 4599 aa8.71□□□□□ -1.02
VPS28-216ENST00000533806 DNAH5Q8TE73 4624 aa8.71□□□□□ -1.02
VPS28-216ENST00000533806 HIGD1CA8MV81 97 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 H7C1H1 209 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 IGHV3-30P01768 117 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 IGHV3-33P01772 117 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 MGPP08493 103 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 IGHV3-30-3P0DP02 117 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 IGHV3-30-5P0DP03 117 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 LAGE3Q14657 143 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 RASL11AQ6T310 242 aa8.7□□□□□ -1.02
VPS28-216ENST00000533806 DAZ4Q86SG3 579 aaKnown RBP8.7□□□□□ -1.02
VPS28-216ENST00000533806 DAZ3Q9NR90 486 aaKnown RBP8.7□□□□□ -1.02
VPS28-216ENST00000533806 RYR1P21817 5038 aa8.69□□□□□ -1.02
VPS28-216ENST00000533806 RAB14P61106 215 aa8.69□□□□□ -1.02
VPS28-216ENST00000533806 ADIRFQ15847 76 aa8.69□□□□□ -1.02
VPS28-216ENST00000533806 C15orf54Q8N8G6 183 aa8.69□□□□□ -1.02
VPS28-216ENST00000533806 GATD1Q8NB37 220 aa8.69□□□□□ -1.02
VPS28-216ENST00000533806 FRZBQ92765 325 aa8.69□□□□□ -1.02
VPS28-216ENST00000533806 NIT2Q9NQR4 276 aa8.69□□□□□ -1.02
VPS28-216ENST00000533806 A0A1B0GUT8 65 aa8.68□□□□□ -1.02
VPS28-216ENST00000533806 SMIM27A0A1W2PRY6 76 aa8.68□□□□□ -1.02
VPS28-216ENST00000533806 NUP35Q8NFH5 326 aa8.68□□□□□ -1.02
VPS28-216ENST00000533806 CHCHD7Q9BUK0 85 aa8.68□□□□□ -1.02
VPS28-216ENST00000533806 TRAV26-2A0A0B4J265 109 aa8.67□□□□□ -1.02
VPS28-216ENST00000533806 KRTAP10-2P60368 255 aa8.67□□□□□ -1.02
VPS28-216ENST00000533806 TMEM97Q5BJF2 176 aa8.67□□□□□ -1.02
VPS28-216ENST00000533806 TMEM191AQ9H0A3 160 aa8.67□□□□□ -1.02
VPS28-216ENST00000533806 A0A087WTM6 91 aa8.66□□□□□ -1.02
VPS28-216ENST00000533806 LRCOL1A6NCL2 159 aa8.66□□□□□ -1.02
VPS28-216ENST00000533806 IQCJQ1A5X6 159 aa8.66□□□□□ -1.02
VPS28-216ENST00000533806 SPATA12Q7Z6I5 190 aa8.66□□□□□ -1.02
VPS28-216ENST00000533806 NAT8BQ9UHF3 227 aa8.66□□□□□ -1.02
VPS28-216ENST00000533806 SMIM15Q7Z3B0 74 aa8.65□□□□□ -1.02
VPS28-216ENST00000533806 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.65□□□□□ -1.02
VPS28-216ENST00000533806 RNF185Q96GF1 192 aa8.65□□□□□ -1.02
VPS28-216ENST00000533806 TRAV8-3A0A0A6YYJ7 113 aa8.64□□□□□ -1.03
VPS28-216ENST00000533806 TRBV6-5A0A0K0K1A5 114 aa8.64□□□□□ -1.03
VPS28-216ENST00000533806 GAS8-AS1O95177 125 aa8.64□□□□□ -1.03
VPS28-216ENST00000533806 RAB4AP20338 218 aa8.64□□□□□ -1.03
VPS28-216ENST00000533806 MPV17L2Q567V2 206 aa8.64□□□□□ -1.03
VPS28-216ENST00000533806 ATRAIDQ6UW56 229 aa8.64□□□□□ -1.03
VPS28-216ENST00000533806 BORCS7Q96B45 105 aa8.64□□□□□ -1.03
VPS28-216ENST00000533806 Q9HAA7 133 aa8.64□□□□□ -1.03
VPS28-216ENST00000533806 TRBV25-1A0A075B6N4 114 aa8.63□□□□□ -1.03
VPS28-216ENST00000533806 A0A087WX48 190 aa8.63□□□□□ -1.03
VPS28-216ENST00000533806 RIGQ13278 110 aa8.63□□□□□ -1.03
VPS28-216ENST00000533806 MAPKAPK5-AS1Q8N8E1 139 aa8.63□□□□□ -1.03
VPS28-216ENST00000533806 RPL39LQ96EH5 51 aaKnown RBP8.63□□□□□ -1.03
VPS28-216ENST00000533806 KLK12Q9UKR0 248 aa8.63□□□□□ -1.03
VPS28-216ENST00000533806 URGCP-MRPS24S4R325 110 aa8.63□□□□□ -1.03
VPS28-216ENST00000533806 APOBP04114 4563 aaKnown RBP8.63□□□□□ -1.03
VPS28-216ENST00000533806 IGHV1-24A0A0C4DH33 117 aa8.62□□□□□ -1.03
VPS28-216ENST00000533806 C16orf90A8MZG2 172 aa8.62□□□□□ -1.03
VPS28-216ENST00000533806 TMEM262E9PQX1 116 aa8.62□□□□□ -1.03
VPS28-216ENST00000533806 ELOBQ15370 118 aa8.62□□□□□ -1.03
VPS28-216ENST00000533806 ENHOQ6UWT2 76 aa8.62□□□□□ -1.03
VPS28-216ENST00000533806 CHCHD5Q9BSY4 110 aa8.62□□□□□ -1.03
VPS28-216ENST00000533806 PGPEP1Q9NXJ5 209 aa8.62□□□□□ -1.03
VPS28-216ENST00000533806 HSPG2P98160 4391 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 PKIAP61925 76 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 RBX1P62877 108 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 PNRC1Q12796 327 aaPredicted RBP8.61□□□□□ -1.03
VPS28-216ENST00000533806 KCNIP4Q6PIL6 250 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 UQCC3Q6UW78 93 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 AMN1Q8IY45 258 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 Q8N976 141 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 TM2D2Q9BX73 214 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 PRR34Q9NV39 138 aa8.61□□□□□ -1.03
VPS28-216ENST00000533806 A0A1B0GUV1 79 aa8.6□□□□□ -1.03
VPS28-216ENST00000533806 A0A1B0GW15 77 aa8.6□□□□□ -1.03
VPS28-216ENST00000533806 A0A1B0GXF2 115 aa8.6□□□□□ -1.03
VPS28-216ENST00000533806 SDHAF1A6NFY7 115 aa8.6□□□□□ -1.03
VPS28-216ENST00000533806 RPS10P46783 165 aaKnown RBP8.6□□□□□ -1.03
VPS28-216ENST00000533806 GAGE6Q13070 117 aa8.6□□□□□ -1.03
VPS28-216ENST00000533806 WFDC2Q14508 124 aa8.6□□□□□ -1.03
VPS28-216ENST00000533806 DEFB104AQ8WTQ1 72 aa8.6□□□□□ -1.03
VPS28-216ENST00000533806 UBE2WQ96B02 151 aa8.6□□□□□ -1.03
VPS28-216ENST00000533806 MRAP2Q96G30 205 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms