RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TSKUQ8WUA8 353 aa6.99□□□□□ -1.29
VPS28-204ENST00000526054 BORCS7Q96B45 105 aa6.99□□□□□ -1.29
VPS28-204ENST00000526054 BTF3L4Q96K17 158 aa6.99□□□□□ -1.29
VPS28-204ENST00000526054 CNFNQ9BYD5 112 aa6.99□□□□□ -1.29
VPS28-204ENST00000526054 GFRA4Q9GZZ7 299 aa6.99□□□□□ -1.29
VPS28-204ENST00000526054 TRAV9-1A0A075B6T8 112 aa6.98□□□□□ -1.29
VPS28-204ENST00000526054 LOC100131303A0A0U1RQF7 123 aa6.98□□□□□ -1.29
VPS28-204ENST00000526054 FAM231BA6NCW3 169 aa6.98□□□□□ -1.29
VPS28-204ENST00000526054 CDK2AP2O75956 126 aa6.98□□□□□ -1.29
VPS28-204ENST00000526054 C14orf178Q8N769 122 aaPredicted RBP6.98□□□□□ -1.29
VPS28-204ENST00000526054 GTSF1Q8WW33 167 aa6.98□□□□□ -1.29
VPS28-204ENST00000526054 NAT8BQ9UHF3 227 aa6.98□□□□□ -1.29
VPS28-204ENST00000526054 URGCP-MRPS24S4R325 110 aa6.98□□□□□ -1.29
VPS28-204ENST00000526054 F5H697 171 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 MGPP08493 103 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 NTF3P20783 257 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 RAB4BP61018 213 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 ELOBQ15370 118 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 TWIST1Q15672 202 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 ESRGQ1W209 222 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 TTC32Q5I0X7 151 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 Q6ZSN1 163 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 SMIM15Q7Z3B0 74 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 MAPKAPK5-AS1Q8N8E1 139 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 PGLYRP4Q96LB8 373 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 DPH3P1Q9H4G8 78 aa6.97□□□□□ -1.29
VPS28-204ENST00000526054 MRPS16Q9Y3D3 137 aaKnown RBP6.97□□□□□ -1.29
VPS28-204ENST00000526054 TRBV24-1A0A075B6N3 115 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 TRBV10-1A0A0K0K1A3 114 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 GAGE12JA6NER3 117 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 HIGD1CA8MV81 97 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 FOXA3P55318 350 aaPredicted RBP6.96□□□□□ -1.3
VPS28-204ENST00000526054 GAGE1Q13065 139 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 GAGE4Q13068 117 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 GAGE5Q13069 117 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 GAGE13Q4V321 117 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 YPEL4Q96NS1 127 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 UPK3BQ9BT76 320 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 Q9H8V8 135 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 MSRB1Q9NZV6 116 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 DNAH5Q8TE73 4624 aa6.96□□□□□ -1.3
VPS28-204ENST00000526054 TGIF2-C20orf24A0A0A6YYL0 155 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 A0A1B0GUT8 65 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 H7C1H1 209 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 EVI2AP22794 236 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 TIRAPP58753 221 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 RPL36AP83881 106 aaKnown RBP6.95□□□□□ -1.3
VPS28-204ENST00000526054 LYPD5Q6UWN5 251 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 SPATA12Q7Z6I5 190 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.95□□□□□ -1.3
VPS28-204ENST00000526054 NUP35Q8NFH5 326 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 ATP6V0E2Q8NHE4 81 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 RPL36ALQ969Q0 106 aaKnown RBP6.95□□□□□ -1.3
VPS28-204ENST00000526054 KRTAP1-5Q9BYS1 174 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 KIF25-AS1Q9Y6Z4 181 aa6.95□□□□□ -1.3
VPS28-204ENST00000526054 COLCA2A8K830 154 aa6.94□□□□□ -1.3
VPS28-204ENST00000526054 LINC00694P0DN24 101 aa6.94□□□□□ -1.3
VPS28-204ENST00000526054 RIGQ13278 110 aa6.94□□□□□ -1.3
VPS28-204ENST00000526054 ATP5L2Q7Z4Y8 100 aa6.94□□□□□ -1.3
VPS28-204ENST00000526054 TRBV7-3A0A075B6L6 115 aa6.93□□□□□ -1.3
VPS28-204ENST00000526054 LINC00315P59091 139 aa6.93□□□□□ -1.3
VPS28-204ENST00000526054 SUMO4Q6EEV6 95 aa6.93□□□□□ -1.3
VPS28-204ENST00000526054 RASL11AQ6T310 242 aa6.93□□□□□ -1.3
VPS28-204ENST00000526054 GTSF1LQ9H1H1 148 aa6.93□□□□□ -1.3
VPS28-204ENST00000526054 TRAV8-6A0A0B4J262 113 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 A0A1B0GW15 77 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 SIVA1O15304 175 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 S100A8P05109 93 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 RAB5AP20339 215 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 UBE2D3P61077 147 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 UBE2D2P62837 147 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 COX19Q49B96 90 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 LELP1Q5T871 98 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 MRPL54Q6P161 138 aaKnown RBP6.92□□□□□ -1.3
VPS28-204ENST00000526054 NEXN-AS1Q8NBZ9 246 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 DNAJC30Q96LL9 226 aa6.92□□□□□ -1.3
VPS28-204ENST00000526054 M0QY20 66 aa6.91□□□□□ -1.3
VPS28-204ENST00000526054 BTF3P20290 206 aaKnown RBP6.91□□□□□ -1.3
VPS28-204ENST00000526054 HBBP68871 147 aa6.91□□□□□ -1.3
VPS28-204ENST00000526054 OR10J3Q5JRS4 329 aa6.91□□□□□ -1.3
VPS28-204ENST00000526054 Q8N1X5 172 aa6.91□□□□□ -1.3
VPS28-204ENST00000526054 TMEM191AQ9H0A3 160 aa6.91□□□□□ -1.3
VPS28-204ENST00000526054 Q9UF83 564 aa6.91□□□□□ -1.3
VPS28-204ENST00000526054 TNFRSF18Q9Y5U5 241 aa6.91□□□□□ -1.3
VPS28-204ENST00000526054 A0A1B0GXF2 115 aa6.9□□□□□ -1.3
VPS28-204ENST00000526054 MT-ND6P03923 174 aa6.9□□□□□ -1.3
VPS28-204ENST00000526054 RPS10P46783 165 aaKnown RBP6.9□□□□□ -1.3
VPS28-204ENST00000526054 CAMPP49913 170 aa6.9□□□□□ -1.3
VPS28-204ENST00000526054 KRTAP10-2P60368 255 aa6.9□□□□□ -1.3
VPS28-204ENST00000526054 WFDC10BQ8IUB3 73 aa6.9□□□□□ -1.3
VPS28-204ENST00000526054 FRZBQ92765 325 aa6.9□□□□□ -1.3
VPS28-204ENST00000526054 HERC1Q15751 4861 aa6.89□□□□□ -1.31
VPS28-204ENST00000526054 TRAV9-2A0A087WT02 112 aa6.89□□□□□ -1.31
VPS28-204ENST00000526054 HLA-DQA1P01909 254 aa6.89□□□□□ -1.31
VPS28-204ENST00000526054 TMEM97Q5BJF2 176 aa6.89□□□□□ -1.31
VPS28-204ENST00000526054 DAZ4Q86SG3 579 aaKnown RBP6.89□□□□□ -1.31
VPS28-204ENST00000526054 GNB1LQ9BYB4 327 aa6.89□□□□□ -1.31
VPS28-204ENST00000526054 NIT2Q9NQR4 276 aa6.89□□□□□ -1.31
VPS28-204ENST00000526054 DAZ3Q9NR90 486 aaKnown RBP6.89□□□□□ -1.31
VPS28-204ENST00000526054 TRAV26-2A0A0B4J265 109 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms