RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 RYR3Q15413 4870 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 HYDINQ4G0P3 5121 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 KMT2AQ03164 3969 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 A0A087WWL8 130 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 IGHV3-73A0A0B4J1V6 119 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 LCE6AA0A183 80 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 TMEM238LA0A1B0GVL6 79 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 SMIM27A0A1W2PRY6 76 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 LY6G6CO95867 125 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 NTF3P20783 257 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 HBBP68871 147 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 COX19Q49B96 90 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 C14orf178Q8N769 122 aaPredicted RBP5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 SLC25A29Q8N8R3 303 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 TMEM242Q9NWH2 141 aa5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.42□□□□□ -1.54
LIMCH1-222ENST00000515847 TRAV8-6A0A0B4J262 113 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 K7EP13 123 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 CRYGDP07320 174 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 RASL11AQ6T310 242 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 POM121L12Q8N7R1 296 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 NUP35Q8NFH5 326 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 GTSF1Q8WW33 167 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 MRAP2Q96G30 205 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 TMEM191AQ9H0A3 160 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 MRPS16Q9Y3D3 137 aaKnown RBP5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 TNFRSF18Q9Y5U5 241 aa5.41□□□□□ -1.54
LIMCH1-222ENST00000515847 TRBV7-3A0A075B6L6 115 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 TRAV9-2A0A087WT02 112 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 A0A096LPF7 62 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 MUC21A0A0G2JKD1 596 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 MUC21A0A140T8X8 626 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 TCAPO15273 167 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 APOC3P02656 99 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 ADCYAP1P18509 176 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 BTF3P20290 206 aaKnown RBP5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 SSTP61278 116 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 C10orf91Q5T1B1 145 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 UFSP1Q6NVU6 142 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 DAZ4Q86SG3 579 aaKnown RBP5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 C10orf126Q8N4M7 172 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 ATP6V0E2Q8NHE4 81 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 VSIG2Q96IQ7 327 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 UPK3BQ9BT76 320 aa5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 DAZ3Q9NR90 486 aaKnown RBP5.4□□□□□ -1.54
LIMCH1-222ENST00000515847 GAGE12JA6NER3 117 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 PPBPP02775 128 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 EVI2AP22794 236 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 SMAGPQ0VAQ4 97 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 GAGE1Q13065 139 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 GAGE4Q13068 117 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 GAGE5Q13069 117 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 GAGE13Q4V321 117 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 CLRN3Q8NCR9 226 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 SAMD10Q9BYL1 202 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 GTSF1LQ9H1H1 148 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 URGCP-MRPS24S4R325 110 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 MUC4Q99102 2169 aa5.39□□□□□ -1.55
LIMCH1-222ENST00000515847 MT-ND6P03923 174 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 CAMPP49913 170 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 OR10J3Q5JRS4 329 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 LELP1Q5T871 98 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 SUMO4Q6EEV6 95 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 MRPL54Q6P161 138 aaKnown RBP5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 ZNF575Q86XF7 245 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 CHCHD7Q9BUK0 85 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 JPT2Q9H910 190 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 RPS10P5Q9NQ39 176 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 NIT2Q9NQR4 276 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 LAMTOR2Q9Y2Q5 125 aa5.38□□□□□ -1.55
LIMCH1-222ENST00000515847 DNAH10Q8IVF4 4471 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 TRBV25-1A0A075B6N4 114 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 C7orf77A4D0Y5 90 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 PHOX2AO14813 284 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 SIVA1O15304 175 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 NCR2O95944 276 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 HLA-DQA1P01909 254 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 LINC00694P0DN24 101 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 UBE2D3P61077 147 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 UBE2D2P62837 147 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 COTL1Q14019 142 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 ELOBQ15370 118 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 ZNRF2Q8NHG8 242 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 MSRB1Q9NZV6 116 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 KIF25-AS1Q9Y6Z4 181 aa5.37□□□□□ -1.55
LIMCH1-222ENST00000515847 A0A1B0GXF2 115 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 M0QY20 66 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 UBE2L6O14933 153 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 CKS2P33552 79 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 FAM104BQ5XKR9 115 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 LYPD5Q6UWN5 251 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 ORMDL3Q8N138 153 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 GATD1Q8NB37 220 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 NEXN-AS1Q8NBZ9 246 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 KIR2DL4Q99706 377 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 ST20Q9HBF5 79 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 LINC00588Q9Y4M8 146 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 FRAS1Q86XX4 4008 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 NACAE9PAV3 2078 aa5.36□□□□□ -1.55
LIMCH1-222ENST00000515847 DNAH2Q9P225 4427 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms