RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 PHLPP1O60346 1717 aa-0.1□□□□□ -2.43
SCN1A-206ENST00000491429 PBRM1Q86U86 1689 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 TRAV12-2A0A075B6T6 113 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 CXorf51AA0A1B0GTR3 108 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 A0A1B0GW64 132 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 NEFHP12036 1026 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 S100A5P33763 92 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 KRTAP6-1Q3LI64 71 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 SMIM15Q7Z3B0 74 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 SKA2Q8WVK7 121 aaPredicted RBP-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 VPS25Q9BRG1 176 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 BANF2Q9H503 90 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 TAS2R8Q9NYW2 309 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 PKD1P98161 4303 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 MED14O60244 1454 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 ESPL1Q14674 2120 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 KIDINS220Q9ULH0 1771 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 DLEC1Q9Y238 1755 aa-0.11□□□□□ -2.43
SCN1A-206ENST00000491429 TANC1Q9C0D5 1861 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 ARHGAP31Q2M1Z3 1444 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 APOBP04114 4563 aaKnown RBP-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 MCRIP1C9JLW8 97 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 TSTD3H0UI37 97 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 EMX2Q04743 252 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 TMEM244Q5VVB8 128 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 TMEM91Q6ZNR0 172 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 SNX29P2Q8IUI4 249 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 FAM213BQ8TBF2 198 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 DDA1Q9BW61 102 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 DNAJC15Q9Y5T4 150 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 TRRAPQ9Y4A5 3859 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 MGAQ8IWI9 3026 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 NBASA2RRP1 2371 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 CFAP54Q96N23 3096 aa-0.12□□□□□ -2.43
SCN1A-206ENST00000491429 WDR97A6NE52 1622 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 DNAH3Q8TD57 4116 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 PKHD1P08F94 4074 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 F8P00451 2351 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 NINQ8N4C6 2090 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 TCRBV3S1A0A5B6 114 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 SMIM24O75264 130 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 COX6A2Q02221 97 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 SELENOSQ9BQE4 189 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 BPESC1Q9GZL8 116 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 PLECQ15149 4684 aaKnown RBP-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 SOGA1O94964 1423 aa-0.13□□□□□ -2.43
SCN1A-206ENST00000491429 DCHS2Q6V1P9 2916 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 CDH23Q9H251 3354 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 SPTA1P02549 2419 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 DNAH5Q8TE73 4624 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 TRAV36DV7A0A075B6V5 113 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 SLC25A6P12236 298 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 CMPK1P30085 196 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 RPS28P62857 69 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 OR8B8Q15620 311 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 KRTAP20-2Q3LI61 65 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 DYNLRB2Q8TF09 96 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 NOP16Q9Y3C1 178 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 SMG1Q96Q15 3661 aaKnown RBP-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 ACACAQ13085 2346 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 CCDC171Q6TFL3 1326 aa-0.14□□□□□ -2.43
SCN1A-206ENST00000491429 MYH1P12882 1939 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 KDM5CP41229 1560 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 LAMC3Q9Y6N6 1575 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 FRYQ5TBA9 3013 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 GVQW2A0A096LPI5 108 aaPredicted RBP-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 HLA-DRB4P13762 266 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 CLLU1Q5K131 121 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 OR2T2Q6IF00 324 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 CYP2G1PQ6ZSU1 146 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 IFI27L1Q96BM0 104 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 GINS2Q9Y248 185 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 HSPB11Q9Y547 144 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 HLA-DRB4X5D2U9 266 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 SPTBN2O15020 2390 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 ABCA1O95477 2261 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 FRYLO94915 3013 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 LPAP08519 4548 aa-0.15□□□□□ -2.43
SCN1A-206ENST00000491429 XIRP2A4UGR9 3374 aa-0.16□□□□□ -2.43
SCN1A-206ENST00000491429 CENPEQ02224 2701 aa-0.16□□□□□ -2.43
SCN1A-206ENST00000491429 BORCS7-ASMTA0A0B4J1R7 106 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 TRAV2A0A0B4J234 112 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 RBAKDNA6NC62 111 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 TNFSF15O95150 251 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 RBP4P02753 201 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 NMBP08949 121 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 TCTE3Q8IZS6 198 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 U3KQA8 63 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 DMXL1Q9Y485 3027 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 PRUNE2Q8WUY3 3088 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 SETBP1Q9Y6X0 1596 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 PKHD1L1Q86WI1 4243 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 HTTP42858 3142 aa-0.16□□□□□ -2.44
SCN1A-206ENST00000491429 SPAG17Q6Q759 2223 aa-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 SACSQ9NZJ4 4579 aa-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 A0A1B0GX51 115 aa-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 DEGS1O15121 323 aa-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 COX4I1P13073 169 aa-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.17□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms