RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 AEBP2Q6ZN18 517 aaPredicted RBP33.36■■■□□ 2.93
SCN1A-206ENST00000491429 CHIC1Q5VXU3 224 aa31.6■■■□□ 2.65
SCN1A-206ENST00000491429 SENP3Q9H4L4 574 aaPredicted RBP28.37■■■□□ 2.13
SCN1A-206ENST00000491429 PHF23Q9BUL5 403 aaPredicted RBP28.03■■■□□ 2.08
SCN1A-206ENST00000491429 FOXD1Q16676 465 aa26.5■■□□□ 1.83
SCN1A-206ENST00000491429 PLPPR3Q6T4P5 718 aa25.21■■□□□ 1.63
SCN1A-206ENST00000491429 PPP6R1Q9UPN7 881 aa24.8■■□□□ 1.56
SCN1A-206ENST00000491429 PIAS4Q8N2W9 510 aaPredicted RBP24.75■■□□□ 1.55
SCN1A-206ENST00000491429 MSH5O43196 834 aa24.74■■□□□ 1.55
SCN1A-206ENST00000491429 ADRA2BP18089 450 aa24.71■■□□□ 1.55
SCN1A-206ENST00000491429 POTEDQ86YR6 584 aa24.24■■□□□ 1.47
SCN1A-206ENST00000491429 MAPK8IP2Q13387 824 aaPredicted RBP22.72■■□□□ 1.23
SCN1A-206ENST00000491429 DMRT2Q9Y5R5 561 aa22.51■■□□□ 1.19
SCN1A-206ENST00000491429 SCAF1Q9H7N4 1312 aaKnown RBP22.5■■□□□ 1.19
SCN1A-206ENST00000491429 PPP4R3CPQ6ZMV5 832 aa22.13■■□□□ 1.13
SCN1A-206ENST00000491429 CNKSR2Q8WXI2 1034 aa21.69■■□□□ 1.06
SCN1A-206ENST00000491429 HOXD11P31277 338 aaPredicted RBP21.67■■□□□ 1.06
SCN1A-206ENST00000491429 DCAF8L1A6NGE4 600 aa21.62■■□□□ 1.05
SCN1A-206ENST00000491429 RNF216Q9NWF9 866 aaPredicted RBP21.49■■□□□ 1.03
SCN1A-206ENST00000491429 CACNB1Q02641 598 aaPredicted RBP21.28■■□□□ 1
SCN1A-206ENST00000491429 NCBP3Q53F19 620 aaKnown RBP21.22■□□□□ 0.99
SCN1A-206ENST00000491429 RNF39Q9H2S5 420 aa21.15■□□□□ 0.98
SCN1A-206ENST00000491429 NPM3O75607 178 aaKnown RBP20.98■□□□□ 0.95
SCN1A-206ENST00000491429 DNAJC5BQ9UF47 199 aa20.86■□□□□ 0.93
SCN1A-206ENST00000491429 C1QBPQ07021 282 aaKnown RBP20.79■□□□□ 0.92
SCN1A-206ENST00000491429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.66■□□□□ 0.9
SCN1A-206ENST00000491429 KCNA4P22459 653 aa20.59■□□□□ 0.89
SCN1A-206ENST00000491429 U3KPZ7 1027 aaPredicted RBP20.25■□□□□ 0.83
SCN1A-206ENST00000491429 SLC4A2P04920 1241 aa20.06■□□□□ 0.8
SCN1A-206ENST00000491429 SPINK5Q9NQ38 1064 aaPredicted RBP19.98■□□□□ 0.79
SCN1A-206ENST00000491429 CAPN15O75808 1086 aa19.92■□□□□ 0.78
SCN1A-206ENST00000491429 DSG3P32926 999 aa19.81■□□□□ 0.76
SCN1A-206ENST00000491429 TRHP20396 242 aaPredicted RBP19.6■□□□□ 0.73
SCN1A-206ENST00000491429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.57■□□□□ 0.72
SCN1A-206ENST00000491429 APLP2Q06481 763 aa19.57■□□□□ 0.72
SCN1A-206ENST00000491429 HNRNPUL2Q1KMD3 747 aaKnown RBP19.57■□□□□ 0.72
SCN1A-206ENST00000491429 ZNF219Q9P2Y4 722 aaPredicted RBP19.51■□□□□ 0.71
SCN1A-206ENST00000491429 ABCB7O75027 752 aa19.49■□□□□ 0.71
SCN1A-206ENST00000491429 SAMD1Q6SPF0 538 aaPredicted RBP19.49■□□□□ 0.71
SCN1A-206ENST00000491429 SLC4A1APQ9BWU0 796 aaKnown RBP19.4■□□□□ 0.7
SCN1A-206ENST00000491429 MYCNP04198 464 aaPredicted RBP19.36■□□□□ 0.69
SCN1A-206ENST00000491429 FOXD4L1Q9NU39 408 aa19.17■□□□□ 0.66
SCN1A-206ENST00000491429 POLA2Q14181 598 aa19.06■□□□□ 0.64
SCN1A-206ENST00000491429 ATF5Q9Y2D1 282 aaPredicted RBP19.01■□□□□ 0.63
SCN1A-206ENST00000491429 POTEHQ6S545 545 aa18.98■□□□□ 0.63
SCN1A-206ENST00000491429 ZBTB22O15209 634 aa18.96■□□□□ 0.63
SCN1A-206ENST00000491429 RBM42Q9BTD8 480 aaKnown RBP18.83■□□□□ 0.6
SCN1A-206ENST00000491429 ZBTB12Q9Y330 459 aaPredicted RBP18.6■□□□□ 0.57
SCN1A-206ENST00000491429 ATXN8OSP0DMR3 200 aa18.54■□□□□ 0.56
SCN1A-206ENST00000491429 OSCARQ8IYS5 282 aa18.49■□□□□ 0.55
SCN1A-206ENST00000491429 CHRDL2Q6WN34 429 aa18.48■□□□□ 0.55
SCN1A-206ENST00000491429 AKT1S1Q96B36 256 aa18.42■□□□□ 0.54
SCN1A-206ENST00000491429 REM2Q8IYK8 340 aaPredicted RBP18.29■□□□□ 0.52
SCN1A-206ENST00000491429 FBLN2P98095 1184 aa18.17■□□□□ 0.5
SCN1A-206ENST00000491429 PITPNM1O00562 1244 aa18.11■□□□□ 0.49
SCN1A-206ENST00000491429 MKRN4PQ13434 485 aaPredicted RBP18.11■□□□□ 0.49
SCN1A-206ENST00000491429 SPDYE2BA6NHP3 402 aa18.06■□□□□ 0.48
SCN1A-206ENST00000491429 SPDYE6P0CI01 402 aa18.06■□□□□ 0.48
SCN1A-206ENST00000491429 SPDYE2Q495Y8 402 aa18.06■□□□□ 0.48
SCN1A-206ENST00000491429 PIP4P2Q8N4L2 257 aa18.06■□□□□ 0.48
SCN1A-206ENST00000491429 CSRNP3Q8WYN3 585 aa18.03■□□□□ 0.48
SCN1A-206ENST00000491429 FXR2P51116 673 aaKnown RBP eCLIP17.93■□□□□ 0.46
SCN1A-206ENST00000491429 ZNF692Q9BU19 519 aaPredicted RBP17.87■□□□□ 0.45
SCN1A-206ENST00000491429 SSUH2Q9Y2M2 353 aa17.84■□□□□ 0.45
SCN1A-206ENST00000491429 EHMT2Q96KQ7 1210 aa17.82■□□□□ 0.44
SCN1A-206ENST00000491429 SP7Q8TDD2 431 aaPredicted RBP17.78■□□□□ 0.44
SCN1A-206ENST00000491429 CLEC11AQ9Y240 323 aa17.76■□□□□ 0.43
SCN1A-206ENST00000491429 SPDYE1Q8NFV5 336 aaPredicted RBP17.75■□□□□ 0.43
SCN1A-206ENST00000491429 HAX1O00165 279 aa17.72■□□□□ 0.43
SCN1A-206ENST00000491429 PRKAR2AP13861 404 aaKnown RBP17.63■□□□□ 0.41
SCN1A-206ENST00000491429 PABPN1Q86U42 306 aaKnown RBP eCLIP17.62■□□□□ 0.41
SCN1A-206ENST00000491429 EVX2Q03828 476 aa17.56■□□□□ 0.4
SCN1A-206ENST00000491429 CHADLQ6NUI6 762 aa17.46■□□□□ 0.39
SCN1A-206ENST00000491429 PRR29P0C7W0 189 aa17.44■□□□□ 0.38
SCN1A-206ENST00000491429 C19orf67A6NJJ6 358 aa17.36■□□□□ 0.37
SCN1A-206ENST00000491429 SPDYE4A6NLX3 237 aa17.21■□□□□ 0.35
SCN1A-206ENST00000491429 FARP1Q9Y4F1 1045 aaPredicted RBP17.16■□□□□ 0.34
SCN1A-206ENST00000491429 GABBR2O75899 941 aa17.12■□□□□ 0.33
SCN1A-206ENST00000491429 CD44P16070 742 aaKnown RBP17.06■□□□□ 0.32
SCN1A-206ENST00000491429 STAG3Q9UJ98 1225 aa17.06■□□□□ 0.32
SCN1A-206ENST00000491429 CREBZFQ9NS37 354 aa17.04■□□□□ 0.32
SCN1A-206ENST00000491429 ZRANB1Q9UGI0 708 aa16.82■□□□□ 0.28
SCN1A-206ENST00000491429 PROM2Q8N271 834 aa16.79■□□□□ 0.28
SCN1A-206ENST00000491429 ZNF579Q8NAF0 562 aaKnown RBP16.79■□□□□ 0.28
SCN1A-206ENST00000491429 POTEIP0CG38 1075 aa16.78■□□□□ 0.28
SCN1A-206ENST00000491429 MNX1P50219 401 aaPredicted RBP16.75■□□□□ 0.27
SCN1A-206ENST00000491429 CLCN6P51797 869 aa16.73■□□□□ 0.27
SCN1A-206ENST00000491429 LHX8Q68G74 356 aa16.68■□□□□ 0.26
SCN1A-206ENST00000491429 NPM1P06748 294 aaKnown RBP eCLIP16.66■□□□□ 0.26
SCN1A-206ENST00000491429 GALR2O43603 387 aaPredicted RBP16.62■□□□□ 0.25
SCN1A-206ENST00000491429 PAK3O75914 559 aaPredicted RBP16.62■□□□□ 0.25
SCN1A-206ENST00000491429 DCBLD2Q96PD2 775 aa16.62■□□□□ 0.25
SCN1A-206ENST00000491429 PHF12Q96QT6 1004 aa16.62■□□□□ 0.25
SCN1A-206ENST00000491429 TSPYL2Q9H2G4 693 aaPredicted RBP16.43■□□□□ 0.22
SCN1A-206ENST00000491429 MIER1Q8N108 512 aa16.41■□□□□ 0.22
SCN1A-206ENST00000491429 MS4A3Q96HJ5 214 aa16.38■□□□□ 0.21
SCN1A-206ENST00000491429 FKBP8Q14318 412 aa16.35■□□□□ 0.21
SCN1A-206ENST00000491429 PLEKHG5O94827 1062 aa16.34■□□□□ 0.21
SCN1A-206ENST00000491429 CCDC61Q9Y6R9 512 aa16.34■□□□□ 0.21
SCN1A-206ENST00000491429 PELP1Q8IZL8 1130 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms