RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 TRAV22A0A0B4J277 110 aa-0.58□□□□□ -2.5
VPS50-217ENST00000485140 TNFSF15O95150 251 aa-0.58□□□□□ -2.5
VPS50-217ENST00000485140 EDDM3BP56851 147 aa-0.58□□□□□ -2.5
VPS50-217ENST00000485140 SPANXA1Q9NS26 97 aa-0.58□□□□□ -2.5
VPS50-217ENST00000485140 APC2O95996 2303 aa-0.59□□□□□ -2.5
VPS50-217ENST00000485140 XIRP1Q702N8 1843 aaKnown RBP-0.59□□□□□ -2.5
VPS50-217ENST00000485140 GOLGA3Q08378 1498 aa-0.59□□□□□ -2.5
VPS50-217ENST00000485140 TRAV1-2A0A0B4J238 106 aa-0.59□□□□□ -2.5
VPS50-217ENST00000485140 A6NIN4 97 aa-0.59□□□□□ -2.5
VPS50-217ENST00000485140 RPL7L1Q6DKI1 246 aaKnown RBP-0.59□□□□□ -2.5
VPS50-217ENST00000485140 Q8IZM0 81 aa-0.59□□□□□ -2.5
VPS50-217ENST00000485140 RPRMQ9NS64 109 aa-0.59□□□□□ -2.5
VPS50-217ENST00000485140 BSNQ9UPA5 3926 aa-0.59□□□□□ -2.5
VPS50-217ENST00000485140 PDZD2O15018 2839 aa-0.6□□□□□ -2.5
VPS50-217ENST00000485140 MAP1BP46821 2468 aaKnown RBP-0.6□□□□□ -2.51
VPS50-217ENST00000485140 G3V318 75 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 NCS1P62166 190 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 SPAG11BQ08648 103 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 CCDC153Q494R4 210 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 SPANXN1Q5VSR9 72 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 LINC01545Q5VT33 79 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 WFDC6Q9BQY6 131 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 SAR1AQ9NR31 198 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 NDUFA12Q9UI09 145 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 HIGD1AQ9Y241 93 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 GINS2Q9Y248 185 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 LSM2Q9Y333 95 aaKnown RBP-0.6□□□□□ -2.51
VPS50-217ENST00000485140 SPCS1Q9Y6A9 102 aa-0.6□□□□□ -2.51
VPS50-217ENST00000485140 USH2AO75445 5202 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 PPRC1Q5VV67 1664 aaKnown RBP-0.61□□□□□ -2.51
VPS50-217ENST00000485140 TRBV20-1A0A075B6N2 111 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 FAM92AA1XBS5 289 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 NPFFO15130 113 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 IFNA17P01571 189 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 DBIP07108 87 aaKnown RBP-0.61□□□□□ -2.51
VPS50-217ENST00000485140 Q5VV11 94 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 MMGT1Q8N4V1 131 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 VSTM2AQ8TAG5 236 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 FAT2Q9NYQ8 4349 aa-0.61□□□□□ -2.51
VPS50-217ENST00000485140 SPTBN1Q01082 2364 aaKnown RBP-0.61□□□□□ -2.51
VPS50-217ENST00000485140 PLCE1Q9P212 2302 aa-0.62□□□□□ -2.51
VPS50-217ENST00000485140 APOC4-APOC2K7ER74 178 aa-0.62□□□□□ -2.51
VPS50-217ENST00000485140 S100A3P33764 101 aa-0.62□□□□□ -2.51
VPS50-217ENST00000485140 CTAGE3PQ8IX95 158 aa-0.62□□□□□ -2.51
VPS50-217ENST00000485140 IBTKQ9P2D0 1353 aaPredicted RBP-0.62□□□□□ -2.51
VPS50-217ENST00000485140 ZNF609O15014 1411 aa-0.63□□□□□ -2.51
VPS50-217ENST00000485140 UBR4Q5T4S7 5183 aa-0.63□□□□□ -2.51
VPS50-217ENST00000485140 PRM1P04553 51 aa-0.63□□□□□ -2.51
VPS50-217ENST00000485140 SPRR1AP35321 89 aa-0.63□□□□□ -2.51
VPS50-217ENST00000485140 C9orf116Q5BN46 136 aaPredicted RBP-0.63□□□□□ -2.51
VPS50-217ENST00000485140 BAGE3Q86Y29 109 aa-0.63□□□□□ -2.51
VPS50-217ENST00000485140 NPVFQ9HCQ7 196 aa-0.63□□□□□ -2.51
VPS50-217ENST00000485140 ERCC6Q03468 1493 aa-0.63□□□□□ -2.51
VPS50-217ENST00000485140 COL6A3P12111 3177 aa-0.63□□□□□ -2.51
VPS50-217ENST00000485140 HERC1Q15751 4861 aa-0.64□□□□□ -2.51
VPS50-217ENST00000485140 ARFGEF1Q9Y6D6 1849 aa-0.64□□□□□ -2.51
VPS50-217ENST00000485140 SIPA1L3O60292 1781 aaPredicted RBP-0.64□□□□□ -2.51
VPS50-217ENST00000485140 PIRTP0C851 137 aa-0.64□□□□□ -2.51
VPS50-217ENST00000485140 KIAA1109Q2LD37 5005 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 WNK1Q9H4A3 2382 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 UBE2D1P51668 147 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 CFAP126Q5VTH2 177 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 SELENOSQ9BQE4 189 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 ACANP16112 2415 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 ZMYM4Q5VZL5 1548 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 DAPK1P53355 1430 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 NF1P21359 2839 aa-0.65□□□□□ -2.51
VPS50-217ENST00000485140 MAP1AP78559 2803 aaPredicted RBP-0.65□□□□□ -2.51
VPS50-217ENST00000485140 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.66□□□□□ -2.51
VPS50-217ENST00000485140 HERC2O95714 4834 aa-0.66□□□□□ -2.51
VPS50-217ENST00000485140 RYR1P21817 5038 aa-0.66□□□□□ -2.52
VPS50-217ENST00000485140 NEFHP12036 1026 aa-0.66□□□□□ -2.52
VPS50-217ENST00000485140 PIPP12273 146 aaPredicted RBP-0.66□□□□□ -2.52
VPS50-217ENST00000485140 MT4P47944 62 aa-0.66□□□□□ -2.52
VPS50-217ENST00000485140 MORN2Q502X0 79 aa-0.66□□□□□ -2.52
VPS50-217ENST00000485140 ZNF818PQ6ZRF7 136 aa-0.66□□□□□ -2.52
VPS50-217ENST00000485140 SCN3BQ9NY72 215 aa-0.66□□□□□ -2.52
VPS50-217ENST00000485140 CSPG4Q6UVK1 2322 aa-0.66□□□□□ -2.52
VPS50-217ENST00000485140 SETXQ7Z333 2677 aaKnown RBP-0.67□□□□□ -2.52
VPS50-217ENST00000485140 RNF213Q63HN8 5207 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 MYH13Q9UKX3 1938 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 GNG14A0A1W2PPG7 69 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 H0YJX3 145 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 S100A5P33763 92 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 DCDP81605 110 aaKnown RBP-0.67□□□□□ -2.52
VPS50-217ENST00000485140 MIC13Q5XKP0 118 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 C10orf82Q8WW14 230 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 PSMG3Q9BT73 122 aaPredicted RBP-0.67□□□□□ -2.52
VPS50-217ENST00000485140 WNK3Q9BYP7 1800 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 IFT172Q9UG01 1749 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 SPTA1P02549 2419 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 CREBBPQ92793 2442 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 LRRC37A3O60309 1634 aa-0.67□□□□□ -2.52
VPS50-217ENST00000485140 FLNBO75369 2602 aaKnown RBP-0.68□□□□□ -2.52
VPS50-217ENST00000485140 UBE2G1P62253 170 aa-0.68□□□□□ -2.52
VPS50-217ENST00000485140 FAT1Q14517 4588 aa-0.68□□□□□ -2.52
VPS50-217ENST00000485140 LRP1BQ9NZR2 4599 aa-0.68□□□□□ -2.52
VPS50-217ENST00000485140 NBEAL1Q6ZS30 2694 aa-0.68□□□□□ -2.52
VPS50-217ENST00000485140 MUC22E2RYF6 1773 aaPredicted RBP-0.68□□□□□ -2.52
VPS50-217ENST00000485140 HYDINQ4G0P3 5121 aa-0.69□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms