RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 TNFRSF18Q9Y5U5 241 aa12.14□□□□□ -0.47
HDAC6-225ENST00000483506 FAM231BA6NCW3 169 aa12.12□□□□□ -0.47
HDAC6-225ENST00000483506 H7C1H1 209 aa12.12□□□□□ -0.47
HDAC6-225ENST00000483506 LAGE3Q14657 143 aa12.12□□□□□ -0.47
HDAC6-225ENST00000483506 TMEM241Q24JQ0 296 aa12.12□□□□□ -0.47
HDAC6-225ENST00000483506 SUMO4Q6EEV6 95 aa12.12□□□□□ -0.47
HDAC6-225ENST00000483506 GFRA4Q9GZZ7 299 aa12.12□□□□□ -0.47
HDAC6-225ENST00000483506 MGPP08493 103 aa12.11□□□□□ -0.47
HDAC6-225ENST00000483506 TWIST1Q15672 202 aa12.11□□□□□ -0.47
HDAC6-225ENST00000483506 TSKUQ8WUA8 353 aa12.11□□□□□ -0.47
HDAC6-225ENST00000483506 ISOC2Q96AB3 205 aa12.11□□□□□ -0.47
HDAC6-225ENST00000483506 DNAJC30Q96LL9 226 aa12.11□□□□□ -0.47
HDAC6-225ENST00000483506 NAT8Q9UHE5 227 aa12.11□□□□□ -0.47
HDAC6-225ENST00000483506 IGHV3-30P01768 117 aa12.1□□□□□ -0.47
HDAC6-225ENST00000483506 IGHV3-33P01772 117 aa12.1□□□□□ -0.47
HDAC6-225ENST00000483506 IGHV3-30-3P0DP02 117 aa12.1□□□□□ -0.47
HDAC6-225ENST00000483506 IGHV3-30-5P0DP03 117 aa12.1□□□□□ -0.47
HDAC6-225ENST00000483506 RPL23P62829 140 aaKnown RBP12.1□□□□□ -0.47
HDAC6-225ENST00000483506 DAZ4Q86SG3 579 aaKnown RBP12.1□□□□□ -0.47
HDAC6-225ENST00000483506 NIT1Q86X76 327 aa12.1□□□□□ -0.47
HDAC6-225ENST00000483506 Q8N3U1 123 aa12.1□□□□□ -0.47
HDAC6-225ENST00000483506 CHCHD7Q9BUK0 85 aa12.1□□□□□ -0.47
HDAC6-225ENST00000483506 DAZ3Q9NR90 486 aaKnown RBP12.1□□□□□ -0.47
HDAC6-225ENST00000483506 TRBV6-8A0A0A6YYG3 113 aa12.09□□□□□ -0.47
HDAC6-225ENST00000483506 C15orf54Q8N8G6 183 aa12.09□□□□□ -0.47
HDAC6-225ENST00000483506 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.09□□□□□ -0.47
HDAC6-225ENST00000483506 V9GYV3 84 aa12.09□□□□□ -0.47
HDAC6-225ENST00000483506 TMEM97Q5BJF2 176 aa12.08□□□□□ -0.48
HDAC6-225ENST00000483506 RASL11AQ6T310 242 aa12.08□□□□□ -0.48
HDAC6-225ENST00000483506 FRZBQ92765 325 aa12.08□□□□□ -0.48
HDAC6-225ENST00000483506 PGLYRP4Q96LB8 373 aa12.08□□□□□ -0.48
HDAC6-225ENST00000483506 HIGD1CA8MV81 97 aa12.07□□□□□ -0.48
HDAC6-225ENST00000483506 DNAH5Q8TE73 4624 aa12.06□□□□□ -0.48
HDAC6-225ENST00000483506 RAB14P61106 215 aa12.06□□□□□ -0.48
HDAC6-225ENST00000483506 ADIRFQ15847 76 aa12.06□□□□□ -0.48
HDAC6-225ENST00000483506 NTM-AS1Q6ZSK4 140 aa12.06□□□□□ -0.48
HDAC6-225ENST00000483506 NIT2Q9NQR4 276 aa12.06□□□□□ -0.48
HDAC6-225ENST00000483506 LRP1BQ9NZR2 4599 aa12.06□□□□□ -0.48
HDAC6-225ENST00000483506 KIAA1109Q2LD37 5005 aa12.05□□□□□ -0.48
HDAC6-225ENST00000483506 A0A087WTM6 91 aa12.05□□□□□ -0.48
HDAC6-225ENST00000483506 A0A1B0GUT8 65 aa12.05□□□□□ -0.48
HDAC6-225ENST00000483506 CLLU1Q5K131 121 aa12.05□□□□□ -0.48
HDAC6-225ENST00000483506 SMIM15Q7Z3B0 74 aa12.05□□□□□ -0.48
HDAC6-225ENST00000483506 SPATA12Q7Z6I5 190 aa12.05□□□□□ -0.48
HDAC6-225ENST00000483506 URGCP-MRPS24S4R325 110 aa12.05□□□□□ -0.48
HDAC6-225ENST00000483506 HERC2O95714 4834 aa12.04□□□□□ -0.48
HDAC6-225ENST00000483506 TRAV8-3A0A0A6YYJ7 113 aa12.04□□□□□ -0.48
HDAC6-225ENST00000483506 KRTAP10-2P60368 255 aa12.04□□□□□ -0.48
HDAC6-225ENST00000483506 GATD1Q8NB37 220 aa12.04□□□□□ -0.48
HDAC6-225ENST00000483506 BORCS7Q96B45 105 aa12.04□□□□□ -0.48
HDAC6-225ENST00000483506 C16orf90A8MZG2 172 aa12.03□□□□□ -0.48
HDAC6-225ENST00000483506 PKIAP61925 76 aa12.03□□□□□ -0.48
HDAC6-225ENST00000483506 IQCJQ1A5X6 159 aa12.03□□□□□ -0.48
HDAC6-225ENST00000483506 A0A087WX48 190 aa12.02□□□□□ -0.49
HDAC6-225ENST00000483506 EREGO14944 169 aa12.02□□□□□ -0.49
HDAC6-225ENST00000483506 IFITM2Q01629 132 aa12.02□□□□□ -0.49
HDAC6-225ENST00000483506 ELOBQ15370 118 aa12.02□□□□□ -0.49
HDAC6-225ENST00000483506 NUP35Q8NFH5 326 aa12.02□□□□□ -0.49
HDAC6-225ENST00000483506 TMEM191AQ9H0A3 160 aa12.02□□□□□ -0.49
HDAC6-225ENST00000483506 Q9HAA7 133 aa12.02□□□□□ -0.49
HDAC6-225ENST00000483506 TRBV25-1A0A075B6N4 114 aa12.01□□□□□ -0.49
HDAC6-225ENST00000483506 TRAV26-2A0A0B4J265 109 aa12.01□□□□□ -0.49
HDAC6-225ENST00000483506 SMIM27A0A1W2PRY6 76 aa12.01□□□□□ -0.49
HDAC6-225ENST00000483506 LRCOL1A6NCL2 159 aa12.01□□□□□ -0.49
HDAC6-225ENST00000483506 KCNIP4Q6PIL6 250 aa12.01□□□□□ -0.49
HDAC6-225ENST00000483506 TM2D2Q9BX73 214 aa12.01□□□□□ -0.49
HDAC6-225ENST00000483506 NAT8BQ9UHF3 227 aa12.01□□□□□ -0.49
HDAC6-225ENST00000483506 IGHV1-24A0A0C4DH33 117 aa12□□□□□ -0.49
HDAC6-225ENST00000483506 CHCHD5Q9BSY4 110 aa12□□□□□ -0.49
HDAC6-225ENST00000483506 KLK12Q9UKR0 248 aa12□□□□□ -0.49
HDAC6-225ENST00000483506 PSCAO43653 123 aa11.99□□□□□ -0.49
HDAC6-225ENST00000483506 RIGQ13278 110 aa11.99□□□□□ -0.49
HDAC6-225ENST00000483506 MPV17L2Q567V2 206 aa11.99□□□□□ -0.49
HDAC6-225ENST00000483506 CDPF1Q6NVV7 123 aa11.99□□□□□ -0.49
HDAC6-225ENST00000483506 ATRAIDQ6UW56 229 aa11.99□□□□□ -0.49
HDAC6-225ENST00000483506 PGPEP1Q9NXJ5 209 aa11.99□□□□□ -0.49
HDAC6-225ENST00000483506 TMEM262E9PQX1 116 aa11.98□□□□□ -0.49
HDAC6-225ENST00000483506 RNF185Q96GF1 192 aa11.98□□□□□ -0.49
HDAC6-225ENST00000483506 COX11Q9Y6N1 276 aa11.98□□□□□ -0.49
HDAC6-225ENST00000483506 TRBV6-5A0A0K0K1A5 114 aa11.97□□□□□ -0.49
HDAC6-225ENST00000483506 RMI2Q96E14 147 aa11.97□□□□□ -0.49
HDAC6-225ENST00000483506 RPL39LQ96EH5 51 aaKnown RBP11.97□□□□□ -0.49
HDAC6-225ENST00000483506 RYR1P21817 5038 aa11.96□□□□□ -0.49
HDAC6-225ENST00000483506 RAB4AP20338 218 aa11.96□□□□□ -0.49
HDAC6-225ENST00000483506 Q0VG73 95 aa11.96□□□□□ -0.49
HDAC6-225ENST00000483506 PNRC1Q12796 327 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-225ENST00000483506 MRAP2Q96G30 205 aa11.96□□□□□ -0.49
HDAC6-225ENST00000483506 A0A1B0GW15 77 aa11.95□□□□□ -0.5
HDAC6-225ENST00000483506 RBX1P62877 108 aa11.95□□□□□ -0.5
HDAC6-225ENST00000483506 GAGE6Q13070 117 aa11.95□□□□□ -0.5
HDAC6-225ENST00000483506 COTL1Q14019 142 aa11.95□□□□□ -0.5
HDAC6-225ENST00000483506 UBE2WQ96B02 151 aa11.95□□□□□ -0.5
HDAC6-225ENST00000483506 TMEM243Q9BU79 118 aa11.95□□□□□ -0.5
HDAC6-225ENST00000483506 PRR34Q9NV39 138 aa11.95□□□□□ -0.5
HDAC6-225ENST00000483506 APOBP04114 4563 aaKnown RBP11.94□□□□□ -0.5
HDAC6-225ENST00000483506 A0A1B0GUV1 79 aa11.94□□□□□ -0.5
HDAC6-225ENST00000483506 SDHAF1A6NFY7 115 aa11.94□□□□□ -0.5
HDAC6-225ENST00000483506 CDK2AP2O75956 126 aa11.94□□□□□ -0.5
HDAC6-225ENST00000483506 NCR2O95944 276 aa11.94□□□□□ -0.5
HDAC6-225ENST00000483506 UQCC3Q6UW78 93 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms