RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 WDR73Q6P4I2 378 aa12.73□□□□□ -0.37
PTCD3-210ENST00000473829 NFE4Q86UQ8 179 aa12.73□□□□□ -0.37
PTCD3-210ENST00000473829 DNAH5Q8TE73 4624 aa12.73□□□□□ -0.37
PTCD3-210ENST00000473829 M0QY20 66 aa12.72□□□□□ -0.37
PTCD3-210ENST00000473829 TWIST1Q15672 202 aa12.72□□□□□ -0.37
PTCD3-210ENST00000473829 CT83Q5H943 113 aa12.72□□□□□ -0.37
PTCD3-210ENST00000473829 DPH3P1Q9H4G8 78 aa12.72□□□□□ -0.37
PTCD3-210ENST00000473829 KRTAP10-2P60368 255 aa12.71□□□□□ -0.37
PTCD3-210ENST00000473829 SPATA12Q7Z6I5 190 aa12.71□□□□□ -0.37
PTCD3-210ENST00000473829 DAZ4Q86SG3 579 aaKnown RBP12.71□□□□□ -0.37
PTCD3-210ENST00000473829 DAZ3Q9NR90 486 aaKnown RBP12.71□□□□□ -0.37
PTCD3-210ENST00000473829 LRP1BQ9NZR2 4599 aa12.71□□□□□ -0.38
PTCD3-210ENST00000473829 A8MWL6 223 aa12.7□□□□□ -0.38
PTCD3-210ENST00000473829 RPL23P62829 140 aaKnown RBP12.7□□□□□ -0.38
PTCD3-210ENST00000473829 PEA15Q15121 130 aa12.7□□□□□ -0.38
PTCD3-210ENST00000473829 NIT1Q86X76 327 aa12.7□□□□□ -0.38
PTCD3-210ENST00000473829 ISOC2Q96AB3 205 aa12.7□□□□□ -0.38
PTCD3-210ENST00000473829 PGLYRP4Q96LB8 373 aa12.7□□□□□ -0.38
PTCD3-210ENST00000473829 Q9HAA7 133 aa12.7□□□□□ -0.38
PTCD3-210ENST00000473829 OSTCQ9NRP0 149 aa12.7□□□□□ -0.38
PTCD3-210ENST00000473829 FOXA3P55318 350 aaPredicted RBP12.69□□□□□ -0.38
PTCD3-210ENST00000473829 TMEM241Q24JQ0 296 aa12.69□□□□□ -0.38
PTCD3-210ENST00000473829 FAM74A3Q4VXF1 159 aa12.69□□□□□ -0.38
PTCD3-210ENST00000473829 TRBV6-8A0A0A6YYG3 113 aa12.68□□□□□ -0.38
PTCD3-210ENST00000473829 NTM-AS1Q6ZSK4 140 aa12.68□□□□□ -0.38
PTCD3-210ENST00000473829 V9GYV3 84 aa12.68□□□□□ -0.38
PTCD3-210ENST00000473829 RYR1P21817 5038 aa12.67□□□□□ -0.38
PTCD3-210ENST00000473829 C16orf90A8MZG2 172 aa12.67□□□□□ -0.38
PTCD3-210ENST00000473829 LAGE3Q14657 143 aa12.67□□□□□ -0.38
PTCD3-210ENST00000473829 ADIRFQ15847 76 aa12.67□□□□□ -0.38
PTCD3-210ENST00000473829 RASL11AQ6T310 242 aa12.67□□□□□ -0.38
PTCD3-210ENST00000473829 TSKUQ8WUA8 353 aa12.67□□□□□ -0.38
PTCD3-210ENST00000473829 SMDT1Q9H4I9 107 aa12.67□□□□□ -0.38
PTCD3-210ENST00000473829 NAT8Q9UHE5 227 aa12.67□□□□□ -0.38
PTCD3-210ENST00000473829 A0A087WTM6 91 aa12.66□□□□□ -0.38
PTCD3-210ENST00000473829 TRAV26-2A0A0B4J265 109 aa12.66□□□□□ -0.38
PTCD3-210ENST00000473829 HIGD1CA8MV81 97 aa12.66□□□□□ -0.38
PTCD3-210ENST00000473829 H7C1H1 209 aa12.66□□□□□ -0.38
PTCD3-210ENST00000473829 FUSP35637 526 aaKnown RBP eCLIP12.66□□□□□ -0.38
PTCD3-210ENST00000473829 DNAJC30Q96LL9 226 aa12.66□□□□□ -0.38
PTCD3-210ENST00000473829 C15orf54Q8N8G6 183 aa12.65□□□□□ -0.38
PTCD3-210ENST00000473829 GFRA4Q9GZZ7 299 aa12.65□□□□□ -0.38
PTCD3-210ENST00000473829 GATD1Q8NB37 220 aa12.64□□□□□ -0.39
PTCD3-210ENST00000473829 URGCP-MRPS24S4R325 110 aa12.64□□□□□ -0.39
PTCD3-210ENST00000473829 LRCOL1A6NCL2 159 aa12.63□□□□□ -0.39
PTCD3-210ENST00000473829 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.63□□□□□ -0.39
PTCD3-210ENST00000473829 NIT2Q9NQR4 276 aa12.63□□□□□ -0.39
PTCD3-210ENST00000473829 KLK12Q9UKR0 248 aa12.63□□□□□ -0.39
PTCD3-210ENST00000473829 A0A087WX48 190 aa12.62□□□□□ -0.39
PTCD3-210ENST00000473829 FAM231BA6NCW3 169 aa12.62□□□□□ -0.39
PTCD3-210ENST00000473829 PSCAO43653 123 aa12.62□□□□□ -0.39
PTCD3-210ENST00000473829 IFITM2Q01629 132 aa12.62□□□□□ -0.39
PTCD3-210ENST00000473829 MPV17L2Q567V2 206 aa12.62□□□□□ -0.39
PTCD3-210ENST00000473829 DEFB104AQ8WTQ1 72 aa12.62□□□□□ -0.39
PTCD3-210ENST00000473829 CHCHD5Q9BSY4 110 aa12.62□□□□□ -0.39
PTCD3-210ENST00000473829 CHCHD7Q9BUK0 85 aa12.62□□□□□ -0.39
PTCD3-210ENST00000473829 APOBP04114 4563 aaKnown RBP12.61□□□□□ -0.39
PTCD3-210ENST00000473829 A0A1B0GUT8 65 aa12.61□□□□□ -0.39
PTCD3-210ENST00000473829 RAB14P61106 215 aa12.61□□□□□ -0.39
PTCD3-210ENST00000473829 TMEM97Q5BJF2 176 aa12.61□□□□□ -0.39
PTCD3-210ENST00000473829 SMIM15Q7Z3B0 74 aa12.61□□□□□ -0.39
PTCD3-210ENST00000473829 NUP35Q8NFH5 326 aa12.61□□□□□ -0.39
PTCD3-210ENST00000473829 BORCS7Q96B45 105 aa12.61□□□□□ -0.39
PTCD3-210ENST00000473829 RPL39LQ96EH5 51 aaKnown RBP12.61□□□□□ -0.39
PTCD3-210ENST00000473829 TRAV8-3A0A0A6YYJ7 113 aa12.6□□□□□ -0.39
PTCD3-210ENST00000473829 TMEM262E9PQX1 116 aa12.6□□□□□ -0.39
PTCD3-210ENST00000473829 IQCJQ1A5X6 159 aa12.6□□□□□ -0.39
PTCD3-210ENST00000473829 HSPG2P98160 4391 aa12.59□□□□□ -0.39
PTCD3-210ENST00000473829 TRBV25-1A0A075B6N4 114 aa12.59□□□□□ -0.39
PTCD3-210ENST00000473829 EREGO14944 169 aa12.59□□□□□ -0.39
PTCD3-210ENST00000473829 GAS8-AS1O95177 125 aa12.59□□□□□ -0.39
PTCD3-210ENST00000473829 WFDC2Q14508 124 aa12.59□□□□□ -0.39
PTCD3-210ENST00000473829 CLLU1Q5K131 121 aa12.59□□□□□ -0.39
PTCD3-210ENST00000473829 Q8N976 141 aa12.59□□□□□ -0.39
PTCD3-210ENST00000473829 IGHV1-24A0A0C4DH33 117 aa12.58□□□□□ -0.4
PTCD3-210ENST00000473829 GAGE6Q13070 117 aa12.58□□□□□ -0.4
PTCD3-210ENST00000473829 ATRAIDQ6UW56 229 aa12.58□□□□□ -0.4
PTCD3-210ENST00000473829 MAPKAPK5-AS1Q8N8E1 139 aa12.58□□□□□ -0.4
PTCD3-210ENST00000473829 UBE2WQ96B02 151 aa12.58□□□□□ -0.4
PTCD3-210ENST00000473829 SMIM27A0A1W2PRY6 76 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 KCNIP4Q6PIL6 250 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 FRZBQ92765 325 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 RNF185Q96GF1 192 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 TM2D2Q9BX73 214 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 KRTAP3-3Q9BYR6 98 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 KRTAP3-2Q9BYR7 98 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 TMEM191AQ9H0A3 160 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 NAT8BQ9UHF3 227 aa12.57□□□□□ -0.4
PTCD3-210ENST00000473829 RBX1P62877 108 aa12.56□□□□□ -0.4
PTCD3-210ENST00000473829 ELOBQ15370 118 aa12.56□□□□□ -0.4
PTCD3-210ENST00000473829 ENHOQ6UWT2 76 aa12.56□□□□□ -0.4
PTCD3-210ENST00000473829 PGPEP1Q9NXJ5 209 aa12.56□□□□□ -0.4
PTCD3-210ENST00000473829 ANGP03950 147 aaKnown RBP12.55□□□□□ -0.4
PTCD3-210ENST00000473829 RIGQ13278 110 aa12.55□□□□□ -0.4
PTCD3-210ENST00000473829 AMN1Q8IY45 258 aa12.55□□□□□ -0.4
PTCD3-210ENST00000473829 IGKV2D-24A0A075B6R9 120 aa12.54□□□□□ -0.4
PTCD3-210ENST00000473829 LECT2O14960 151 aa12.54□□□□□ -0.4
PTCD3-210ENST00000473829 RAB4AP20338 218 aa12.54□□□□□ -0.4
PTCD3-210ENST00000473829 PKIAP61925 76 aa12.54□□□□□ -0.4
PTCD3-210ENST00000473829 CDPF1Q6NVV7 123 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms