RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RAPGEF6Q8TEU7 1601 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 A0A1B0GUT8 65 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 SAA1P0DJI8 122 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-221ENST00000641996 LINC01554Q52M75 96 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 IGHV3OR16-13A0A075B7E8 117 aa2.71□□□□□ -1.97
SCN1A-221ENST00000641996 SHANK3Q9BYB0 1731 aa2.71□□□□□ -1.97
SCN1A-221ENST00000641996 RREB1Q92766 1687 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 Q8N8P6 123 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 TP53TG3Q9ULZ0 132 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 QRFPP83859 136 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 SUMO4Q6EEV6 95 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 C14orf132Q9NPU4 83 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 BCL9LQ86UU0 1499 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 A0A0J9YXV3 536 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 IGHV4-31P0DP07 118 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 ZNF491Q8N8L2 437 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 LY75O60449 1722 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 A0A0J9YXY3 114 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 ITGBL1O95965 494 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-221ENST00000641996 TRBV6-7A0A0A0MS04 114 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 DPTQ07507 201 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 ITLN1Q8WWA0 313 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 ITLN2Q8WWU7 325 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-221ENST00000641996 FRMD6-AS1P0C7T7 363 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 KIAA0087Q14695 138 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 IGFL3Q6UXB1 125 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 BPTFQ12830 3046 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 QSER1Q2KHR3 1735 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 MYOM1P52179 1685 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 TMEM223A0PJW6 202 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 WISP2O76076 250 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 LY6HO94772 140 aa2.71□□□□□ -1.98
SCN1A-221ENST00000641996 TRAV7A0A075B6U4 112 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV2D-26A0A0A0MRZ7 120 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 PAPPA2Q9BXP8 1791 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 M0R135 149 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 CISD3P0C7P0 127 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 NNATQ16517 81 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 SPRR3Q9UBC9 169 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 RNF223E7ERA6 249 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 CDK2AP2O75956 126 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 DPM3Q9P2X0 92 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 DUOX1Q9NRD9 1551 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 RITA1Q96K30 269 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 RIMBP3CA6NJZ7 1639 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 RIMBP3BA6NNM3 1639 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 RIMBP3Q9UFD9 1639 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 RPL37AP8A6NKH3 93 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 IGHV7-4-1A0A0J9YVY3 117 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 C9JCJ5 164 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 HMGN2P05204 90 aaKnown RBP2.7□□□□□ -1.98
SCN1A-221ENST00000641996 FHL2Q14192 279 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 C1orf158Q8N1D5 194 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 SPATA3Q8NHX4 192 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 TRBV10-3A0A0K0K1G6 114 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 EBI3Q14213 229 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV1-27A0A075B6S5 117 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 ATP5EP2Q5VTU8 51 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 ZNF826PQ6ZT77 177 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 NEXN-AS1Q8NBZ9 246 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 ADGRB2O60241 1585 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 HIGD2BQ4VC39 106 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 C1orf100Q5SVJ3 147 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 NDUFA11Q86Y39 141 aa2.7□□□□□ -1.98
SCN1A-221ENST00000641996 SPAG11BQ08648 103 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 SPAG11AQ6PDA7 123 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 A0A0A6YYD4 124 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 ZNF295-AS1Q8N0V1 137 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 PRO0461Q9UI25 63 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 TULP4Q9NRJ4 1543 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 CSRP3P50461 194 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 LUZP6Q538Z0 58 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 LY6LH3BQJ8 138 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 A0A0D9SEW6 157 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 C2orf70A6NJV1 201 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 AVPP01185 164 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 GP1BBP13224 206 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 IGKV6-21A0A0C4DH24 114 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 A6NDX4 124 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 Q6JHZ5 121 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 Q8N9W7 124 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 CGAP01215 116 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 LINC00310P59036 64 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 PLA2G12BQ9BX93 195 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 ATP6V0E1O15342 81 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 COL8A2P25067 703 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 FAM60AQ9NP50 221 aa2.69□□□□□ -1.98
SCN1A-221ENST00000641996 CD59P13987 128 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 SPINT4Q6UDR6 99 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 TREML4Q6UXN2 200 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-221ENST00000641996 TM2D3Q9BRN9 247 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 NTN3O00634 580 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-221ENST00000641996 COL5A3P25940 1745 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-221ENST00000641996 RPL28P46779 137 aaKnown RBP2.68□□□□□ -1.98
SCN1A-221ENST00000641996 C11orf72Q8NBR9 251 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 PKD1L3Q7Z443 1732 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 SIGLEC1Q9BZZ2 1709 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 CSRP2Q16527 193 aa2.68□□□□□ -1.98
SCN1A-221ENST00000641996 GDF5OSQ5U4N7 250 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms