RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CAMPP49913 170 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 SPANXN1Q5VSR9 72 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 TMEM88Q6PEY1 159 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 LYZL1Q6UWQ5 148 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 ZNF493Q6ZR52 646 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 NUP35Q8NFH5 326 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 GTSF1Q8WW33 167 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 IMMP2LQ96T52 175 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 B9D2Q9BPU9 175 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 OVOL2Q9BRP0 275 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 GFRA4Q9GZZ7 299 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 GSN-AS1Q9NRJ2 163 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 SMCO4Q9NRQ5 59 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 TMEM242Q9NWH2 141 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 URGCP-MRPS24S4R325 110 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 TRGV1A0A0A0MS02 117 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 IGHV4-28A0A0C4DH34 117 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 CXorf65A6NEN9 183 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 M0R2P5 195 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 DEFB4AO15263 64 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 SCO1O75880 301 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 OR5AL1P0C617 328 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 IGLC6P0CF74 106 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 RNASE3P12724 160 aaKnown RBP3.81□□□□□ -1.8
LIG3-210ENST00000588109 CTRLP40313 264 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 CACNG7P62955 275 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 RIGQ13278 110 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 TWIST1Q15672 202 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 ZNF876PQ49A33 203 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 DNLZQ5SXM8 178 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 CBLN2Q8IUK8 224 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 ZFP82Q8N141 532 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 C11orf72Q8NBR9 251 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 OR10AG1Q8NH19 301 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 RNASE8Q8TDE3 154 aaKnown RBP3.81□□□□□ -1.8
LIG3-210ENST00000588109 BTF3L4Q96K17 158 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 C9orf85Q96MD7 179 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 TM2D3Q9BRN9 247 aa3.81□□□□□ -1.8
LIG3-210ENST00000588109 NOP10Q9NPE3 64 aaKnown RBP3.81□□□□□ -1.8
LIG3-210ENST00000588109 MRPL16Q9NX20 251 aaKnown RBP3.81□□□□□ -1.8
LIG3-210ENST00000588109 TRAV9-1A0A075B6T8 112 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 A0A1B0GUT8 65 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 SNAI2O43623 268 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 S100A8P05109 93 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 SMIM17P0DL12 118 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 NTF3P20783 257 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 FOXA3P55318 350 aaPredicted RBP3.8□□□□□ -1.8
LIG3-210ENST00000588109 RAB4BP61018 213 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 MRPL54Q6P161 138 aaKnown RBP3.8□□□□□ -1.8
LIG3-210ENST00000588109 SMIM15Q7Z3B0 74 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 LINC00469Q8N7U9 141 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 Q8NAQ8 132 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 SCRT2Q9NQ03 307 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 NBEAL1Q6ZS30 2694 aa3.8□□□□□ -1.8
LIG3-210ENST00000588109 TRGV2A0A075B6R0 118 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 TGIF2-C20orf24A0A0A6YYL0 155 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 A0A0J9YWU9 116 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 TEX48A0A1B0GUV7 120 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 A0A1B0GW15 77 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 PLAC8L1A1L4L8 177 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 LYRM9A8MSI8 78 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 F8WDY8 70 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 GAGE7O76087 117 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 TRGC1P0CF51 173 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 NHLRC4P0CG21 123 aaPredicted RBP3.79□□□□□ -1.8
LIG3-210ENST00000588109 GAGE12FP0CL80 117 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 GAGE12GP0CL81 117 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 GAGE12IP0CL82 117 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 SPART-AS1P0CW21 52 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 DEFB130BP0DP73 79 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 DEFB130AP0DP74 79 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 PCP4P48539 62 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 HBBP68871 147 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 DAZ2Q13117 558 aaKnown RBP3.79□□□□□ -1.8
LIG3-210ENST00000588109 ELOBQ15370 118 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 LGALS9BQ3B8N2 356 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 FAM222AQ5U5X8 452 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 Q6ZTI0 123 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 ATP5L2Q7Z4Y8 100 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 FAM210BQ96KR6 192 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 AP1S3Q96PC3 154 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 CNFNQ9BYD5 112 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 MSRB1Q9NZV6 116 aa3.79□□□□□ -1.8
LIG3-210ENST00000588109 IGHV4-4A0A075B6R2 117 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 A8MWV9 139 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 NXPH4O95158 308 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 IGHV3-53P01767 116 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 MGPP08493 103 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 DAD1P61803 113 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 COX19Q49B96 90 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 FAM74A4Q5TZK3 123 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 C14orf178Q8N769 122 aaPredicted RBP3.78□□□□□ -1.8
LIG3-210ENST00000588109 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.78□□□□□ -1.8
LIG3-210ENST00000588109 OR4C5Q8NGB2 326 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 RASL10AQ92737 203 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 FRZBQ92765 325 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 PTH2Q96A98 100 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 NDUFAF3Q9BU61 184 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 KRTAP17-1Q9BYP8 105 aa3.78□□□□□ -1.8
LIG3-210ENST00000588109 C11orf68Q9H3H3 251 aaKnown RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms