RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 C15orf53Q8NAA6 179 aa6.13□□□□□ -1.43
PDLIM5-221ENST00000542407 ASH1LQ9NR48 2969 aaKnown RBP6.13□□□□□ -1.43
PDLIM5-221ENST00000542407 TRAV40A0A0B4J280 105 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 SRSF9Q13242 221 aaKnown RBP eCLIP6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 MRPL51Q4U2R6 128 aaKnown RBP6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 HIST2H2BCQ6DN03 193 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 HIST2H2BDQ6DRA6 164 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 ZNF493Q6ZR52 646 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 ANKRD29Q8N6D5 301 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 C10orf105Q8TEF2 133 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 HHLA3Q9XRX5 114 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 USP9XQ93008 2570 aaPredicted RBP6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 LINC01548A6NM66 108 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 CRYGAP11844 174 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 UBE2E1P51965 193 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 SUB1P53999 127 aaKnown RBP eCLIP6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 PMAIP1Q13794 54 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 LINC01561Q8N1V8 128 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 ZFHX3Q15911 3703 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 IGHV4-61A0A0C4DH41 118 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 H7C1H1 209 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 TRACP01848 142 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 TWIST1Q15672 202 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 FAM104BQ5XKR9 115 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 DSCR8Q96T75 97 aa6.12□□□□□ -1.43
PDLIM5-221ENST00000542407 PLXNB1O43157 2135 aa6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 TRAV8-2A0A0B4J237 113 aa6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 HOXA3O43365 443 aaPredicted RBP6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 IL4P05112 153 aa6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 LYZP61626 148 aa6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 PRIMA1Q86XR5 153 aa6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 ABCA2Q9BZC7 2435 aa6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 CSMD1Q96PZ7 3565 aa6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 PAX8Q06710 450 aa6.11□□□□□ -1.43
PDLIM5-221ENST00000542407 TRAV13-1A0A0B4J241 112 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 I3L2K1 104 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 ZFP2Q6ZN57 461 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 Q8N1Y9 231 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 FBN2P35556 2912 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 IGHV4-30-2A0A087WSY4 118 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 IGLV2-11P01706 119 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 GP9P14770 177 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 SAA4P35542 130 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 NDPQ00604 133 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 C8orf49Q96NF6 230 aa6.1□□□□□ -1.43
PDLIM5-221ENST00000542407 LINC01549A6NIU2 74 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 GAS8-AS1O95177 125 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 AVPP01185 164 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 PLGLAQ15195 96 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 C17orf77Q96MU5 243 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 ODF3Q96PU9 254 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 SPANXDQ9BXN6 97 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 OTORQ9NRC9 128 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 MRPL35Q9NZE8 188 aaKnown RBP6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 UTP20O75691 2785 aaKnown RBP6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 CSMD2Q7Z408 3487 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 NCBP2LA6PVI3 153 aaKnown RBP6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 NDUFC2O95298 119 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 EGR2P11161 476 aaPredicted RBP6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 CRIP1P50238 77 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 WFDC11Q8NEX6 87 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 TRGV9Q99603 122 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 X6R8D5 127 aa6.09□□□□□ -1.43
PDLIM5-221ENST00000542407 K7EIM0 57 aa6.09□□□□□ -1.44
PDLIM5-221ENST00000542407 MORN3Q6PF18 240 aaPredicted RBP6.09□□□□□ -1.44
PDLIM5-221ENST00000542407 Q8N9W7 124 aa6.09□□□□□ -1.44
PDLIM5-221ENST00000542407 TMEM158Q8WZ71 300 aa6.09□□□□□ -1.44
PDLIM5-221ENST00000542407 CACNA1BQ00975 2339 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 M0R3E3 92 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 COX7CP15954 63 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 GATA1P15976 413 aaPredicted RBP6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 KRTAP3-3Q9BYR6 98 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 KRTAP3-2Q9BYR7 98 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 ZNF462Q96JM2 2506 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 A0A096LNT2 108 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 TRAV2A0A0B4J234 112 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 A8MWV9 139 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 H3BS24 57 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 MSRB1Q9NZV6 116 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 U3KQK5 164 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 ZFYVE26Q68DK2 2539 aa6.08□□□□□ -1.44
PDLIM5-221ENST00000542407 IGHV7-81A0A0B4J1V7 117 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 TRBV7-7A0A0K0K1E9 115 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 SCGB1C2P0DMR2 95 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 BRK1Q8WUW1 75 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 IGLV11-55A0A075B6I3 123 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 HLA-DRB4P13762 266 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 POM121L12Q8N7R1 296 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 AGPAT4-IT1Q9H0P7 198 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 HLA-DRB4X5D2U9 266 aa6.07□□□□□ -1.44
PDLIM5-221ENST00000542407 TRGV11A0A075B6L2 103 aa6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 hADV29S1A0JD25 119 aa6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 F8W735 103 aaPredicted RBP6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 IGKV1-17P01599 117 aa6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 KLK9Q2XQG4 91 aa6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 PSMG4Q5JS54 123 aa6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 SCGB1D4Q6XE38 83 aa6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 SBSPONQ8IVN8 264 aa6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 C11orf45Q8TAV5 145 aa6.06□□□□□ -1.44
PDLIM5-221ENST00000542407 PIFOQ8TCI5 191 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms