RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 GATA1P15976 413 aaPredicted RBP2.92□□□□□ -1.94
USP4-209ENST00000475873 TBPP20226 339 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 GALR1P47211 349 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 SULT1A1P50225 295 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 SULT1A2P50226 295 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 SUB1P53999 127 aaKnown RBP eCLIP2.92□□□□□ -1.94
USP4-209ENST00000475873 RPS25P62851 125 aaKnown RBP2.92□□□□□ -1.94
USP4-209ENST00000475873 KRTAP19-2Q3LHN2 52 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 C2orf83Q53S99 150 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 TMEM128Q5BJH2 165 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 COL5A1-AS1Q5SY13 56 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 LAIR2Q6ISS4 152 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 DPPA3Q6W0C5 159 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 BEST4Q8NFU0 473 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 BTF3L4Q96K17 158 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 SIGMAR1Q99720 223 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 KRTAP9-9Q9BYP9 154 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 KRTAP9-4Q9BYQ2 154 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 PRO1933Q9H354 126 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 CST9LQ9H4G1 147 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 SLC25A22Q9H936 323 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 SPANXA1Q9NS26 97 aa2.92□□□□□ -1.94
USP4-209ENST00000475873 TMEM218A2RU14 115 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 H3BMQ9 156 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 OR7C2O60412 319 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 MBPP02686 304 aaPredicted RBP2.91□□□□□ -1.94
USP4-209ENST00000475873 PIGPP57054 158 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 MT1HP80294 61 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 GAGE5Q13069 117 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 GAGE6Q13070 117 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 MEF2DQ14814 521 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 ANXA2RQ3ZCQ2 193 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 PHLDA2Q53GA4 152 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 CD164L2Q6UWJ8 174 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 FA2HQ7L5A8 372 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 NIT1Q86X76 327 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 HOGA1Q86XE5 327 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 ZNF555Q8NEP9 628 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 OR10P1Q8NGE3 313 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 OR10G4Q8NGN3 311 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 ATG5Q9H1Y0 275 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 V9GY05 133 aa2.91□□□□□ -1.94
USP4-209ENST00000475873 TRAV8-1A0A0A6YYK1 113 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 TRAV26-2A0A0B4J265 109 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 IGHV3-16A0A0C4DH30 117 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 LOC100130705A0A1B0GUX0 176 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 TINCRA0A1B0GVN0 87 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 FAM231BA6NCW3 169 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 PITX3O75364 302 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 UPK1BO75841 260 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 SLPIP03973 132 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 HOXB5P09067 269 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 KRTAP10-6P60371 365 aaPredicted RBP2.9□□□□□ -1.95
USP4-209ENST00000475873 MXD1Q05195 221 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 UBE2V1Q13404 147 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 RHEBQ15382 184 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 TMEM97Q5BJF2 176 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 Q5BKY6 102 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 PYY3Q5JQD4 70 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 PRR9Q5T870 116 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 TMEM268Q5VZI3 342 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 FAAP20Q6NZ36 180 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 LINC01551Q86U37 167 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 OR10G9Q8NGN4 311 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 C7orf33Q8WU49 177 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 GTSF1Q8WW33 167 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 HIST1H2BAQ96A08 127 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 MRPL53Q96EL3 112 aaKnown RBP2.9□□□□□ -1.95
USP4-209ENST00000475873 RNF185Q96GF1 192 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 ZC2HC1AQ96GY0 325 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 SMIM8Q96KF7 97 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 ATP5SQ99766 215 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 COMMD3Q9UBI1 195 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 PSORS1C2Q9UIG4 136 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 HSPB8Q9UJY1 196 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 SLC45A2Q9UMX9 530 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 LSM2Q9Y333 95 aaKnown RBP2.9□□□□□ -1.95
USP4-209ENST00000475873 COX11Q9Y6N1 276 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 U3KQ87 197 aa2.9□□□□□ -1.95
USP4-209ENST00000475873 A0A087WXM4 84 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 ZFP92A6NM28 416 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 IFITM5A6NNB3 132 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 KLLNB2CW77 178 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 MRPS12O15235 138 aaKnown RBP2.89□□□□□ -1.95
USP4-209ENST00000475873 APOC3P02656 99 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 RFX2P48378 723 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 AQP4P55087 323 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 TAS2R20P59543 309 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 HERV-K104P61576 105 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 CNBPP62633 177 aaKnown RBP2.89□□□□□ -1.95
USP4-209ENST00000475873 KLF9Q13886 244 aaPredicted RBP2.89□□□□□ -1.95
USP4-209ENST00000475873 TAL2Q16559 108 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 NMSQ5H8A3 153 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 DHRS11Q6UWP2 260 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 SVBPQ8N300 66 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 RAB2BQ8WUD1 216 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 ASB13Q8WXK3 278 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 HYLS1Q96M11 299 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 LINC00477Q96M19 166 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 TP53RKQ96S44 253 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms