RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 COL5A3P25940 1745 aaPredicted RBP1.7□□□□□ -2.14
HERC4-208ENST00000463478 RPS25P62851 125 aaKnown RBP1.7□□□□□ -2.14
HERC4-208ENST00000463478 TEX261Q6UWH6 196 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 UNQ6190/PRO20217Q6UXQ8 127 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 IZUMO2Q6UXV1 221 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 CASC2Q6XLA1 102 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 FOXI2Q6ZQN5 318 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 HEATR5AQ86XA9 2040 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 Q8N2B8 174 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 GGACTQ9BVM4 153 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 PTPRBP23467 1997 aa1.7□□□□□ -2.14
HERC4-208ENST00000463478 COL11A1P12107 1806 aaPredicted RBP1.7□□□□□ -2.14
HERC4-208ENST00000463478 EP300Q09472 2414 aaPredicted RBP1.69□□□□□ -2.14
HERC4-208ENST00000463478 TRBV20-1A0A075B6N2 111 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 IGLV3-32A0A0A0MS00 114 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 TRAV2A0A0B4J234 112 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 FAM92AA1XBS5 289 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 F8W1H4 67 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 COPZ1P61923 177 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 PLGLB1Q02325 96 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 SCIMPQ6UWF3 145 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 LINC00299Q6ZSB3 139 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 SMIM7Q9BQ49 75 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 REG4Q9BYZ8 158 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 TMEM191AQ9H0A3 160 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 DNAJC15Q9Y5T4 150 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 CRYBG3Q68DQ2 2970 aa1.69□□□□□ -2.14
HERC4-208ENST00000463478 NIPBLQ6KC79 2804 aaeCLIP1.69□□□□□ -2.14
HERC4-208ENST00000463478 COL1A1P02452 1464 aaPredicted RBP1.69□□□□□ -2.14
HERC4-208ENST00000463478 IGF2RP11717 2491 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 VPS13AQ96RL7 3174 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 NCKAP5O14513 1909 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 LOC110117498A0A087WWA1 95 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 TRBV6-4A0A1B0GX49 114 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 H3BRM9 83 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 K7ERU9 68 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 CDC42EP2O14613 210 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 NPFFO15130 113 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 PCBD1P61457 104 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 MIR22HGQ0VDD5 57 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 MPV17LQ2QL34 196 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 GKN2Q86XP6 184 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 ZNF563Q8TA94 476 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 Q8TAT8 98 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 ARL11Q969Q4 196 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 FKBP11Q9NYL4 201 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 CCDC167Q9P0B6 97 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 COMMD3Q9UBI1 195 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 GBF1Q92538 1859 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 NESP48681 1621 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 ADGRB2O60241 1585 aa1.68□□□□□ -2.14
HERC4-208ENST00000463478 MXRA5Q9NR99 2828 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 STRCP1A6NGW2 1772 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 RTTNQ86VV8 2226 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 ARHGAP31Q2M1Z3 1444 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 IGHV1-24A0A0C4DH33 117 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 C3orf85A0A1B0GTC6 90 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 C5orf67F2Z3F1 127 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 M0R2P5 195 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 LINC00694P0DN24 101 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 SNRPD3P62318 126 aaKnown RBP1.67□□□□□ -2.14
HERC4-208ENST00000463478 EMX2Q04743 252 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 KRTAP21-3Q3LHN1 58 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 ATP11AUNQ6ZP68 121 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 DEFB119Q8N690 84 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 ATP6V0E2Q8NHE4 81 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 OTOSQ8NHW6 89 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 LINC00526Q96FQ7 95 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 XIRP2A4UGR9 3374 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 TMEM2Q9UHN6 1383 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 WDR87Q6ZQQ6 2873 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 COL4A5P29400 1685 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 NUP210LQ5VU65 1888 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 SCN8AQ9UQD0 1980 aa1.67□□□□□ -2.14
HERC4-208ENST00000463478 SMG1Q96Q15 3661 aaKnown RBP1.67□□□□□ -2.14
HERC4-208ENST00000463478 XIRP1Q702N8 1843 aaKnown RBP1.66□□□□□ -2.14
HERC4-208ENST00000463478 IGKV3D-7A0A0C4DH55 119 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 IGKV3OR2-268A0A0C4DH90 116 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 C9orf170A2RU37 121 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 BBIP1A8MTZ0 92 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 GEMIN2O14893 280 aaKnown RBP1.66□□□□□ -2.14
HERC4-208ENST00000463478 CD2P06729 351 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 CD14P08571 375 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 GUCA1AP43080 201 aaPredicted RBP1.66□□□□□ -2.14
HERC4-208ENST00000463478 LINC01545Q5VT33 79 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 FAM19A2Q8N3H0 131 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 TCTEX1D1Q8N7M0 179 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 MRPL57Q9BQC6 102 aaKnown RBP1.66□□□□□ -2.14
HERC4-208ENST00000463478 LINC00470Q9BZP3 86 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 TNFSF18Q9UNG2 199 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 BSNQ9UPA5 3926 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 FAM186AA6NE01 2351 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 ABCA13Q86UQ4 5058 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 NF1P21359 2839 aa1.66□□□□□ -2.14
HERC4-208ENST00000463478 BRWD1Q9NSI6 2320 aa1.65□□□□□ -2.15
HERC4-208ENST00000463478 A0A0J9YY99 117 aa1.65□□□□□ -2.15
HERC4-208ENST00000463478 CD3DP04234 171 aa1.65□□□□□ -2.15
HERC4-208ENST00000463478 LPAR5Q9H1C0 372 aa1.65□□□□□ -2.15
HERC4-208ENST00000463478 TAS2R8Q9NYW2 309 aa1.65□□□□□ -2.15
HERC4-208ENST00000463478 PRRC2CQ9Y520 2896 aaKnown RBP1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms