RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 AEBP2Q6ZN18 517 aaPredicted RBP20.9■□□□□ 0.94
HERC4-208ENST00000463478 CHIC1Q5VXU3 224 aa20.11■□□□□ 0.81
HERC4-208ENST00000463478 SENP3Q9H4L4 574 aaPredicted RBP17.8■□□□□ 0.44
HERC4-208ENST00000463478 PHF23Q9BUL5 403 aaPredicted RBP17.64■□□□□ 0.41
HERC4-208ENST00000463478 FOXD1Q16676 465 aa16.54■□□□□ 0.24
HERC4-208ENST00000463478 POTEDQ86YR6 584 aa16.49■□□□□ 0.23
HERC4-208ENST00000463478 PLPPR3Q6T4P5 718 aa16.22■□□□□ 0.19
HERC4-208ENST00000463478 PPP6R1Q9UPN7 881 aa15.65■□□□□ 0.1
HERC4-208ENST00000463478 ADRA2BP18089 450 aa15.6■□□□□ 0.09
HERC4-208ENST00000463478 PIAS4Q8N2W9 510 aaPredicted RBP15.52■□□□□ 0.08
HERC4-208ENST00000463478 MSH5O43196 834 aa15.4■□□□□ 0.06
HERC4-208ENST00000463478 KCNA4P22459 653 aa14.41□□□□□ -0.1
HERC4-208ENST00000463478 PPP4R3CPQ6ZMV5 832 aa14.34□□□□□ -0.11
HERC4-208ENST00000463478 SCAF1Q9H7N4 1312 aaKnown RBP14.3□□□□□ -0.12
HERC4-208ENST00000463478 MAPK8IP2Q13387 824 aaPredicted RBP14.25□□□□□ -0.13
HERC4-208ENST00000463478 DMRT2Q9Y5R5 561 aa14.16□□□□□ -0.14
HERC4-208ENST00000463478 NCBP3Q53F19 620 aaKnown RBP14.06□□□□□ -0.16
HERC4-208ENST00000463478 CNKSR2Q8WXI2 1034 aa13.9□□□□□ -0.18
HERC4-208ENST00000463478 NPM3O75607 178 aaKnown RBP13.86□□□□□ -0.19
HERC4-208ENST00000463478 EHMT2Q96KQ7 1210 aa13.84□□□□□ -0.19
HERC4-208ENST00000463478 SLC4A1APQ9BWU0 796 aaKnown RBP13.79□□□□□ -0.2
HERC4-208ENST00000463478 HOXD11P31277 338 aaPredicted RBP13.75□□□□□ -0.21
HERC4-208ENST00000463478 RNF216Q9NWF9 866 aaPredicted RBP13.71□□□□□ -0.21
HERC4-208ENST00000463478 CACNB1Q02641 598 aaPredicted RBP13.65□□□□□ -0.22
HERC4-208ENST00000463478 DCAF8L1A6NGE4 600 aa13.51□□□□□ -0.25
HERC4-208ENST00000463478 CSRNP3Q8WYN3 585 aa13.46□□□□□ -0.25
HERC4-208ENST00000463478 DNAJC5BQ9UF47 199 aa13.32□□□□□ -0.28
HERC4-208ENST00000463478 ZBTB22O15209 634 aa13.25□□□□□ -0.29
HERC4-208ENST00000463478 RNF39Q9H2S5 420 aa13.16□□□□□ -0.3
HERC4-208ENST00000463478 FOXD4L1Q9NU39 408 aa13.16□□□□□ -0.3
HERC4-208ENST00000463478 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.06□□□□□ -0.32
HERC4-208ENST00000463478 SLC4A2P04920 1241 aa12.99□□□□□ -0.33
HERC4-208ENST00000463478 C1QBPQ07021 282 aaKnown RBP12.99□□□□□ -0.33
HERC4-208ENST00000463478 U3KPZ7 1027 aaPredicted RBP12.85□□□□□ -0.35
HERC4-208ENST00000463478 MYCNP04198 464 aaPredicted RBP12.8□□□□□ -0.36
HERC4-208ENST00000463478 POTEHQ6S545 545 aa12.72□□□□□ -0.37
HERC4-208ENST00000463478 ATXN8OSP0DMR3 200 aa12.63□□□□□ -0.39
HERC4-208ENST00000463478 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.58□□□□□ -0.4
HERC4-208ENST00000463478 HNRNPUL2Q1KMD3 747 aaKnown RBP12.58□□□□□ -0.4
HERC4-208ENST00000463478 SPINK5Q9NQ38 1064 aaPredicted RBP12.56□□□□□ -0.4
HERC4-208ENST00000463478 APLP2Q06481 763 aa12.53□□□□□ -0.4
HERC4-208ENST00000463478 SAMD1Q6SPF0 538 aaPredicted RBP12.53□□□□□ -0.4
HERC4-208ENST00000463478 CAPN15O75808 1086 aa12.51□□□□□ -0.41
HERC4-208ENST00000463478 ATF5Q9Y2D1 282 aaPredicted RBP12.44□□□□□ -0.42
HERC4-208ENST00000463478 ZNF219Q9P2Y4 722 aaPredicted RBP12.41□□□□□ -0.42
HERC4-208ENST00000463478 DSG3P32926 999 aa12.4□□□□□ -0.42
HERC4-208ENST00000463478 TRHP20396 242 aaPredicted RBP12.37□□□□□ -0.43
HERC4-208ENST00000463478 ABCB7O75027 752 aa12.25□□□□□ -0.45
HERC4-208ENST00000463478 FKBP8Q14318 412 aa12.19□□□□□ -0.46
HERC4-208ENST00000463478 POLA2Q14181 598 aa12.1□□□□□ -0.47
HERC4-208ENST00000463478 ZBTB12Q9Y330 459 aaPredicted RBP11.93□□□□□ -0.5
HERC4-208ENST00000463478 FBLN2P98095 1184 aa11.91□□□□□ -0.5
HERC4-208ENST00000463478 MKRN4PQ13434 485 aaPredicted RBP11.91□□□□□ -0.5
HERC4-208ENST00000463478 RBM42Q9BTD8 480 aaKnown RBP11.85□□□□□ -0.51
HERC4-208ENST00000463478 SPDYE4A6NLX3 237 aa11.83□□□□□ -0.52
HERC4-208ENST00000463478 OSCARQ8IYS5 282 aa11.74□□□□□ -0.53
HERC4-208ENST00000463478 AMER1Q5JTC6 1135 aaPredicted RBP11.69□□□□□ -0.54
HERC4-208ENST00000463478 RTN4Q9NQC3 1192 aaKnown RBP11.68□□□□□ -0.54
HERC4-208ENST00000463478 FBXO3Q9UK99 471 aa11.63□□□□□ -0.55
HERC4-208ENST00000463478 PROM2Q8N271 834 aa11.62□□□□□ -0.55
HERC4-208ENST00000463478 AKT1S1Q96B36 256 aa11.62□□□□□ -0.55
HERC4-208ENST00000463478 SPDYE2BA6NHP3 402 aa11.57□□□□□ -0.56
HERC4-208ENST00000463478 SPDYE6P0CI01 402 aa11.57□□□□□ -0.56
HERC4-208ENST00000463478 SPDYE2Q495Y8 402 aa11.57□□□□□ -0.56
HERC4-208ENST00000463478 ZNF692Q9BU19 519 aaPredicted RBP11.52□□□□□ -0.57
HERC4-208ENST00000463478 REM2Q8IYK8 340 aaPredicted RBP11.49□□□□□ -0.57
HERC4-208ENST00000463478 VASPP50552 380 aaPredicted RBP11.47□□□□□ -0.57
HERC4-208ENST00000463478 SP7Q8TDD2 431 aaPredicted RBP11.47□□□□□ -0.57
HERC4-208ENST00000463478 SSUH2Q9Y2M2 353 aa11.47□□□□□ -0.57
HERC4-208ENST00000463478 CHRDL2Q6WN34 429 aa11.46□□□□□ -0.57
HERC4-208ENST00000463478 PABPN1Q86U42 306 aaKnown RBP eCLIP11.39□□□□□ -0.59
HERC4-208ENST00000463478 PITPNM1O00562 1244 aa11.38□□□□□ -0.59
HERC4-208ENST00000463478 IFNLR1Q8IU57 520 aaPredicted RBP11.33□□□□□ -0.6
HERC4-208ENST00000463478 SPDYE1Q8NFV5 336 aaPredicted RBP11.29□□□□□ -0.6
HERC4-208ENST00000463478 STAG3Q9UJ98 1225 aa11.29□□□□□ -0.6
HERC4-208ENST00000463478 PIP4P2Q8N4L2 257 aa11.25□□□□□ -0.61
HERC4-208ENST00000463478 FXR2P51116 673 aaKnown RBP eCLIP11.23□□□□□ -0.61
HERC4-208ENST00000463478 KLHL34Q8N239 644 aa11.23□□□□□ -0.61
HERC4-208ENST00000463478 CLEC11AQ9Y240 323 aa11.23□□□□□ -0.61
HERC4-208ENST00000463478 PLCD3Q8N3E9 789 aa11.22□□□□□ -0.61
HERC4-208ENST00000463478 MIER1Q8N108 512 aa11.19□□□□□ -0.62
HERC4-208ENST00000463478 SPOCK2Q92563 424 aa11.15□□□□□ -0.62
HERC4-208ENST00000463478 SLC24A1O60721 1099 aa11.12□□□□□ -0.63
HERC4-208ENST00000463478 PLEKHG5O94827 1062 aa11.1□□□□□ -0.63
HERC4-208ENST00000463478 PRR29P0C7W0 189 aa11.09□□□□□ -0.63
HERC4-208ENST00000463478 PRKAR2AP13861 404 aaKnown RBP11.08□□□□□ -0.64
HERC4-208ENST00000463478 PKD2Q13563 968 aa11.08□□□□□ -0.64
HERC4-208ENST00000463478 DCAF8L2P0C7V8 631 aa11.05□□□□□ -0.64
HERC4-208ENST00000463478 ZBTB47Q9UFB7 747 aaPredicted RBP11.04□□□□□ -0.64
HERC4-208ENST00000463478 CHADLQ6NUI6 762 aa11□□□□□ -0.65
HERC4-208ENST00000463478 HAX1O00165 279 aa10.98□□□□□ -0.65
HERC4-208ENST00000463478 ECM2O94769 699 aaPredicted RBP10.98□□□□□ -0.65
HERC4-208ENST00000463478 CIZ1Q9ULV3 898 aaPredicted RBP10.96□□□□□ -0.65
HERC4-208ENST00000463478 CREBZFQ9NS37 354 aa10.9□□□□□ -0.66
HERC4-208ENST00000463478 PLSCR2Q9NRY7 297 aa10.89□□□□□ -0.67
HERC4-208ENST00000463478 FARP1Q9Y4F1 1045 aaPredicted RBP10.88□□□□□ -0.67
HERC4-208ENST00000463478 C19orf67A6NJJ6 358 aa10.86□□□□□ -0.67
HERC4-208ENST00000463478 RGL2O15211 777 aa10.86□□□□□ -0.67
HERC4-208ENST00000463478 NUBP1P53384 320 aa10.83□□□□□ -0.68
HERC4-208ENST00000463478 EVX2Q03828 476 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms