RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 C17orf82Q86X59 251 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-217ENST00000637988 DAZ3Q9NR90 486 aaKnown RBP4.91□□□□□ -1.62
SCN1A-217ENST00000637988 IGKV1D-13A0A0B4J2D9 117 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 IGKV1-13P0DP09 117 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 TREML4Q6UXN2 200 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 NDUFA11Q86Y39 141 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 NCR2O95944 276 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 FGFBP3Q8TAT2 258 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 DEFB104AQ8WTQ1 72 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 C4orf3Q8WVX3 66 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 G3V318 75 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 PLA2G10O15496 165 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 NXPH4O95158 308 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 HSD52Q0P140 79 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 GTSF1Q8WW33 167 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 COX11Q9Y6N1 276 aa4.91□□□□□ -1.62
SCN1A-217ENST00000637988 CTAG1AP78358 180 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 C15orf62A8K5M9 175 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 C9JQL5 133 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 RNASE2P10153 161 aaKnown RBP4.9□□□□□ -1.62
SCN1A-217ENST00000637988 CFHR4Q92496 578 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 ZNF319Q9P2F9 582 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 EXPH5Q8NEV8 1989 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 PIN1P1O15428 100 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 GFRA4Q9GZZ7 299 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 TP53TG1Q9Y2A0 90 aa4.9□□□□□ -1.62
SCN1A-217ENST00000637988 COX7A2LO14548 114 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 SAMD5Q5TGI4 173 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 ZNF493Q6ZR52 646 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 NFE4Q86UQ8 179 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 ANAPC13Q9BS18 74 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 PPP1R3EQ9H7J1 279 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 CFPP27918 469 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 ZNF833PQ6ZTB9 187 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 C17orf77Q96MU5 243 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 HS3ST6Q96QI5 342 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 SPATA25Q9BR10 227 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 ODF1Q14990 250 aa4.9□□□□□ -1.63
SCN1A-217ENST00000637988 RAI1Q7Z5J4 1906 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV3-30P01768 117 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV3-33P01772 117 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV3-30-3P0DP02 117 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV3-30-5P0DP03 117 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 ZFP36P26651 326 aaKnown RBP4.89□□□□□ -1.63
SCN1A-217ENST00000637988 HGFACQ04756 655 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 ZFAND6Q6FIF0 208 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 U3KQE9 123 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 FLVCR1-AS1Q8TAF5 88 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 TMEM242Q9NWH2 141 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 TRBV6-6A0A0A6YYG2 114 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 DEFB136Q30KP8 78 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 HHLA3Q9XRX5 114 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 TEX36Q5VZQ5 186 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 ATP6V0E2Q8NHE4 81 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 H2BFSP57053 126 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV4-30-2A0A087WSY4 118 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 IGHV3-38A0A0C4DH36 116 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 A0A1W2PPI3 338 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 H3BUT2 72 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 SLURP1P55000 103 aa4.89□□□□□ -1.63
SCN1A-217ENST00000637988 LRCOL1A6NCL2 159 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 K7EQD1 137 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 GAGE2BQ13066 116 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 TNRC6BQ9UPQ9 1833 aaKnown RBP4.88□□□□□ -1.63
SCN1A-217ENST00000637988 DDTP30046 118 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 FOXG1P55316 489 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-217ENST00000637988 BVES-AS1Q5T3Y7 98 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 SLX1AQ9BQ83 275 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 NDUFA1O15239 70 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 C1QCP02747 245 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 IGFL4Q6B9Z1 124 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 Q6P435 159 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 NCOR1P1Q9H4R4 102 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 UBE2D4Q9Y2X8 147 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 OR11H6Q8NGC7 330 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 SPANXDQ9BXN6 97 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 DAZAP2Q15038 168 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-217ENST00000637988 NMSQ5H8A3 153 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 LRRC75A-AS1Q8N1F1 130 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 SIGLEC8Q9NYZ4 499 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 TRAV3A0A0B4J244 114 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 IGKV1-16P04430 117 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 SRP19P09132 144 aaKnown RBP4.88□□□□□ -1.63
SCN1A-217ENST00000637988 B3GALT5-AS1P59052 145 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 HAMPP81172 84 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 OCC1Q8TAD7 63 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 FNDC4Q9H6D8 234 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-217ENST00000637988 WDR83OSQ9Y284 106 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 DUX4L9Q6RFH8 374 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-217ENST00000637988 LINC00311Q8N616 119 aa4.88□□□□□ -1.63
SCN1A-217ENST00000637988 DEFB135Q30KP9 77 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 SEM1Q6ZVN7 128 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 SDHAF1A6NFY7 115 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 SERF1AO75920 110 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 TMEM258P61165 79 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 SLC25A29Q8N8R3 303 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 HERV-K104P63124 156 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 NUP35Q8NFH5 326 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 A0A1B0GV90 55 aa4.87□□□□□ -1.63
SCN1A-217ENST00000637988 LTAP01374 205 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 356.9 ms