RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 H3BRN7 92 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 SRSF2Q01130 221 aaKnown RBP6.47□□□□□ -1.37
CD44-208ENST00000428726 ZNF48Q96MX3 618 aaPredicted RBP6.47□□□□□ -1.37
CD44-208ENST00000428726 PRSS22Q9GZN4 317 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 C19orf71A6NCJ1 209 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 C2orf70A6NJV1 201 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 TWIST1Q15672 202 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 DEFB136Q30KP8 78 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 CLEC2AQ6UVW9 174 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 LYPD1Q8N2G4 141 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 TTC9CQ8N5M4 171 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 Q8N6K4 173 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 RAB37Q96AX2 223 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 THYN1Q9P016 225 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 RABAC1Q9UI14 185 aa6.47□□□□□ -1.37
CD44-208ENST00000428726 TRBV6-1A0A0K0K1D8 114 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 WI2-2373I1.2A0A1W2PRP0 233 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 SPOCK3Q9BQ16 436 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 TMEM70Q9BUB7 260 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 CT45A10P0DMU9 189 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 UBE2E1P51965 193 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 AMMECR1LQ6DCA0 310 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 GFRA4Q9GZZ7 299 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 OTOGQ6ZRI0 2925 aa6.46□□□□□ -1.38
CD44-208ENST00000428726 VWFP04275 2813 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 TRAV9-2A0A087WT02 112 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 FAM231BA6NCW3 169 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 K7EQM0 130 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 SH2D1AO60880 128 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 SCGB2A1O75556 95 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 HBBP68871 147 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 KLHDC1Q8N7A1 406 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 LINC00477Q96M19 166 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 TTTY13Q9BZ97 58 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 UFC1Q9Y3C8 167 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 A0A1B0GXF2 115 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 CSN1S1P47710 185 aa6.45□□□□□ -1.38
CD44-208ENST00000428726 UNC79Q9P2D8 2635 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 D6R8Y8 96 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 NPIPB6E9PJ23 425 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 OVOL3O00110 214 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 LINC00614P0C842 121 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 IFI27P40305 119 aaPredicted RBP6.44□□□□□ -1.38
CD44-208ENST00000428726 PSG3Q16557 428 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 PIFOQ8TCI5 191 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 TRAV41A0A0B4J266 112 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 TMEM189A5PLL7 270 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 FBLL1A6NHQ2 334 aaKnown RBP6.44□□□□□ -1.38
CD44-208ENST00000428726 SYS1-DBNDD2H3BUS1 97 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 IGHG4P01861 327 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 KLF5Q13887 457 aaPredicted RBP6.44□□□□□ -1.38
CD44-208ENST00000428726 ZNF738Q8NE65 137 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 PRSS3P2Q8NHM4 247 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 K7EP13 123 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 MRPS12O15235 138 aaKnown RBP6.44□□□□□ -1.38
CD44-208ENST00000428726 PDE6HQ13956 83 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 RBPMS2Q6ZRY4 209 aaKnown RBP6.44□□□□□ -1.38
CD44-208ENST00000428726 C18orf65Q6ZTR6 163 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 C16orf92Q96LL3 132 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 VPS25Q9BRG1 176 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 PIMREGQ9BSJ6 248 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 COX11Q9Y6N1 276 aa6.44□□□□□ -1.38
CD44-208ENST00000428726 IGHV1-69DA0A0B4J2H0 117 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 IGHV1-69P01742 117 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 DEFB112Q30KQ8 113 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 C5orf56Q8N8D9 126 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 C11orf21Q9P2W6 132 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 ATRQ13535 2644 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 A0A1W2PRX2 142 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 M0R381 172 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 ARL3P36405 182 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 ATP5G2Q06055 141 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 C4orf48Q5BLP8 95 aa6.43□□□□□ -1.38
CD44-208ENST00000428726 TRAV12-2A0A075B6T6 113 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 HSBP1L1C9JCN9 74 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 SRSF1Q07955 248 aaKnown RBP eCLIP6.42□□□□□ -1.38
CD44-208ENST00000428726 FAM162BQ5T6X4 162 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 NEGR1Q7Z3B1 354 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 C20orf173Q96LM9 149 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 CBY1Q9Y3M2 126 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 A0A1B0GUT8 65 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 CLPSL1A2RUU4 121 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 OR5AL1P0C617 328 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 RPL7P18124 248 aaKnown RBP6.42□□□□□ -1.38
CD44-208ENST00000428726 NMUP48645 174 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 PSG9Q00887 426 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 HIST1H1AQ02539 215 aaPredicted RBP6.42□□□□□ -1.38
CD44-208ENST00000428726 C16orf54Q6UWD8 224 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 ZNF502Q8TBZ5 544 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 PRR25Q96S07 402 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 AGPAT4-IT1Q9H0P7 198 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.42□□□□□ -1.38
CD44-208ENST00000428726 BUB3O43684 328 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 GOSR1O95249 250 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 UBE2V1Q13404 147 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 PRR9Q5T870 116 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 OR10AG1Q8NH19 301 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 C10orf105Q8TEF2 133 aa6.42□□□□□ -1.38
CD44-208ENST00000428726 MSMBP08118 114 aa6.41□□□□□ -1.38
CD44-208ENST00000428726 RIPPLY3P57055 190 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms