RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 C2orf70A6NJV1 201 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 MUSTN1Q8IVN3 82 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 VPREB3Q9UKI3 123 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 A0A1W2PPI3 338 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 ATP5IP56385 69 aaPredicted RBP4.03□□□□□ -1.76
VPS13D-214ENST00000620676 RALGAPA2Q2PPJ7 1873 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 PATE3B3GLJ2 98 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 GFRALQ6UXV0 394 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 HLA-DMBP28068 263 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 ZGRF1Q86YA3 2104 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 IGHV1OR15-9A0A0B4J2B8 117 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 IGHV3-53P01767 116 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 ZNF71Q9NQZ8 489 aaPredicted RBP4.03□□□□□ -1.76
VPS13D-214ENST00000620676 TAL2Q16559 108 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 TCTEX1D4Q5JR98 221 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 Q8N8P6 123 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 MLST8Q9BVC4 326 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 PLXND1Q9Y4D7 1925 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.03□□□□□ -1.76
VPS13D-214ENST00000620676 IGHV3-16A0A0C4DH30 117 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 SHISA9B4DS77 424 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 CHD8Q9HCK8 2581 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 LEPROTO15243 131 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 ZNF503Q96F45 646 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 PLXNB2O15031 1838 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 PRSS46E5RG02 174 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 ZNF493Q6ZR52 646 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 JPT1Q9UK76 154 aa4.03□□□□□ -1.76
VPS13D-214ENST00000620676 IGHV3-38A0A0C4DH36 116 aa4.03□□□□□ -1.77
VPS13D-214ENST00000620676 CFC1BP0CG36 223 aa4.03□□□□□ -1.77
VPS13D-214ENST00000620676 CFC1P0CG37 223 aa4.03□□□□□ -1.77
VPS13D-214ENST00000620676 COX6A1P12074 109 aa4.03□□□□□ -1.77
VPS13D-214ENST00000620676 LGALS9BQ3B8N2 356 aa4.03□□□□□ -1.77
VPS13D-214ENST00000620676 LGALS9CQ6DKI2 356 aa4.03□□□□□ -1.77
VPS13D-214ENST00000620676 C3orf22Q8N5N4 141 aa4.03□□□□□ -1.77
VPS13D-214ENST00000620676 KNCNA6PVL3 124 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 FXYD5Q96DB9 178 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 PHF3Q92576 2039 aaKnown RBP4.02□□□□□ -1.77
VPS13D-214ENST00000620676 NOTCH2Q04721 2471 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 LRRK2Q5S007 2527 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 Q8N976 141 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 LINC01587Q99440 93 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 SBF1O95248 1867 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 Q8N1Y9 231 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 ARRDC1-AS1Q9H2J1 176 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 CXCL10P02778 98 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 DTX2Q86UW9 622 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 UBR3Q6ZT12 1888 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 PHLDA1Q8WV24 401 aaPredicted RBP4.02□□□□□ -1.77
VPS13D-214ENST00000620676 RITA1Q96K30 269 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 HEATR5AQ86XA9 2040 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 GFRA4Q9GZZ7 299 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 IGLC6P0CF74 106 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 C2orf91Q6ZV80 131 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 FRMPD3Q5JV73 1810 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 ZNF492Q9P255 531 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 SRRM4A7MD48 611 aaKnown RBP4.02□□□□□ -1.77
VPS13D-214ENST00000620676 Q6ZQT7 251 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 TRGV3P03979 118 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 CECR9P0C854 216 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.02□□□□□ -1.77
VPS13D-214ENST00000620676 LTBRP36941 435 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 IL11RAQ14626 422 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 TPSG1Q9NRR2 321 aa4.02□□□□□ -1.77
VPS13D-214ENST00000620676 SHANK3Q9BYB0 1731 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 THSD7AQ9UPZ6 1657 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 ZNF876PQ49A33 203 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 TM2D2Q9BX73 214 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 ZNF134P52741 427 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 FOXE3Q13461 319 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 RSPO1Q2MKA7 263 aaPredicted RBP4.01□□□□□ -1.77
VPS13D-214ENST00000620676 C1orf53Q5VUE5 145 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 C2orf66Q6UXQ4 117 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 PLEKHB2Q96CS7 222 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 GREB1Q4ZG55 1949 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 IGHG4P01861 327 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 V9GYY9 64 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 IGKV2D-26A0A0A0MRZ7 120 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 TSC2P49815 1807 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 LINC00310P59036 64 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 WDR86Q86TI4 376 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 DTX1Q86Y01 620 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 IGF2BP2-AS1Q96M15 143 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 TRAV4A0A0B4J268 109 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 IGHV1-2P23083 117 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 IGHV4-4A0A075B6R2 117 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 TRAV23DV6A0A075B6W5 121 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 ODF3L1Q8IXM7 274 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 OPRPNQ99935 248 aaPredicted RBP4.01□□□□□ -1.77
VPS13D-214ENST00000620676 HAMPP81172 84 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 J3QQQ9 107 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 CFHR3Q02985 330 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 VCYO14598 125 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 NDUFA7O95182 113 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 C5orf64Q2M2E5 130 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 SPTSSBQ8NFR3 76 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 C1orf159Q96HA4 380 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 NDUFA12Q9UI09 145 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 LRCOL1A6NCL2 159 aa4.01□□□□□ -1.77
VPS13D-214ENST00000620676 RBMY1BA6NDE4 496 aaKnown RBP4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms