RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 OOSP1A8MZH6 123 aa14.95□□□□□ -0.02
VPS28-213ENST00000530983 ZFP36P26651 326 aaKnown RBP14.95□□□□□ -0.02
VPS28-213ENST00000530983 PAX8Q06710 450 aa14.95□□□□□ -0.02
VPS28-213ENST00000530983 IGHV3-35A0A0C4DH35 117 aa14.95□□□□□ -0.02
VPS28-213ENST00000530983 FBLL1A6NHQ2 334 aaKnown RBP14.95□□□□□ -0.02
VPS28-213ENST00000530983 IGLC6P0CF74 106 aa14.95□□□□□ -0.02
VPS28-213ENST00000530983 FER1L6-AS1Q8NA97 138 aa14.95□□□□□ -0.02
VPS28-213ENST00000530983 FXYD7P58549 80 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 KLRB1Q12918 225 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 TMEM97Q5BJF2 176 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 PSMG3-AS1Q96PY0 264 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 GAGE10A6NGK3 116 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 SMKR1H3BMG3 65 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 TWIST1Q15672 202 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 MINOS1Q5TGZ0 78 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 UFSP1Q6NVU6 142 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 Q8N9W7 124 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 DPF1Q92782 380 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 MINOS1-NBL1R4GNA1 71 aa14.94□□□□□ -0.02
VPS28-213ENST00000530983 SCGB2A1O75556 95 aa14.93□□□□□ -0.02
VPS28-213ENST00000530983 NPYP01303 97 aa14.93□□□□□ -0.02
VPS28-213ENST00000530983 BMI1P35226 326 aa14.93□□□□□ -0.02
VPS28-213ENST00000530983 SEC11AP67812 179 aa14.93□□□□□ -0.02
VPS28-213ENST00000530983 FGF6P10767 208 aa14.93□□□□□ -0.02
VPS28-213ENST00000530983 UQCRFS1P47985 274 aa14.93□□□□□ -0.02
VPS28-213ENST00000530983 RIPPLY3P57055 190 aa14.93□□□□□ -0.02
VPS28-213ENST00000530983 SELENOKQ9Y6D0 94 aa14.93□□□□□ -0.02
VPS28-213ENST00000530983 CKS2P33552 79 aa14.92□□□□□ -0.02
VPS28-213ENST00000530983 HBDP02042 147 aa14.92□□□□□ -0.02
VPS28-213ENST00000530983 LGALS9BQ3B8N2 356 aa14.92□□□□□ -0.02
VPS28-213ENST00000530983 LGALS9CQ6DKI2 356 aa14.92□□□□□ -0.02
VPS28-213ENST00000530983 JMJD8Q96S16 334 aa14.92□□□□□ -0.02
VPS28-213ENST00000530983 MED13LQ71F56 2210 aa14.91□□□□□ -0.02
VPS28-213ENST00000530983 SIRPDQ9H106 197 aa14.91□□□□□ -0.02
VPS28-213ENST00000530983 MSRB1Q9NZV6 116 aa14.91□□□□□ -0.02
VPS28-213ENST00000530983 CACNG7P62955 275 aa14.91□□□□□ -0.02
VPS28-213ENST00000530983 C15orf32Q32M92 178 aa14.91□□□□□ -0.02
VPS28-213ENST00000530983 ZNF502Q8TBZ5 544 aa14.91□□□□□ -0.02
VPS28-213ENST00000530983 PRAC2D3DTV9 90 aa14.9□□□□□ -0.02
VPS28-213ENST00000530983 SRSF2Q01130 221 aaKnown RBP14.9□□□□□ -0.02
VPS28-213ENST00000530983 ERCC8Q13216 396 aa14.9□□□□□ -0.02
VPS28-213ENST00000530983 ZFAND3Q9H8U3 227 aa14.9□□□□□ -0.02
VPS28-213ENST00000530983 TMEM238C9JI98 176 aa14.89□□□□□ -0.03
VPS28-213ENST00000530983 ORM1P02763 201 aa14.89□□□□□ -0.03
VPS28-213ENST00000530983 NHLH1Q02575 133 aa14.89□□□□□ -0.03
VPS28-213ENST00000530983 FAM110DQ8TAY7 271 aaPredicted RBP14.89□□□□□ -0.03
VPS28-213ENST00000530983 CNFNQ9BYD5 112 aa14.89□□□□□ -0.03
VPS28-213ENST00000530983 C9orf118A6NHY6 69 aa14.89□□□□□ -0.03
VPS28-213ENST00000530983 RNF185Q96GF1 192 aa14.89□□□□□ -0.03
VPS28-213ENST00000530983 AJUBAQ96IF1 538 aa14.89□□□□□ -0.03
VPS28-213ENST00000530983 NAA38Q9BRA0 125 aaKnown RBP14.89□□□□□ -0.03
VPS28-213ENST00000530983 ATRXP46100 2492 aa14.89□□□□□ -0.03
VPS28-213ENST00000530983 BUB3O43684 328 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 ECSCRQ19T08 205 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 DTX2Q86UW9 622 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 RAXQ9Y2V3 346 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 IGF2RP11717 2491 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 A0A1W2PPR1 153 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 FABP5P3A8MUU1 101 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 H3BRM9 83 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 NDUFS7O75251 213 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 CLEC3BP05452 202 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 PRSS57Q6UWY2 283 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 GTF2H5Q6ZYL4 71 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 RNF182Q8N6D2 247 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 IFI27L1Q96BM0 104 aa14.88□□□□□ -0.03
VPS28-213ENST00000530983 GAS8-AS1O95177 125 aa14.87□□□□□ -0.03
VPS28-213ENST00000530983 H3BUT2 72 aa14.87□□□□□ -0.03
VPS28-213ENST00000530983 ATP6V0E1O15342 81 aa14.87□□□□□ -0.03
VPS28-213ENST00000530983 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.87□□□□□ -0.03
VPS28-213ENST00000530983 OR1N2Q8NGR9 330 aa14.87□□□□□ -0.03
VPS28-213ENST00000530983 CACNA1BQ00975 2339 aa14.87□□□□□ -0.03
VPS28-213ENST00000530983 G3V4G9 280 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 KLK9Q2XQG4 91 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 AP1S3Q96PC3 154 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 KLK9Q9UKQ9 250 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 CLPSL1A2RUU4 121 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 TCTAP57738 103 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 LINC01559Q495D7 138 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 IL17RELQ6ZVW7 336 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 BOD1L2Q8IYS8 172 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 CCDC140Q96MF4 163 aa14.86□□□□□ -0.03
VPS28-213ENST00000530983 IGHV3-66A0A0C4DH42 116 aa14.85□□□□□ -0.03
VPS28-213ENST00000530983 K7EP34 96 aa14.85□□□□□ -0.03
VPS28-213ENST00000530983 KIR3DS1Q14943 382 aa14.85□□□□□ -0.03
VPS28-213ENST00000530983 ZFHX3Q15911 3703 aa14.85□□□□□ -0.03
VPS28-213ENST00000530983 A6NDN8 102 aa14.84□□□□□ -0.03
VPS28-213ENST00000530983 NPFFR1Q9GZQ6 430 aa14.84□□□□□ -0.03
VPS28-213ENST00000530983 RBAKDNA6NC62 111 aa14.84□□□□□ -0.03
VPS28-213ENST00000530983 RAB9AP51151 201 aa14.84□□□□□ -0.03
VPS28-213ENST00000530983 UBE2E1P51965 193 aa14.84□□□□□ -0.03
VPS28-213ENST00000530983 LINC01546A6NGU7 62 aa14.83□□□□□ -0.03
VPS28-213ENST00000530983 PPIFP30405 207 aaKnown RBP14.83□□□□□ -0.03
VPS28-213ENST00000530983 WFDC3Q8IUB2 231 aa14.83□□□□□ -0.03
VPS28-213ENST00000530983 MAP1LC3AQ9H492 121 aa14.83□□□□□ -0.03
VPS28-213ENST00000530983 SPTBN1Q01082 2364 aaKnown RBP14.83□□□□□ -0.04
VPS28-213ENST00000530983 A0A0G2JLM5 398 aa14.83□□□□□ -0.04
VPS28-213ENST00000530983 LINC01548A6NM66 108 aa14.83□□□□□ -0.04
VPS28-213ENST00000530983 G3V318 75 aa14.83□□□□□ -0.04
VPS28-213ENST00000530983 SAA4P35542 130 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms