RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 ATPIF1Q9UII2 106 aa0.45□□□□□ -2.34
LSM6-205ENST00000507449 TRACP01848 142 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 RPL37AP61513 92 aaKnown RBP0.44□□□□□ -2.34
LSM6-205ENST00000507449 NEDD8Q15843 81 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 SPATA8Q6RVD6 105 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 LINC00305Q7Z4B0 112 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 CCL19Q99731 98 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 NABP2Q9BQ15 211 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 LAMTOR2Q9Y2Q5 125 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 MED31Q9Y3C7 131 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 ZNF462Q96JM2 2506 aa0.44□□□□□ -2.34
LSM6-205ENST00000507449 TRBV27A0A0K0K1C4 114 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 C3orf85A0A1B0GTC6 90 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 POLR2HP52434 150 aaKnown RBP0.43□□□□□ -2.34
LSM6-205ENST00000507449 MAXP61244 160 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 KRTAP21-1Q3LI58 79 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 CASC2Q6XLA1 102 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 Q6ZQY7 126 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 ATOH7Q8N100 152 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 LPAR5Q9H1C0 372 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 BOKQ9UMX3 212 aaPredicted RBP0.43□□□□□ -2.34
LSM6-205ENST00000507449 APCP25054 2843 aa0.43□□□□□ -2.34
LSM6-205ENST00000507449 TCOF1Q13428 1488 aaKnown RBP0.42□□□□□ -2.34
LSM6-205ENST00000507449 MUC4Q99102 2169 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 FAM135BQ49AJ0 1406 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 C5orf58C9J3I9 102 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 IGHV3-30P01768 117 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 IGHV3-30-5P0DP03 117 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 TPT1P13693 172 aaKnown RBP0.42□□□□□ -2.34
LSM6-205ENST00000507449 NDUFA6P56556 154 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 CSAG1Q6PB30 78 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 Q86TA4 180 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 C5orf17Q8NAS9 161 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 MORN4Q8NDC4 146 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 OR5AK2Q8NH90 309 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 PLAC4Q8WY50 150 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 CENPHQ9H3R5 247 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 TRAPPC2LQ9UL33 140 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 DLC1Q96QB1 1528 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 FANCMQ8IYD8 2048 aa0.42□□□□□ -2.34
LSM6-205ENST00000507449 TRAV13-1A0A0B4J241 112 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 TRBV7-6A0A0J9YX20 115 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 A0A1B0GV72 72 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 A6NN06 94 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 E7EQ34 232 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 H3BMG7 143 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 PGRMC1O00264 195 aaKnown RBP0.41□□□□□ -2.34
LSM6-205ENST00000507449 PRH1P02810 166 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 RPS3P23396 243 aaKnown RBP eCLIP0.41□□□□□ -2.34
LSM6-205ENST00000507449 IZUMO2Q6UXV1 221 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 CIB3Q96Q77 187 aaPredicted RBP0.41□□□□□ -2.34
LSM6-205ENST00000507449 CBLN4Q9NTU7 201 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 ZCCHC11Q5TAX3 1644 aaKnown RBP0.41□□□□□ -2.34
LSM6-205ENST00000507449 MEGF8Q7Z7M0 2845 aa0.41□□□□□ -2.34
LSM6-205ENST00000507449 CTTNBP2Q8WZ74 1663 aa0.4□□□□□ -2.34
LSM6-205ENST00000507449 LOC107984640A0A0U1RRK4 108 aa0.4□□□□□ -2.35
LSM6-205ENST00000507449 SAA1P0DJI8 122 aaPredicted RBP0.4□□□□□ -2.35
LSM6-205ENST00000507449 SLC25A4P12235 298 aa0.4□□□□□ -2.35
LSM6-205ENST00000507449 SPINT3P49223 89 aa0.4□□□□□ -2.35
LSM6-205ENST00000507449 C10orf111Q8N326 155 aa0.4□□□□□ -2.35
LSM6-205ENST00000507449 GRPEL2Q8TAA5 225 aa0.4□□□□□ -2.35
LSM6-205ENST00000507449 LXNQ9BS40 222 aa0.4□□□□□ -2.35
LSM6-205ENST00000507449 V9GYQ6 96 aa0.4□□□□□ -2.35
LSM6-205ENST00000507449 PBRM1Q86U86 1689 aa0.4□□□□□ -2.35
LSM6-205ENST00000507449 FGD6Q6ZV73 1430 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 AHNAKQ09666 5890 aaKnown RBP0.39□□□□□ -2.35
LSM6-205ENST00000507449 PTPRDP23468 1912 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 LOC107984156A0A0G2JMH3 177 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 PFDN1O60925 122 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 FAM107AO95990 144 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 IFNA21P01568 189 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 KRTAP2-3P0C7H8 128 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 CCL4P13236 92 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 CRYGSP22914 178 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 TFAMQ00059 246 aaKnown RBP0.39□□□□□ -2.35
LSM6-205ENST00000507449 TMEM128Q5BJH2 165 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 ARL17AQ8IVW1 177 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 TMEM229BQ8NBD8 167 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 OR51A4Q8NGJ6 313 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 CCDC115Q96NT0 180 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 KRTAP2-4Q9BYR9 128 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 KRTAP2-1Q9BYU5 128 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 MPC1Q9Y5U8 109 aa0.39□□□□□ -2.35
LSM6-205ENST00000507449 ZFC3H1O60293 1989 aaKnown RBP0.38□□□□□ -2.35
LSM6-205ENST00000507449 ANKRD31Q8N7Z5 1873 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 USP54Q70EL1 1684 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 M0QZK8 103 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 NEFHP12036 1026 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 ZNF137PP52743 207 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 BLCAPP62952 87 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 QRFPP83859 136 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 C6orf52Q5T4I8 152 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 TOMM20LQ6UXN7 152 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 NAT14Q8WUY8 206 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 FAM103A1Q9BTL3 118 aaKnown RBP0.38□□□□□ -2.35
LSM6-205ENST00000507449 ZGRF1Q86YA3 2104 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 DSPPQ9NZW4 1301 aa0.38□□□□□ -2.35
LSM6-205ENST00000507449 NUP210Q8TEM1 1887 aaPredicted RBP0.37□□□□□ -2.35
LSM6-205ENST00000507449 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.37□□□□□ -2.35
LSM6-205ENST00000507449 PRORSD1PA6NEY8 169 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms