RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 OR4C46A6NHA9 309 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 OR5H14A6NHG9 310 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 BET1O15155 118 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 SLC31A2O15432 143 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 APOA2P02652 100 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 SCTP09683 121 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 PSMB2P49721 201 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 IFITM2Q01629 132 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 DIAPH2-AS1Q14236 149 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 PMVKQ15126 192 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 Q6ZS49 121 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 ZNF833PQ6ZTB9 187 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 SLC35E3Q7Z769 313 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 SMIM29Q86T20 159 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 NDUFA11Q86Y39 141 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 SLC35G3Q8N808 338 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.52□□□□□ -1.69
VPS53-212ENST00000572259 OR10G9Q8NGN4 311 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 RNASE11Q8TAA1 199 aaKnown RBP4.52□□□□□ -1.69
VPS53-212ENST00000572259 ACOT12Q8WYK0 555 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 RNF185Q96GF1 192 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 FMC1Q96HJ9 113 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 RTBDNQ9BSG5 229 aaPredicted RBP4.52□□□□□ -1.69
VPS53-212ENST00000572259 HDHD3Q9BSH5 251 aaPredicted RBP4.52□□□□□ -1.69
VPS53-212ENST00000572259 PKD1L1Q8TDX9 2849 aa4.52□□□□□ -1.69
VPS53-212ENST00000572259 TRBV6-7A0A0A0MS04 114 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 TCRBV4S1A1TA0A5B7 111 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 IGHG2P01859 326 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 OR8U8P0C7N1 319 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 SAA2P0DJI9 122 aaPredicted RBP4.51□□□□□ -1.69
VPS53-212ENST00000572259 LSM3P62310 102 aaKnown RBP4.51□□□□□ -1.69
VPS53-212ENST00000572259 TMEM267Q0VDI3 215 aaPredicted RBP4.51□□□□□ -1.69
VPS53-212ENST00000572259 PLGLAQ15195 96 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 MMDQ15546 238 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 UBE2NLQ5JXB2 153 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 FAM78BQ5VT40 261 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 C5orf56Q8N8D9 126 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 C11orf72Q8NBR9 251 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 BORCS7Q96B45 105 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 ABHD14BQ96IU4 210 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 NABP2Q9BQ15 211 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 ABCG5Q9H222 651 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 CARHSP1Q9Y2V2 147 aaKnown RBP4.51□□□□□ -1.69
VPS53-212ENST00000572259 WASHC3Q9Y3C0 194 aa4.51□□□□□ -1.69
VPS53-212ENST00000572259 SORL1Q92673 2214 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 A0A1B0GXF2 115 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 TMEM235A6NFC5 223 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 M0R1X1 148 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 UPK2O00526 184 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 NDUFS5O43920 106 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 OR10J4P0C629 311 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 SULT1A3P0DMM9 295 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 SULT1A4P0DMN0 295 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 SPNP16150 400 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 DDTP30046 118 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 CTRLP40313 264 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 H2BFSP57053 126 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 RAB2AP61019 212 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 BATFQ16520 125 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 RTL8BQ17RB0 113 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 TMEM69Q5SWH9 247 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 FAM53AQ6NSI3 398 aaPredicted RBP4.5□□□□□ -1.69
VPS53-212ENST00000572259 CLEC19AQ6UXS0 136 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 NEGR1Q7Z3B1 354 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 PDPNQ86YL7 162 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 Q8N6K4 173 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 NKAPP1Q8N9T2 125 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 Q8N9W7 124 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 OR11H7Q8NGC8 314 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 OR5H6Q8NGV6 325 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 C15orf40Q8WUR7 153 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 IL22RA2Q969J5 263 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 SLC25A46Q96AG3 418 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 GINS3Q9BRX5 216 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 MRPL20Q9BYC9 149 aaKnown RBP4.5□□□□□ -1.69
VPS53-212ENST00000572259 OR2D2Q9H210 308 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 IFI27L2Q9H2X8 130 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 COMMD3Q9UBI1 195 aa4.5□□□□□ -1.69
VPS53-212ENST00000572259 ZNF230Q9UIE0 474 aaPredicted RBP4.5□□□□□ -1.69
VPS53-212ENST00000572259 NOTCH1P46531 2555 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 FBN3Q75N90 2809 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 IGSF23A1L1A6 192 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 MPTX1A8MV57 137 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 KRTAP29-1A8MX34 341 aaPredicted RBP4.49□□□□□ -1.69
VPS53-212ENST00000572259 ZNF736B4DX44 427 aaPredicted RBP4.49□□□□□ -1.69
VPS53-212ENST00000572259 H0YJW9 148 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 YIF1AO95070 293 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 MT-CO2P00403 227 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 HLA-DRB1P01911 266 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 CD28P10747 220 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 ESDP10768 282 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 PRSS3P35030 304 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 KRTAP10-3P60369 221 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 KIAA0087Q14695 138 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 RPL39P5Q59GN2 51 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 ZNF660Q6AZW8 331 aaPredicted RBP4.49□□□□□ -1.69
VPS53-212ENST00000572259 H1FOOQ8IZA3 346 aaPredicted RBP4.49□□□□□ -1.69
VPS53-212ENST00000572259 ZNF645Q8N7E2 425 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 NPBQ8NG41 125 aa4.49□□□□□ -1.69
VPS53-212ENST00000572259 VN1R17PQ8TDU5 208 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms